data_VDJ # _chem_comp.id VDJ _chem_comp.name "[4,4-bis(fluoranyl)cyclohexyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H35 F2 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-30 _chem_comp.pdbx_modified_date 2020-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6W2A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDJ C11 C1 C 0 1 N N S -12.014 -8.601 -24.486 -0.309 0.384 0.510 C11 VDJ 1 VDJ C12 C2 C 0 1 N N N -12.609 -10.020 -24.253 -0.721 1.500 1.472 C12 VDJ 2 VDJ C13 C3 C 0 1 N N N -14.134 -10.033 -24.019 -2.016 1.106 2.185 C13 VDJ 3 VDJ C14 C4 C 0 1 N N N -14.732 -11.447 -24.068 -1.753 -0.098 3.092 C14 VDJ 4 VDJ C15 C5 C 0 1 N N N -14.501 -9.427 -22.664 -2.511 2.282 3.030 C15 VDJ 5 VDJ C16 C6 C 0 1 N N N -10.465 -8.639 -24.437 -1.278 0.333 -0.643 C16 VDJ 6 VDJ C18 C7 C 0 1 N N S -8.347 -8.256 -23.188 -3.430 -0.302 -1.596 C18 VDJ 7 VDJ C19 C8 C 0 1 N N N -7.733 -6.810 -23.074 -4.479 -1.364 -1.264 C19 VDJ 8 VDJ C20 C9 C 0 1 N N S -7.815 -6.035 -24.401 -3.793 -2.720 -1.084 C20 VDJ 9 VDJ C21 C10 C 0 1 N N N -7.327 -4.596 -24.235 -2.903 -2.704 0.139 C21 VDJ 10 VDJ C23 C11 C 0 1 N N N -6.404 -5.339 -26.280 -4.828 -3.841 0.767 C23 VDJ 11 VDJ C24 C12 C 0 1 N N N -6.946 -6.571 -25.536 -4.838 -3.818 -0.778 C24 VDJ 12 VDJ C26 C13 C 0 1 N N R -7.938 -9.119 -21.961 -4.126 1.027 -1.898 C26 VDJ 13 VDJ S S1 S 0 1 N Y N -8.769 -8.480 -20.492 -4.960 1.626 -0.403 S VDJ 14 VDJ C02 C14 C 0 1 N N N -14.030 -3.295 -31.144 8.425 -0.112 -0.707 C02 VDJ 15 VDJ C04 C15 C 0 1 N N N -14.679 -3.970 -29.898 8.267 0.481 0.694 C04 VDJ 16 VDJ C05 C16 C 0 1 N N N -13.857 -5.148 -29.376 6.948 0.004 1.305 C05 VDJ 17 VDJ C06 C17 C 0 1 N N N -12.331 -4.916 -29.340 5.783 0.461 0.424 C06 VDJ 18 VDJ C07 C18 C 0 1 N N N -11.793 -5.354 -27.965 4.464 -0.016 1.034 C07 VDJ 19 VDJ C09 C19 C 0 1 N N N -12.097 -6.832 -26.190 2.114 0.188 0.673 C09 VDJ 20 VDJ C30 C20 C 0 1 N N N -12.037 -3.459 -29.593 5.941 -0.132 -0.978 C30 VDJ 21 VDJ C31 C21 C 0 1 N N N -12.535 -2.968 -30.924 7.260 0.345 -1.588 C31 VDJ 22 VDJ F01 F1 F 0 1 N N N -14.167 -4.094 -32.232 9.631 0.324 -1.266 F01 VDJ 23 VDJ F03 F2 F 0 1 N N N -14.720 -2.204 -31.522 8.427 -1.509 -0.625 F03 VDJ 24 VDJ N10 N1 N 0 1 N N N -12.467 -8.071 -25.778 1.039 0.649 0.003 N10 VDJ 25 VDJ N17 N2 N 0 1 N N N -9.800 -8.245 -23.303 -2.529 -0.132 -0.453 N17 VDJ 26 VDJ N22 N3 N 0 1 N N N -6.538 -4.248 -25.306 -3.504 -3.343 1.157 N22 VDJ 27 VDJ O08 O1 O 0 1 N N N -12.427 -6.511 -27.464 3.354 0.516 0.265 O08 VDJ 28 VDJ O25 O2 O 0 1 N N N -7.558 -3.826 -23.317 -1.805 -2.191 0.192 O25 VDJ 29 VDJ O27 O3 O 0 1 N N N -8.478 -10.395 -22.251 -3.157 1.988 -2.320 O27 VDJ 30 VDJ O28 O4 O 0 1 N N N -9.847 -9.008 -25.430 -0.932 0.709 -1.743 O28 VDJ 31 VDJ O29 O5 O 0 1 N N N -11.493 -6.034 -25.477 1.963 -0.524 1.646 O29 VDJ 32 VDJ H1 H1 H 0 1 N N N -12.368 -7.943 -23.679 -0.319 -0.571 1.035 