data_VDN
#
_chem_comp.id VDN
_chem_comp.name "2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H32 N6 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "VARDENAFIL, LEVITRA"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-10
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 488.603
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VDN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1UHO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VDN C1 C1 C 0 1 N N N 5.649 65.412 87.021 -5.759 -0.180 2.537 C1 VDN 1
VDN C2 C2 C 0 1 N N N 5.743 66.607 86.066 -4.840 0.193 1.373 C2 VDN 2
VDN O3 O3 O 0 1 N N N 4.448 66.652 85.451 -3.477 0.019 1.766 O3 VDN 3
VDN C4 C4 C 0 1 Y N N 4.008 67.563 84.512 -2.714 0.363 0.699 C4 VDN 4
VDN C5 C5 C 0 1 Y N N 4.736 68.613 83.976 -3.312 0.785 -0.478 C5 VDN 5
VDN C6 C6 C 0 1 Y N N 4.148 69.523 82.977 -2.534 1.135 -1.563 C6 VDN 6
VDN C7 C7 C 0 1 Y N N 2.847 69.329 82.555 -1.152 1.074 -1.484 C7 VDN 7
VDN C8 C8 C 0 1 Y N N 2.044 68.207 83.113 -0.540 0.664 -0.320 C8 VDN 8
VDN C9 C9 C 0 1 Y N N 2.548 67.357 84.027 -1.315 0.306 0.786 C9 VDN 9
VDN S10 S10 S 0 1 N N N 2.096 70.361 81.367 -0.173 1.525 -2.878 S10 VDN 10
VDN O11 O11 O 0 1 N N N 2.700 70.039 80.092 -0.996 2.369 -3.671 O11 VDN 11
VDN O12 O12 O 0 1 N N N 0.674 70.087 81.440 1.102 1.872 -2.358 O12 VDN 12
VDN C13 C13 C 0 1 N N N 2.476 77.196 80.332 2.694 -2.940 -6.821 C13 VDN 13
VDN N14 N14 N 0 1 N N N 2.396 71.942 81.781 0.065 0.155 -3.778 N14 VDN 14
VDN C15 C15 C 0 1 N N N 1.175 72.726 82.109 1.225 -0.716 -3.540 C15 VDN 15
VDN C16 C16 C 0 1 N N N 1.482 74.208 82.424 1.900 -1.007 -4.880 C16 VDN 16
VDN N17 N17 N 0 1 N N N 2.190 74.844 81.289 0.923 -1.584 -5.810 N17 VDN 17
VDN C18 C18 C 0 1 N N N 3.439 74.092 81.010 -0.065 -0.542 -6.109 C18 VDN 18
VDN C19 C19 C 0 1 N N N 3.172 72.602 80.707 -0.873 -0.223 -4.847 C19 VDN 19
VDN C20 C20 C 0 1 N N N 2.446 76.265 81.569 1.642 -1.856 -7.062 C20 VDN 20
VDN C21 C21 C 0 1 Y N N 1.702 66.271 84.553 -0.667 -0.133 2.034 C21 VDN 21
VDN N22 N22 N 0 1 Y N N 1.597 66.025 85.891 -1.199 -1.132 2.706 N22 VDN 22
VDN C23 C23 C 0 1 Y N N 0.815 65.023 86.515 -0.655 -1.575 3.855 C23 VDN 23
VDN C24 C24 C 0 1 Y N N 0.057 64.195 85.542 0.564 -0.928 4.357 C24 VDN 24
VDN N25 N25 N 0 1 Y N N 0.217 64.508 84.151 1.101 0.118 3.631 N25 VDN 25
VDN N26 N26 N 0 1 Y N N 0.997 65.498 83.691 0.462 0.510 2.450 N26 VDN 26
VDN O27 O27 O 0 1 N N N 0.789 64.885 87.721 -1.161 -2.501 4.464 O27 VDN 27
VDN C28 C28 C 0 1 Y N N -0.835 63.129 85.464 1.364 -1.101 5.440 C28 VDN 28
VDN N29 N29 N 0 1 Y N N -1.203 62.803 84.110 2.347 -0.199 5.366 N29 VDN 29
VDN C30 C30 C 0 1 Y N N -0.545 63.662 83.402 2.197 0.528 4.287 C30 VDN 30
VDN C31 C31 C 0 1 N N N -1.383 62.372 86.669 1.177 -2.126 6.530 C31 VDN 31
VDN C32 C32 C 0 1 N N N -0.544 63.806 81.886 3.105 1.650 3.856 C32 VDN 32
VDN C33 C33 C 0 1 N N N 0.581 63.056 81.129 4.217 1.092 2.964 C33 VDN 33
