data_VDU # _chem_comp.id VDU _chem_comp.name fluorolissoclimide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 F N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3R)-3-[(1S)-2-[(1R,3S,4aS,7S,8aS)-7-fluoranyl-5,5,8a-trimethyl-2-methylidene-3-oxidanyl-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl]-1-oxidanyl-ethyl]pyrrolidine-2,5-dione" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-12 _chem_comp.pdbx_modified_date 2025-06-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.455 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P85 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDU N N1 N 0 1 N N N N N N 195.038 41.733 180.711 4.307 0.396 1.126 N VDU 1 VDU C C1 C 0 1 N N N N N N 196.499 46.186 189.348 -4.446 1.881 -0.910 C VDU 2 VDU O O1 O 0 1 N N N N N N 194.568 41.224 189.117 -3.798 -3.178 0.222 O VDU 3 VDU C1 C2 C 0 1 N N N N N N 197.393 45.283 188.489 -3.171 1.706 -0.053 C1 VDU 4 VDU C10 C3 C 0 1 N N S N N N 196.553 44.162 187.774 -2.596 0.331 -0.326 C10 VDU 5 VDU C12 C4 C 0 1 N N N N N N 195.772 40.082 186.959 -1.133 -3.435 0.305 C12 VDU 6 VDU C13 C5 C 0 1 N N N N N N 197.220 41.496 184.938 0.748 -1.514 -0.002 C13 VDU 7 VDU C14 C6 C 0 1 N N S N N N 196.279 40.986 183.853 1.802 -0.798 -0.849 C14 VDU 8 VDU C15 C7 C 0 1 N N R N N N 195.812 42.088 182.893 3.193 -1.086 -0.281 C15 VDU 9 VDU C16 C8 C 0 1 N N N N N N 196.864 42.577 181.891 4.273 -0.332 -1.084 C16 VDU 10 VDU C17 C9 C 0 1 N N N N N N 196.270 42.304 180.533 4.904 0.584 -0.058 C17 VDU 11 VDU C18 C10 C 0 1 N N N N N N 194.683 41.567 182.028 3.333 -0.523 1.117 C18 VDU 12 VDU C19 C11 C 0 1 N N N N N N 198.508 42.481 187.608 -1.023 -0.031 1.633 C19 VDU 13 VDU C2 C12 C 0 1 N N N N N N 198.104 46.157 187.434 -2.212 2.822 -0.468 C2 VDU 14 VDU C20 C13 C 0 1 N N N N N N 198.452 44.684 189.423 -3.576 1.889 1.409 C20 VDU 15 VDU C3 C14 C 0 1 N N S N N N 198.973 45.297 186.543 -0.826 2.605 0.129 C3 VDU 16 VDU C4 C15 C 0 1 N N N N N N 198.185 44.209 185.851 -0.269 1.269 -0.363 C4 VDU 17 VDU C5 C16 C 0 1 N N S N N N 197.452 43.271 186.819 -1.157 0.120 0.118 C5 VDU 18 VDU C6 C17 C 0 1 N N R N N N 196.519 42.288 186.056 -0.647 -1.182 -0.536 C6 VDU 19 VDU C7 C18 C 0 1 N N N N N N 195.782 41.398 187.032 -1.594 -2.305 -0.182 C7 VDU 20 VDU C8 C19 C 0 1 N N S N N N 195.037 42.132 188.123 -3.076 -2.115 -0.403 C8 VDU 21 VDU C9 C20 C 0 1 N N N N N N 195.855 43.235 188.789 -3.501 -0.776 0.216 C9 VDU 22 VDU F F1 F 0 1 N N N N N N 199.554 46.123 185.558 0.026 3.637 -0.299 F VDU 23 VDU O1 O2 O 0 1 N N N N N N 193.625 41.077 182.415 2.670 -0.852 2.076 O1 VDU 24 VDU O2 O3 O 0 1 N N N N N N 196.788 42.545 179.446 5.806 1.364 -0.273 O2 VDU 25 VDU O3 O4 O 0 1 N N N N N N 196.939 