data_VDH # _chem_comp.id VDH _chem_comp.name "N-(5-ethyl-4-oxidanylidene-1,2,3,6-tetrahydro-1,5-benzodiazocin-8-yl)-7-methyl-2-oxidanylidene-1H-pyrazolo[1,5-a]pyrimidine-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-(5-ethyl-4-oxo-1,2,3,4,5,6-hexahydro-1,5-benzodiazocin-8-yl)-7methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-06 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 394.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OGI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDH N1 N1 N 0 1 N N N -30.834 14.079 0.136 -4.508 -1.399 0.297 N1 VDH 1 VDH N3 N2 N 0 1 N N N -24.602 12.924 6.816 5.022 1.694 0.576 N3 VDH 2 VDH C4 C1 C 0 1 Y N N -28.408 13.605 0.525 -3.071 0.482 0.850 C4 VDH 3 VDH C5 C2 C 0 1 Y N N -28.066 13.161 1.794 -1.732 0.171 0.987 C5 VDH 4 VDH C6 C3 C 0 1 Y N N -27.039 12.252 1.984 -0.763 1.047 0.514 C6 VDH 5 VDH C7 C4 C 0 1 Y N N -26.330 11.772 0.890 -1.139 2.236 -0.096 C7 VDH 6 VDH C8 C5 C 0 1 Y N N -26.642 12.208 -0.373 -2.478 2.548 -0.232 C8 VDH 7 VDH C10 C6 C 0 1 N N N -25.353 11.338 5.190 2.915 0.873 -0.099 C10 VDH 8 VDH C13 C7 C 0 1 N N N -24.192 11.922 9.037 6.882 0.047 0.387 C13 VDH 9 VDH C15 C8 C 0 1 N N N -25.643 8.881 5.764 2.641 -1.482 -0.932 C15 VDH 10 VDH C17 C9 C 0 1 Y N N -27.669 13.129 -0.568 -3.445 1.671 0.242 C17 VDH 11 VDH C20 C10 C 0 1 N N N -31.155 13.589 -1.074 -5.559 -1.122 -0.496 C20 VDH 12 VDH C1 C11 C 0 1 N N N -31.427 13.558 2.492 -4.352 -3.754 0.940 C1 VDH 13 VDH C11 C12 C 0 1 N N N -25.003 12.634 5.605 3.740 1.907 0.401 C11 VDH 14 VDH C12 C13 C 0 1 N N N -24.557 11.917 7.709 5.573 0.506 0.289 C12 VDH 15 VDH C14 C14 C 0 1 N N N -25.298 10.292 6.105 3.486 -0.355 -0.396 C14 VDH 16 VDH C16 C15 C 0 1 N N N -24.307 10.618 9.514 6.901 -1.280 -0.049 C16 VDH 17 VDH C18 C16 C 0 1 N N N -29.155 13.378 -2.630 -5.600 1.324 -0.920 C18 VDH 18 VDH C19 C17 C 0 1 N N N -30.404 14.163 -2.253 -6.348 0.145 -0.304 C19 VDH 19 VDH C2 C18 C 0 1 N N N -31.838 14.218 1.205 -3.747 -2.634 0.091 C2 VDH 20 VDH C3 C19 C 0 1 N N N -29.501 14.633 0.384 -4.115 -0.475 1.360 C3 VDH 21 VDH C9 C20 C 0 1 N N N -25.743 11.131 3.770 1.473 1.096 -0.301 C9 VDH 22 VDH N2 N3 N 0 1 N N N -26.757 11.893 3.324 0.594 0.730 0.654 N2 VDH 23 VDH N4 N4 N 0 1 N N N -24.889 10.615 7.389 4.809 -0.526 -0.199 N4 VDH 24 VDH N5 N5 N 0 1 N N N -24.732 9.830 8.506 5.649 -1.628 -0.404 N5 VDH 25 VDH N6 N6 N 0 1 N N N -27.946 13.583 -1.850 -4.801 1.988 0.105 N6 VDH 26 VDH O1 O1 O 0 1 N N N -24.049 10.215 10.691 7.884 -2.001 -0.100 O1 VDH 27 VDH O2 O2 O 0 1 N N N -25.080 10.387 3.055 1.075 1.610 -1.329 O2 VDH 28 VDH O3 O3 O 0 1 N N N -32.088 12.800 -1.218 -5.872 -1.898 -1.373 O3 VDH 29 VDH H8 H1 H 0 1 N N N -28.611 13.531 2.650 -1.438 -0.753 1.463 H8 VDH 30 VDH H9 H2 H 0 1 N N N -25.534 11.056 1.034 -0.386 2.917 -0.464 H9 VDH 31 VDH H10 H3 H 0 1 N N N -26.088 11.835 -1.222 -2.772 3.473 -0.705 H10 VDH 32 VDH H13 H4 H 0 1 N N N -23.874 12.783 9.607 7.731 0.614 0.737 H13 VDH 33 VDH H15 H6 H 0 1 N N N -25.520 8.247 6.655 1.626 -1.124 -1.104 H15 VDH 34 VDH H16 H7 H 0 1 N N N -26.687 8.832 5.420 3.065 -1.839 -1.870 H16 VDH 35 VDH H14 H8 H 0 1 N N N -24.977 8.524 4.965 2.621 -2.296 -0.208 H14 VDH 36 VDH H1 H9 H 0 1 N N N -32.217 13.698 3.245 -3.786 -4.673 0.786 H1 VDH 37 VDH H2 H10 H 0 1 N N N -31.272 12.483 2.319 -4.311 -3.474 1.992 H2 VDH 38 VDH H3 H11 H 0 1 N N N -30.492 14.010 2.853 -5.389 -3.912 0.646 H3 VDH 39 VDH H12 H12 H 0 1 N N N -25.069 13.435 4.884 3.314 2.870 0.639 H12 VDH 40 VDH H20 H13 H 0 1 N N N -29.409 12.310 -2.560 -4.952 0.964 -1.720 H20 VDH 41 VDH H19 H14 H 0 1 N N N -28.915 13.631 -3.673 -6.318 2.034 -1.330 H19 VDH 42 VDH H22 H15 H 0 1 N N N -30.105 15.192 -2.005 -7.320 0.041 -0.787 H22 VDH 43 VDH H21 H16 H 0 1 N N N -31.080 14.176 -3.121 -6.492 0.324 0.761 H21 VDH 44 VDH H5 H17 H 0 1 N N N -31.999 15.289 1.397 -3.788 -2.914 -0.962 H5 VDH 45 VDH H4 H18 H 0 1 N N N -32.779 13.762 0.863 -2.709 -2.475 0.384 H4 VDH 46 VDH H7 H19 H 0 1 N N N -29.243 15.294 -0.456 -4.988 0.086 1.692 H7 VDH 47 VDH H6 H20 H 0 1 N N N -29.541 15.220 1.313 -3.709 -1.040 2.199 H6 VDH 48 VDH H11 H21 H 0 1 N N N -27.384 12.247 4.018 0.902 0.248 1.437 H11 VDH 49 VDH H17 H22 H 0 1 N N N -24.903 8.846 8.561 5.376 -2.495 -0.743 H17 VDH 50 VDH H18 H23 H 0 1 N N N -27.213 13.206 -2.416 -5.210 2.652 0.682 H18 VDH 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDH C18 C19 SING N N 1 VDH C18 N6 SING N N 2 VDH C19 C20 SING N N 3 VDH N6 C17 SING N N 4 VDH O3 C20 DOUB N N 5 VDH C20 N1 SING N N 6 VDH C17 C8 DOUB Y N 7 VDH C17 C4 SING Y N 8 VDH C8 C7 SING Y N 9 VDH N1 C3 SING N N 10 VDH N1 C2 SING N N 11 VDH C3 C4 SING N N 12 VDH C4 C5 DOUB Y N 13 VDH C7 C6 DOUB Y N 14 VDH C2 C1 SING N N 15 VDH C5 C6 SING Y N 16 VDH C6 N2 SING N N 17 VDH O2 C9 DOUB N N 18 VDH N2 C9 SING N N 19 VDH C9 C10 SING N N 20 VDH C10 C11 SING N N 21 VDH C10 C14 DOUB N N 22 VDH C11 N3 DOUB N N 23 VDH C15 C14 SING N N 24 VDH C14 N4 SING N N 25 VDH N3 C12 SING N N 26 VDH N4 C12 SING N N 27 VDH N4 N5 SING N N 28 VDH C12 C13 DOUB N N 29 VDH N5 C16 SING N N 30 VDH C13 C16 SING N N 31 VDH C16 O1 DOUB N N 32 VDH C5 H8 SING N N 33 VDH C7 H9 SING N N 34 VDH C8 H10 SING N N 35 VDH C13 H13 SING N N 36 VDH C15 H15 SING N N 37 VDH C15 H16 SING N N 38 VDH C15 H14 SING N N 39 VDH C1 H1 SING N N 40 VDH C1 H2 SING N N 41 VDH C1 H3 SING N N 42 VDH C11 H12 SING N N 43 VDH C18 H20 SING N N 44 VDH C18 H19 SING N N 45 VDH C19 H22 SING N N 46 VDH C19 H21 SING N N 47 VDH C2 H5 SING N N 48 VDH C2 H4 SING N N 49 VDH C3 H7 SING N N 50 VDH C3 H6 SING N N 51 VDH N2 H11 SING N N 52 VDH N5 H17 SING N N 53 VDH N6 H18 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDH InChI InChI 1.03 "InChI=1S/C20H22N6O3/c1-3-25-11-13-8-14(4-5-16(13)21-7-6-19(25)28)23-20(29)15-10-22-17-9-18(27)24-26(17)12(15)2/h4-5,8-10,21H,3,6-7,11H2,1-2H3,(H,23,29)(H,24,27)" VDH InChIKey InChI 1.03 OCCBDBRLOQJNFE-UHFFFAOYSA-N VDH SMILES_CANONICAL CACTVS 3.385 "CCN1Cc2cc(NC(=O)C3=C(C)N4NC(=O)C=C4N=C3)ccc2NCCC1=O" VDH SMILES CACTVS 3.385 "CCN1Cc2cc(NC(=O)C3=C(C)N4NC(=O)C=C4N=C3)ccc2NCCC1=O" VDH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1Cc2cc(ccc2NCCC1=O)NC(=O)C3=C(N4C(=CC(=O)N4)N=C3)C" VDH SMILES "OpenEye OEToolkits" 2.0.7 "CCN1Cc2cc(ccc2NCCC1=O)NC(=O)C3=C(N4C(=CC(=O)N4)N=C3)C" # _pdbx_chem_comp_identifier.comp_id VDH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(5-ethyl-4-oxidanylidene-1,2,3,6-tetrahydro-1,5-benzodiazocin-8-yl)-7-methyl-2-oxidanylidene-1~{H}-pyrazolo[1,5-a]pyrimidine-6-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VDH _pdbx_chem_comp_synonyms.name "N-(5-ethyl-4-oxo-1,2,3,4,5,6-hexahydro-1,5-benzodiazocin-8-yl)-7methyl-2-oxo-1H,2H-pyrazolo[1,5-a]pyrimidine-6-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDH "Create component" 2021-05-06 PDBE VDH "Initial release" 2022-06-01 RCSB ##