VDN C34 C34 C 0 1 N N N 0.200 61.591 80.911 5.140 2.232 2.526 C34 VDN 34
VDN H11 1H1 H 0 1 N N N 5.336 64.458 86.536 -6.798 -0.048 2.237 H11 VDN 35
VDN H12 2H1 H 0 1 N N N 6.656 65.377 87.499 -5.591 -1.221 2.813 H12 VDN 36
VDN H13 3H1 H 0 1 N N N 4.799 65.463 87.741 -5.543 0.461 3.391 H13 VDN 37
VDN H21 1H2 H 0 1 N N N 6.593 66.556 85.347 -5.008 1.234 1.097 H21 VDN 38
VDN H22 2H2 H 0 1 N N N 6.056 67.561 86.551 -5.056 -0.448 0.519 H22 VDN 39
VDN H5 H5 H 0 1 N N N 5.771 68.723 84.340 -4.389 0.835 -0.548 H5 VDN 40
VDN H6 H6 H 0 1 N N N 4.696 70.371 82.534 -3.005 1.459 -2.479 H6 VDN 41
VDN H8 H8 H 0 1 N N N 1.001 67.990 82.829 0.537 0.619 -0.263 H8 VDN 42
VDN H131 1H13 H 0 0 N N N 1.531 77.087 79.750 3.228 -3.141 -7.750 H131 VDN 43
VDN H132 2H13 H 0 0 N N N 2.670 78.273 80.544 3.400 -2.598 -6.064 H132 VDN 44
VDN H133 3H13 H 0 0 N N N 3.213 76.816 79.587 2.205 -3.851 -6.477 H133 VDN 45
VDN H151 1H15 H 0 0 N N N 0.606 72.250 82.942 1.930 -0.219 -2.874 H151 VDN 46
VDN H152 2H15 H 0 0 N N N 0.415 72.639 81.298 0.889 -1.650 -3.088 H152 VDN 47
VDN H161 1H16 H 0 0 N N N 2.046 74.321 83.380 2.718 -1.712 -4.730 H161 VDN 48
VDN H162 2H16 H 0 0 N N N 0.562 74.771 82.706 2.293 -0.079 -5.295 H162 VDN 49
VDN H181 1H18 H 0 0 N N N 4.173 74.208 81.841 -0.738 -0.894 -6.891 H181 VDN 50
VDN H182 2H18 H 0 0 N N N 4.022 74.571 80.189 0.446 0.357 -6.449 H182 VDN 51
VDN H191 1H19 H 0 0 N N N 2.677 72.475 79.716 -1.440 -1.103 -4.542 H191 VDN 52
VDN H192 2H19 H 0 0 N N N 4.122 72.056 80.503 -1.555 0.602 -5.046 H192 VDN 53
VDN H201 1H20 H 0 0 N N N 1.709 76.645 82.314 0.936 -2.197 -7.819 H201 VDN 54
VDN H202 2H20 H 0 0 N N N 3.391 76.374 82.151 2.131 -0.944 -7.406 H202 VDN 55
VDN H26 H26 H 0 1 N N N 1.646 65.105 83.009 0.822 1.242 1.926 H26 VDN 56
VDN H311 1H31 H 0 0 N N N -1.841 63.130 87.347 0.559 -1.704 7.323 H311 VDN 57
VDN H312 2H31 H 0 0 N N N -2.097 61.518 86.607 0.688 -3.009 6.118 H312 VDN 58
VDN H313 3H31 H 0 0 N N N -0.504 62.017 87.256 2.149 -2.405 6.936 H313 VDN 59
VDN H321 1H32 H 0 0 N N N -0.530 64.886 81.610 2.530 2.390 3.299 H321 VDN 60
VDN H322 2H32 H 0 0 N N N -1.538 63.507 81.478 3.546 2.119 4.735 H322 VDN 61
VDN H331 1H33 H 0 0 N N N 1.564 63.155 81.645 4.792 0.352 3.521 H331 VDN 62
VDN H332 2H33 H 0 0 N N N 0.844 63.562 80.171 3.776 0.623 2.085 H332 VDN 63
VDN H341 1H34 H 0 0 N N N -0.783 61.492 80.395 5.931 1.834 1.891 H341 VDN 64
VDN H342 2H34 H 0 0 N N N 1.010 61.051 80.366 4.564 2.971 1.970 H342 VDN 65
VDN H343 3H34 H 0 0 N N N -0.062 61.085 81.869 5.580 2.701 3.406 H343 VDN 66
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VDN C1 C2 SING N N 1
VDN C1 H11 SING N N 2
VDN C1 H12 SING N N 3
VDN C1 H13 SING N N 4
VDN C2 O3 SING N N 5
VDN C2 H21 SING N N 6
VDN C2 H22 SING N N 7
VDN O3 C4 SING N N 8
VDN C4 C5 DOUB Y N 9
VDN C4 C9 SING Y N 10
VDN C5 C6 SING Y N 11
VDN C5 H5 SING N N 12
VDN C6 C7 DOUB Y N 13
VDN C6 H6 SING N N 14
VDN C7 C8 SING Y N 15
VDN C7 S10 SING N N 16
VDN C8 C9 DOUB Y N 17
VDN C8 H8 SING N N 18
VDN C9 C21 SING Y N 19
VDN S10 O11 DOUB N N 20
VDN S10 O12 DOUB N N 21
VDN S10 N14 SING N N 22
VDN C13 C20 SING N N 23
VDN C13 H131 SING N N 24
VDN C13 H132 SING N N 25
VDN C13 H133 SING N N 26
VDN N14 C15 SING N N 27
VDN N14 C19 SING N N 28
VDN C15 C16 SING N N 29
VDN C15 H151 SING N N 30
VDN C15 H152 SING N N 31
VDN C16 N17 SING N N 32
VDN C16 H161 SING N N 33
VDN C16 H162 SING N N 34
VDN N17 C18 SING N N 35
VDN N17 C20 SING N N 36
VDN C18 C19 SING N N 37
VDN C18 H181 SING N N 38
VDN C18 H182 SING N N 39
VDN C19 H191 SING N N 40
VDN C19 H192 SING N N 41
VDN C20 H201 SING N N 42
VDN C20 H202 SING N N 43
VDN C21 N22 DOUB Y N 44
VDN C21 N26 SING Y N 45
VDN N22 C23 SING Y N 46
VDN C23 C24 SING Y N 47
VDN C23 O27 DOUB N N 48
VDN C24 N25 SING Y N 49
VDN C24 C28 DOUB Y N 50
VDN N25 N26 SING Y N 51
VDN N25 C30 SING Y N 52
VDN N26 H26 SING N N 53
VDN C28 N29 SING Y N 54
VDN C28 C31 SING N N 55
VDN N29 C30 DOUB Y N 56
VDN C30 C32 SING N N 57
VDN C31 H311 SING N N 58
VDN C31 H312 SING N N 59
VDN C31 H313 SING N N 60
VDN C32 C33 SING N N 61
VDN C32 H321 SING N N 62
VDN C32 H322 SING N N 63
VDN C33 C34 SING N N 64
VDN C33 H331 SING N N 65
VDN C33 H332 SING N N 66
VDN C34 H341 SING N N 67
VDN C34 H342 SING N N 68
VDN C34 H343 SING N N 69
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VDN SMILES ACDLabs 10.04 "O=C2N=C(Nn1c(nc(c12)C)CCC)c3cc(ccc3OCC)S(=O)(=O)N4CCN(CC)CC4"
VDN SMILES_CANONICAL CACTVS 3.341 "CCCc1nc(C)c2n1NC(=NC2=O)c3cc(ccc3OCC)[S](=O)(=O)N4CCN(CC)CC4"
VDN SMILES CACTVS 3.341 "CCCc1nc(C)c2n1NC(=NC2=O)c3cc(ccc3OCC)[S](=O)(=O)N4CCN(CC)CC4"
VDN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCc1nc(c2n1NC(=NC2=O)c3cc(ccc3OCC)S(=O)(=O)N4CCN(CC4)CC)C"
VDN SMILES "OpenEye OEToolkits" 1.5.0 "CCCc1nc(c2n1NC(=NC2=O)c3cc(ccc3OCC)S(=O)(=O)N4CCN(CC4)CC)C"
VDN InChI InChI 1.03 "InChI=1S/C23H32N6O4S/c1-5-8-20-24-16(4)21-23(30)25-22(26-29(20)21)18-15-17(9-10-19(18)33-7-3)34(31,32)28-13-11-27(6-2)12-14-28/h9-10,15H,5-8,11-14H2,1-4H3,(H,25,26,30)"
VDN InChIKey InChI 1.03 SECKRCOLJRRGGV-UHFFFAOYSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VDN "SYSTEMATIC NAME" ACDLabs 10.04 "2-{2-ethoxy-5-[(4-ethylpiperazin-1-yl)sulfonyl]phenyl}-5-methyl-7-propylimidazo[5,1-f][1,2,4]triazin-4(1H)-one"
VDN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[2-ethoxy-5-(4-ethylpiperazin-1-yl)sulfonyl-phenyl]-5-methyl-7-propyl-1H-imidazo[5,1-f][1,2,4]triazin-4-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VDN "Create component" 2003-07-10 PDBJ
VDN "Modify aromatic_flag" 2011-06-04 RCSB
VDN "Modify descriptor" 2011-06-04 RCSB
VDN "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id VDN
_pdbx_chem_comp_synonyms.name "VARDENAFIL, LEVITRA"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##