39.958 183.113 1.731 -1.269 -2.196 O3 VDU 26 VDU H1 H1 H 0 1 N N N N N N 194.449 41.461 179.950 4.562 0.882 1.926 H1 VDU 27 VDU H2 H2 H 0 1 N N N N N N 195.984 45.578 190.106 -4.859 2.877 -0.750 H2 VDU 28 VDU H3 H3 H 0 1 N N N N N N 197.118 46.947 189.846 -4.196 1.757 -1.964 H3 VDU 29 VDU H4 H4 H 0 1 N N N N N N 195.754 46.681 188.707 -5.184 1.132 -0.622 H4 VDU 30 VDU H5 H5 H 0 1 N N N N N N 194.104 41.705 189.792 -3.573 -4.057 -0.113 H5 VDU 31 VDU H6 H6 H 0 1 N N N N N N 195.783 44.650 187.159 -2.596 0.205 -1.438 H6 VDU 32 VDU H7 H7 H 0 1 N N N N N N 195.223 39.505 187.689 -0.093 -3.518 0.584 H7 VDU 33 VDU H8 H8 H 0 1 N N N N N N 196.312 39.581 186.170 -1.794 -4.280 0.426 H8 VDU 34 VDU H9 H9 H 0 1 N N N N N N 197.725 40.631 185.392 0.910 -2.591 -0.054 H9 VDU 35 VDU H10 H10 H 0 1 N N N N N N 197.968 42.151 184.467 0.828 -1.184 1.034 H10 VDU 36 VDU H11 H11 H 0 1 N N N N N N 195.389 40.566 184.344 1.616 0.276 -0.829 H11 VDU 37 VDU H12 H12 H 0 1 N N N N N N 195.452 42.945 183.481 3.393 -2.157 -0.281 H12 VDU 38 VDU H13 H13 H 0 1 N N N N N N 197.806 42.023 182.019 5.012 -1.029 -1.481 H13 VDU 39 VDU H14 H14 H 0 1 N N N N N N 197.051 43.653 182.022 3.820 0.245 -1.890 H14 VDU 40 VDU H15 H15 H 0 1 N N N N N N 198.007 41.799 188.311 -1.475 0.831 2.125 H15 VDU 41 VDU H16 H16 H 0 1 N N N N N N 199.127 41.898 186.910 -1.531 -0.940 1.954 H16 VDU 42 VDU H17 H17 H 0 1 N N N N N N 199.146 43.180 188.168 0.032 -0.091 1.900 H17 VDU 43 VDU H18 H18 H 0 1 N N N N N N 198.732 46.903 187.943 -2.139 2.844 -1.559 H18 VDU 44 VDU H19 H19 H 0 1 N N N N N N 197.350 46.671 186.820 -2.610 3.781 -0.127 H19 VDU 45 VDU H20 H20 H 0 1 N N N N N N 197.960 44.057 190.182 -4.212 1.059 1.716 H20 VDU 46 VDU H21 H21 H 0 1 N N N N N N 199.152 44.069 188.838 -2.683 1.913 2.033 H21 VDU 47 VDU H22 H22 H 0 1 N N N N N N 199.004 45.496 189.920 -4.123 2.826 1.520 H22 VDU 48 VDU H23 H23 H 0 1 N N N N N N 199.757 44.830 187.157 -0.870 2.623 1.215 H23 VDU 49 VDU H24 H24 H 0 1 N N N N N N 197.440 44.683 185.195 -0.238 1.272 -1.454 H24 VDU 50 VDU H25 H25 H 0 1 N N N N N N 198.879 43.609 185.244 0.743 1.149 0.025 H25 VDU 51 VDU H26 H26 H 0 1 N N N N N N 195.758 42.910 185.563 -0.610 -1.052 -1.615 H26 VDU 52 VDU H27 H27 H 0 1 N N N N N N 194.165 42.614 187.656 -3.292 -2.105 -1.472 H27 VDU 53 VDU H28 H28 H 0 1 N N N N N N 196.623 42.768 189.423 -3.447 -0.847 1.297 H28 VDU 54 VDU H29 H29 H 0 1 N N N N N N 195.183 43.842 189.414 -4.539 -0.588 -0.069 H29 VDU 55 VDU H30 H30 H 0 1 N N N N N N 197.228 39.275 183.707 1.814 -2.229 -2.282 H30 VDU 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDU O2 C17 DOUB N N 1 VDU C17 N SING N N 2 VDU C17 C16 SING N N 3 VDU N C18 SING N N 4 VDU C16 C15 SING N