data_VDT # _chem_comp.id VDT _chem_comp.name "5-(2-cyclopropylethynyl)-6-(2-methoxyphenyl)pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-01 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 280.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8COQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDT C10 C1 C 0 1 Y N N N N N -6.968 -12.264 -12.567 1.919 3.018 -0.133 C10 VDT 1 VDT C13 C2 C 0 1 Y N N N N N -4.983 -10.715 -11.297 -0.067 1.631 1.226 C13 VDT 2 VDT C15 C3 C 0 1 N N N N N N -8.729 -8.337 -8.920 -5.130 0.293 -0.905 C15 VDT 3 VDT C01 C4 C 0 1 Y N N N N N -3.850 -8.084 -15.119 1.770 -2.615 0.398 C01 VDT 4 VDT C02 C5 C 0 1 Y N N N N N -5.072 -9.104 -13.306 0.762 -0.537 0.320 C02 VDT 5 VDT C03 C6 C 0 1 Y N N N N N -5.531 -7.879 -12.901 -0.462 -1.157 0.012 C03 VDT 6 VDT C04 C7 C 0 1 Y N N N N N -5.070 -6.820 -13.670 -0.487 -2.561 -0.090 C04 VDT 7 VDT C05 C8 C 0 1 N N N N N N -6.447 -7.644 -11.697 -1.649 -0.383 -0.194 C05 VDT 8 VDT C06 C9 C 0 1 N N N N N N -7.150 -7.430 -10.768 -2.622 0.252 -0.362 C06 VDT 9 VDT C07 C10 C 0 1 N N N N N N -8.075 -7.133 -9.587 -3.842 1.049 -0.573 C07 VDT 10 VDT C08 C11 C 0 1 Y N N N N N -5.503 -10.354 -12.545 0.851 0.935 0.440 C08 VDT 11 VDT C09 C12 C 0 1 Y N N N N N -6.483 -11.099 -13.171 1.847 1.638 -0.248 C09 VDT 12 VDT C11 C13 C 0 1 Y N N N N N -6.447 -12.628 -11.337 1.010 3.695 0.657 C11 VDT 13 VDT C12 C14 C 0 1 Y N N N N N -5.470 -11.877 -10.702 0.020 3.004 1.334 C12 VDT 14 VDT C14 C15 C 0 1 N N N N N N -7.848 -11.347 -15.146 3.727 1.756 -1.696 C14 VDT 15 VDT C16 C16 C 0 1 N N N N N N -7.523 -7.631 -8.253 -4.952 0.932 0.474 C16 VDT 16 VDT N01 N1 N 0 1 Y N N N N N -4.273 -6.894 -14.719 0.637 -3.240 0.109 N01 VDT 17 VDT N02 N2 N 0 1 Y N N N N N -4.298 -9.117 -14.385 1.841 -1.298 0.503 N02 VDT 18 VDT N03 N3 N 0 1 N N N N N N -5.535 -5.525 -13.233 -1.664 -3.223 -0.391 N03 VDT 19 VDT N04 N4 N 0 1 N N N N N N -2.974 -8.283 -16.276 2.914 -3.365 0.601 N04 VDT 20 VDT O01 O1 O 0 1 N N N N N N -6.903 -10.584 -14.422 2.740 0.972 -1.024 O01 VDT 21 VDT H1 H1 H 0 1 N N N N N N -7.728 -12.863 -13.047 2.688 3.563 -0.659 H1 VDT 22 VDT H2 H2 H 0 1 N N N N N N -4.229 -10.113 -10.811 -0.841 1.095 1.755 H2 VDT 23 VDT H3 H3 H 0 1 N N N N N N -9.733 -8.246 -8.480 -5.830 0.768 -1.593 H3 VDT 24 VDT H4 H4 H 0 1 N N N N N N -8.609 -9.340 -9.354 -5.075 -0.794 -0.966 H4 VDT 25 VDT H5 H5 H 0 1 N N N N N N -8.628 -6.182 -9.593 -3.694 2.021 -1.043 H5 VDT 26 VDT H6 H6 H 0 1 N N N N N N -6.813 -13.524 -10.858 1.072 4.769 0.747 H6 VDT 27 VDT H7 H7 H 0 1 N N N N N N -5.085 -12.193 -9.744 -0.692 3.542 1.942 H7 VDT 28 VDT H8 H8 H 0 1 N N N N N N -8.085 -10.837 -16.091 3.237 2.468 -2.359 H8 VDT 29 VDT H9 H9 H 0 1 N N N N N N -7.429 -12.341 -15.361 4.325 2.296 -0.961 H9 VDT 30 VDT H10 H10 H 0 1 N N N N N N -8.765 -11.457 -14.549 4.375 1.102 -2.280 H10 VDT 31 VDT H11 H11 H 0 1 N N N N N N -6.544 -8.131 -8.213 -5.533 1.827 0.693 H11 VDT 32 VDT H12 H12 H 0 1 N N N N N N -7.668 -7.036 -7.339 -4.778 0.266 1.319 H12 VDT 33 VDT H13 H13 H 0 1 N N N N N N -5.160 -4.816 -13.831 -2.480 -2.720 -0.535 H13 VDT 34 VDT H14 H14 H 0 1 N N N N N N -6.534 -5.499 -13.272 -1.672 -4.191 -0.459 H14 VDT 35 VDT H15 H15 H 0 1 N N N N N N -2.763 -7.398 -16.691 2.879 -4.332 0.532 H15 VDT 36 VDT H16 H16 H 0 1 N N N N N N -2.126 -8.724 -15.980 3.752 -2.925 0.814 H16 VDT 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDT N04 C01 SING N N 1 VDT C14 O01 SING N N 2 VDT C01 N01 DOUB Y N 3 VDT C01 N02 SING Y N 4 VDT N01 C04 SING Y N 5 VDT O01 C09 SING N N 6 VDT N02 C02 DOUB Y N 7 VDT C04 N03 SING N N 8 VDT C04 C03 DOUB Y N 9 VDT C02 C03 SING Y N 10 VDT C02 C08 SING N N 11 VDT C09 C10 DOUB Y N 12 VDT C09 C08 SING Y N 13 VDT C03 C05 SING N N 14 VDT C10 C11 SING Y N 15 VDT C08 C13 DOUB Y N 16 VDT C05 C06 TRIP N N 17 VDT C11 C12 DOUB Y N 18 VDT C13 C12 SING Y N 19 VDT C06 C07 SING N N 20 VDT C07 C15 SING N N 21 VDT C07 C16 SING N N 22 VDT C15 C16 SING N N 23 VDT C10 H1 SING N N 24 VDT C13 H2 SING N N 25 VDT C15 H3 SING N N 26 VDT C15 H4 SING N N 27 VDT C07 H5 SING N N 28 VDT C11 H6 SING N N 29 VDT C12 H7 SING N N 30 VDT C14 H8 SING N N 31 VDT C14 H9 SING N N 32 VDT C14 H10 SING N N 33 VDT C16 H11 SING N N 34 VDT C16 H12 SING N N 35 VDT N03 H13 SING N N 36 VDT N03 H14 SING N N 37 VDT N04 H15 SING N N 38 VDT N04 H16 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDT InChI InChI 1.06 "InChI=1S/C16H16N4O/c1-21-13-5-3-2-4-11(13)14-12(9-8-10-6-7-10)15(17)20-16(18)19-14/h2-5,10H,6-7H2,1H3,(H4,17,18,19,20)" VDT InChIKey InChI 1.06 ZJTKSYLILOEUOG-UHFFFAOYSA-N VDT SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1c2nc(N)nc(N)c2C#CC3CC3" VDT SMILES CACTVS 3.385 "COc1ccccc1c2nc(N)nc(N)c2C#CC3CC3" VDT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccccc1c2c(c(nc(n2)N)N)C#CC3CC3" VDT SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccccc1c2c(c(nc(n2)N)N)C#CC3CC3" # _pdbx_chem_comp_identifier.comp_id VDT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(2-cyclopropylethynyl)-6-(2-methoxyphenyl)pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDT "Create component" 2023-03-01 PDBE VDT "Initial release" 2024-03-06 RCSB #