H1 VDJ 33 VDJ H2 H2 H 0 1 N N N -12.390 -10.636 -25.138 0.067 1.653 2.209 H2 VDJ 34 VDJ H3 H3 H 0 1 N N N -12.120 -10.459 -23.371 -0.880 2.422 0.913 H3 VDJ 35 VDJ H4 H4 H 0 1 N N N -14.608 -9.430 -24.808 -2.773 0.846 1.446 H4 VDJ 36 VDJ H5 H5 H 0 1 N N N -15.817 -11.393 -23.895 -2.690 -0.424 3.543 H5 VDJ 37 VDJ H6 H6 H 0 1 N N N -14.540 -11.892 -25.055 -1.332 -0.912 2.501 H6 VDJ 38 VDJ H7 H7 H 0 1 N N N -14.267 -12.069 -23.289 -1.051 0.183 3.876 H7 VDJ 39 VDJ H8 H8 H 0 1 N N N -15.593 -9.454 -22.533 -2.698 3.140 2.385 H8 VDJ 40 VDJ H9 H9 H 0 1 N N N -14.022 -10.007 -21.861 -3.434 2.001 3.538 H9 VDJ 41 VDJ H10 H10 H 0 1 N N N -14.152 -8.385 -22.622 -1.753 2.542 3.770 H10 VDJ 42 VDJ H11 H11 H 0 1 N N N -7.921 -8.727 -24.086 -2.855 -0.617 -2.467 H11 VDJ 43 VDJ H12 H12 H 0 1 N N N -6.677 -6.896 -22.779 -4.994 -1.092 -0.342 H12 VDJ 44 VDJ H13 H13 H 0 1 N N N -8.284 -6.251 -22.303 -5.202 -1.428 -2.078 H13 VDJ 45 VDJ H14 H14 H 0 1 N N N -8.863 -6.018 -24.734 -3.217 -2.976 -1.973 H14 VDJ 46 VDJ H15 H15 H 0 1 N N N -5.351 -5.484 -26.562 -5.608 -3.187 1.158 H15 VDJ 47 VDJ H16 H16 H 0 1 N N N -7.000 -5.133 -27.182 -4.971 -4.858 1.130 H16 VDJ 48 VDJ H17 H17 H 0 1 N N N -7.547 -7.193 -26.216 -5.821 -3.539 -1.158 H17 VDJ 49 VDJ H18 H18 H 0 1 N N N -6.115 -7.168 -25.131 -4.523 -4.780 -1.184 H18 VDJ 50 VDJ H19 H19 H 0 1 N N N -6.851 -9.111 -21.790 -4.861 0.880 -2.690 H19 VDJ 51 VDJ H21 H21 H 0 1 N N N -14.769 -3.221 -29.098 9.097 0.156 1.322 H21 VDJ 52 VDJ H22 H22 H 0 1 N N N -15.680 -4.333 -30.175 8.265 1.569 0.630 H22 VDJ 53 VDJ H23 H23 H 0 1 N N N -14.192 -5.371 -28.352 6.950 -1.084 1.369 H23 VDJ 54 VDJ H24 H24 H 0 1 N N N -14.055 -6.015 -30.023 6.836 0.427 2.303 H24 VDJ 55 VDJ H25 H25 H 0 1 N N N -11.857 -5.527 -30.122 5.781 1.549 0.359 H25 VDJ 56 VDJ H26 H26 H 0 1 N N N -10.716 -5.558 -28.060 4.429 -1.105 1.017 H26 VDJ 57 VDJ H27 H27 H 0 1 N N N -11.949 -4.532 -27.250 4.393 0.334 2.064 H27 VDJ 58 VDJ H28 H28 H 0 1 N N N -10.948 -3.312 -29.553 5.943 -1.221 -0.913 H28 VDJ 59 VDJ H29 H29 H 0 1 N N N -12.516 -2.865 -28.801 5.111 0.193 -1.605 H29 VDJ 60 VDJ H30 H30 H 0 1 N N N -11.947 -3.446 -31.721 7.258 1.433 -1.653 H30 VDJ 61 VDJ H31 H31 H 0 1 N N N -12.400 -1.877 -30.973 7.372 -0.078 -2.587 H31 VDJ 62 VDJ H32 H32 H 0 1 N N N -13.056 -8.630 -26.362 1.159 1.157 -0.815 H32 VDJ 63 VDJ H33 H33 H 0 1 N N N -10.338 -7.936 -22.519 -2.833 -0.353 0.442 H33 VDJ 64 VDJ H34 H34 H 0 1 N N N -6.104 -3.353 -25.410 -3.113 -3.459 2.037 H34 VDJ 65 VDJ H35 H35 H 0 1 N N N -8.273 -10.995 -21.543 -2.470 2.168 -1.664 H35 VDJ 66 VDJ O1 O6 O 0 1 N Y N -8.030 -9.498 -19.188 -5.607 2.937 -0.829 O1 VDJ 67 VDJ O2 O7 O 0 1 N Y N ? ? ? -6.057 0.785 -0.073 O2 VDJ 68 VDJ O3 O8 O 0 1 N Y N ? ? ? -4.008 2.009 0.580 O3 VDJ 69 VDJ H20 H20 H 0 1 N N N -8.396 -9.250 -18.347 -6.097 3.381 -0.123 H20 VDJ 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDJ F01 C02 SING N N 1 VDJ F03 C02 SING N N 2 VDJ C02 C31 SING N N 3 VDJ C02 C04 SING N N 4 VDJ C31 C30 SING N N 5 VDJ C04 C05 SING N N 6 VDJ C30 C06 SING N N 7 VDJ C05 C06 SING N N 8 VDJ C06 C07 SING N N 9 VDJ C07 O08 SING N N 10 VDJ O08 C09 SING N N 11 VDJ C23 C24 SING N N 12 VDJ C23 N22 SING N N 13 VDJ C09 N10 SING N N 14 VDJ C09 O29 DOUB N N 15 VDJ N10 C11 SING N N 16 VDJ C24 C20 SING N N 17 VDJ O28 C16 DOUB N N 18 VDJ N22 C21 SING N N 19 VDJ C11 C16 SING N N 20 VDJ C11 C12 SING N N 21 VDJ C16 N17 SING N N 22 VDJ C20 C21 SING N N 23 VDJ C20 C19 SING N N 24 VDJ C12 C13 SING N N 25 VDJ C21 O25 DOUB N N 26 VDJ C14 C13 SING N N 27 VDJ C13 C15 SING N N 28 VDJ N17 C18 SING N N 29 VDJ C18 C19 SING N N 30 VDJ C18 C26 SING N N 31 VDJ O27 C26 SING N N 32 VDJ C26 S SING N N 33 VDJ C11 H1 SING N N 34 VDJ C12 H2 SING N N 35 VDJ C12 H3 SING N N 36 VDJ C13 H4 SING N N 37 VDJ C14 H5 SING N N 38 VDJ C14 H6 SING N N 39 VDJ C14 H7 SING N N 40 VDJ C15 H8 SING N N 41 VDJ C15 H9 SING N N 42 VDJ C15 H10 SING N N 43 VDJ C18 H11 SING N N 44 VDJ C19 H12 SING N N 45 VDJ C19 H13 SING N N 46 VDJ C20 H14 SING N N 47 VDJ C23 H15 SING N N 48 VDJ C23 H16 SING N N 49 VDJ C24 H17 SING N N 50 VDJ C24 H18 SING N N 51 VDJ C26 H19 SING N N 52 VDJ C04 H21 SING N N 53 VDJ C04 H22 SING N N 54 VDJ C05 H23 SING N N 55 VDJ C05 H24 SING N N 56 VDJ C06 H25 SING N N 57 VDJ C07 H26 SING N N 58 VDJ C07 H27 SING N N 59 VDJ C30 H28 SING N N 60 VDJ C30 H29 SING N N 61 VDJ C31 H30 SING N N 62 VDJ C31 H31 SING N N 63 VDJ N10 H32 SING N N 64 VDJ N17 H33 SING N N 65 VDJ N22 H34 SING N N 66 VDJ O27 H35 SING N N 67 VDJ S O1 SING N N 68 VDJ S O2 DOUB N N 69 VDJ S O3 DOUB N N 70 VDJ O1 H20 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDJ SMILES ACDLabs 12.01 "C(C(NC(CC1C(=O)NCC1)C(S(O)(=O)=O)O)=O)(CC(C)C)NC(=O)OCC2CCC(CC2)(F)F" VDJ InChI InChI 1.03 "InChI=1S/C21H35F2N3O8S/c1-12(2)9-15(26-20(30)34-11-13-3-6-21(22,23)7-4-13)18(28)25-16(19(29)35(31,32)33)10-14-5-8-24-17(14)27/h12-16,19,29H,3-11H2,1-2H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t14-,15-,16-,19+/m0/s1" VDJ InChIKey InChI 1.03 BHZBRFONZANPNK-IUVQAAGXSA-N VDJ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC1CCC(F)(F)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" VDJ SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC1CCC(F)(F)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" VDJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC2CCC(CC2)(F)F" VDJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(CC2)(F)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VDJ "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" VDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[[4,4-bis(fluoranyl)cyclohexyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDJ "Create component" 2020-07-30 RCSB VDJ "Initial release" 2020-08-12 RCSB ##