N 5 VDU C18 O1 DOUB N N 6 VDU C18 C15 SING N N 7 VDU C15 C14 SING N N 8 VDU O3 C14 SING N N 9 VDU C14 C13 SING N N 10 VDU C13 C6 SING N N 11 VDU F C3 SING N N 12 VDU C4 C3 SING N N 13 VDU C4 C5 SING N N 14 VDU C6 C5 SING N N 15 VDU C6 C7 SING N N 16 VDU C3 C2 SING N N 17 VDU C5 C19 SING N N 18 VDU C5 C10 SING N N 19 VDU C12 C7 DOUB N N 20 VDU C7 C8 SING N N 21 VDU C2 C1 SING N N 22 VDU C10 C1 SING N N 23 VDU C10 C9 SING N N 24 VDU C8 C9 SING N N 25 VDU C8 O SING N N 26 VDU C1 C SING N N 27 VDU C1 C20 SING N N 28 VDU N H1 SING N N 29 VDU C H2 SING N N 30 VDU C H3 SING N N 31 VDU C H4 SING N N 32 VDU O H5 SING N N 33 VDU C10 H6 SING N N 34 VDU C12 H7 SING N N 35 VDU C12 H8 SING N N 36 VDU C13 H9 SING N N 37 VDU C13 H10 SING N N 38 VDU C14 H11 SING N N 39 VDU C15 H12 SING N N 40 VDU C16 H13 SING N N 41 VDU C16 H14 SING N N 42 VDU C19 H15 SING N N 43 VDU C19 H16 SING N N 44 VDU C19 H17 SING N N 45 VDU C2 H18 SING N N 46 VDU C2 H19 SING N N 47 VDU C20 H20 SING N N 48 VDU C20 H21 SING N N 49 VDU C20 H22 SING N N 50 VDU C3 H23 SING N N 51 VDU C4 H24 SING N N 52 VDU C4 H25 SING N N 53 VDU C6 H26 SING N N 54 VDU C8 H27 SING N N 55 VDU C9 H28 SING N N 56 VDU C9 H29 SING N N 57 VDU O3 H30 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDU InChI InChI 1.06 "InChI=1S/C20H30FNO4/c1-10-13(6-15(24)12-5-17(25)22-18(12)26)20(4)9-11(21)8-19(2,3)16(20)7-14(10)23/h11-16,23-24H,1,5-9H2,2-4H3,(H,22,25,26)/t11-,12+,13-,14-,15-,16-,20+/m0/s1" VDU InChIKey InChI 1.06 GYMIYUOGANGZND-LWHFJPTFSA-N VDU SMILES_CANONICAL CACTVS 3.385 "CC1(C)C[C@H](F)C[C@]2(C)[C@@H](C[C@H](O)[C@H]3CC(=O)NC3=O)C(=C)[C@@H](O)C[C@@H]12" VDU SMILES CACTVS 3.385 "CC1(C)C[CH](F)C[C]2(C)[CH](C[CH](O)[CH]3CC(=O)NC3=O)C(=C)[CH](O)C[CH]12" VDU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]12C[C@H](CC([C@@H]1C[C@@H](C(=C)[C@@H]2C[C@@H]([C@H]3CC(=O)NC3=O)O)O)(C)C)F" VDU SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CC(CC2(C1CC(C(=C)C2CC(C3CC(=O)NC3=O)O)O)C)F)C" # _pdbx_chem_comp_identifier.comp_id VDU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-[(1~{S})-2-[(1~{R},3~{S},4~{a}~{S},7~{S},8~{a}~{S})-7-fluoranyl-5,5,8~{a}-trimethyl-2-methylidene-3-oxidanyl-3,4,4~{a},6,7,8-hexahydro-1~{H}-naphthalen-1-yl]-1-oxidanyl-ethyl]pyrrolidine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDU "Create component" 2023-09-12 PDBE VDU "Initial release" 2025-06-25 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VDU _pdbx_chem_comp_synonyms.name "(3R)-3-[(1S)-2-[(1R,3S,4aS,7S,8aS)-7-fluoranyl-5,5,8a-trimethyl-2-methylidene-3-oxidanyl-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl]-1-oxidanyl-ethyl]pyrrolidine-2,5-dione" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #