data_VDW # _chem_comp.id VDW _chem_comp.name "[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-05-07 _chem_comp.pdbx_modified_date 2021-05-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6TK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDW N1 N1 N 1 1 N N N 20.852 5.450 -13.220 -4.751 2.226 -0.170 N1 VDW 1 VDW CA1 C1 C 0 1 N N S 19.681 4.744 -12.625 -4.783 0.775 -0.396 CA1 VDW 2 VDW C1 C2 C 0 1 N N N 19.473 3.417 -13.381 -5.992 0.187 0.283 C1 VDW 3 VDW O11 O1 O 0 1 N N N 18.334 3.178 -13.823 -6.542 0.796 1.171 O11 VDW 4 VDW O12 O2 O 0 1 N N N 20.474 2.643 -13.485 -6.459 -1.012 -0.097 O12 VDW 5 VDW CB1 C3 C 0 1 N N N 18.449 5.670 -12.545 -3.515 0.141 0.181 CB1 VDW 6 VDW CG1 C4 C 0 1 N N N 18.082 6.461 -13.803 -2.296 0.645 -0.594 CG1 VDW 7 VDW CD1 C5 C 0 1 N N N 17.200 7.645 -13.460 -1.047 0.021 -0.025 CD1 VDW 8 VDW OE1 O3 O 0 1 N N N 17.466 8.378 -12.517 -1.125 -0.751 0.907 OE1 VDW 9 VDW N2 N2 N 0 1 N N N 16.086 7.811 -14.183 0.156 0.320 -0.553 N2 VDW 10 VDW CA2 C6 C 0 1 N N R 15.385 9.081 -14.346 1.370 -0.287 -0.001 CA2 VDW 11 VDW C2 C7 C 0 1 N N N 14.490 9.551 -13.179 2.552 0.602 -0.290 C2 VDW 12 VDW O2 O4 O 0 1 N N N 13.739 8.768 -12.599 2.396 1.640 -0.898 O2 VDW 13 VDW CB2 C8 C 0 1 N N N 14.551 9.077 -15.616 1.593 -1.657 -0.643 CB2 VDW 14 VDW SG2 S1 S 0 1 N N N 14.203 10.723 -16.290 0.169 -2.727 -0.295 SG2 VDW 15 VDW N3 N3 N 0 1 N N N 14.537 10.850 -12.877 3.783 0.243 0.126 N3 VDW 16 VDW CA3 C9 C 0 1 N N N 13.670 11.439 -11.882 4.932 1.107 -0.155 CA3 VDW 17 VDW C3 C10 C 0 1 N N N 14.279 11.438 -10.482 6.181 0.483 0.413 C3 VDW 18 VDW O31 O5 O 0 1 N N N 15.334 10.789 -10.327 6.117 -0.575 0.994 O31 VDW 19 VDW O32 O6 O 0 1 N N N 13.685 12.099 -9.594 7.363 1.102 0.275 O32 VDW 20 VDW HN13 H1 H 0 0 N N N 21.000 6.314 -12.739 -3.941 2.620 -0.626 HN13 VDW 21 VDW HN11 H2 H 0 0 N N N 21.666 4.876 -13.133 -5.587 2.644 -0.551 HN11 VDW 22 VDW HN12 H3 H 0 0 N N N 20.675 5.633 -14.187 -4.703 2.411 0.820 HN12 VDW 23 VDW HA1 H4 H 0 1 N N N 19.948 4.481 -11.591 -4.834 0.575 -1.467 HA1 VDW 24 VDW H1 H5 H 0 1 N N N 20.219 1.856 -13.951 -7.238 -1.348 0.368 H1 VDW 25 VDW HB13 H6 H 0 0 N N N 18.634 6.397 -11.740 -3.418 0.416 1.231 HB13 VDW 26 VDW HB12 H7 H 0 0 N N N 17.582 5.045 -12.283 -3.579 -0.943 0.093 HB12 VDW 27 VDW HG13 H8 H 0 0 N N N 17.544 5.801 -14.499 -2.393 0.371 -1.644 HG13 VDW 28 VDW HG12 H9 H 0 0 N N N 19.003 6.825 -14.281 -2.232 1.730 -0.506 HG12 VDW 29 VDW HN2 H10 H 0 1 N N N 15.707 7.009 -14.644 0.219 0.937 -1.299 HN2 VDW 30 VDW HA2 H11 H 0 1 N N N 16.151 9.860 -14.478 1.259 -0.404 1.077 HA2 VDW 31 VDW HB23 H12 H 0 0 N N N 13.592 8.586 -15.396 1.704 -1.539 -1.721 HB23 VDW 32 VDW HB22 H13 H 0 0 N N N 15.092 8.500 -16.381 2.496 -2.109 -0.232 HB22 VDW 33 VDW HSG H14 H 0 1 N N N 13.495 10.440 -17.343 0.498 -3.877 -0.909 HSG VDW 34 VDW HN3 H15 H 0 1 N N N 15.193 11.435 -13.354 3.907 -0.587 0.613 HN3 VDW 35 VDW HA31 H16 H 0 0 N N N 13.460 12.479 -12.172 5.043 1.225 -1.233 HA31 VDW 36 VDW HA32 H17 H 0 0 N N N 12.730 10.869 -11.855 4.773 2.083 0.303 HA32 VDW 37 VDW H2 H18 H 0 1 N N N 14.163 12.032 -8.776 8.136 0.663 0.656 H2 VDW 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDW SG2 CB2 SING N N 1 VDW CB2 CA2 SING N N 2 VDW CA2 N2 SING N N 3 VDW CA2 C2 SING N N 4 VDW N2 CD1 SING N N 5 VDW O11 C1 DOUB N N 6 VDW CG1 CD1 SING N N 7 VDW CG1 CB1 SING N N 8 VDW O12 C1 SING N N 9 VDW CD1 OE1 DOUB N N 10 VDW C1 CA1 SING N N 11 VDW N1 CA1 SING N N 12 VDW C2 N3 SING N N 13 VDW C2 O2 DOUB N N 14 VDW N3 CA3 SING N N 15 VDW CA1 CB1 SING N N 16 VDW CA3 C3 SING N N 17 VDW C3 O31 DOUB N N 18 VDW C3 O32 SING N N 19 VDW N1 HN13 SING N N 20 VDW N1 HN11 SING N N 21 VDW N1 HN12 SING N N 22 VDW CA1 HA1 SING N N 23 VDW O12 H1 SING N N 24 VDW CB1 HB13 SING N N 25 VDW CB1 HB12 SING N N 26 VDW CG1 HG13 SING N N 27 VDW CG1 HG12 SING N N 28 VDW N2 HN2 SING N N 29 VDW CA2 HA2 SING N N 30 VDW CB2 HB23 SING N N 31 VDW CB2 HB22 SING N N 32 VDW SG2 HSG SING N N 33 VDW N3 HN3 SING N N 34 VDW CA3 HA31 SING N N 35 VDW CA3 HA32 SING N N 36 VDW O32 H2 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDW InChI InChI 1.03 "InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p+1/t5-,6-/m0/s1" VDW InChIKey InChI 1.03 RWSXRVCMGQZWBV-WDSKDSINSA-O VDW SMILES_CANONICAL CACTVS 3.385 "[NH3+][C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O)C(O)=O" VDW SMILES CACTVS 3.385 "[NH3+][CH](CCC(=O)N[CH](CS)C(=O)NCC(O)=O)C(O)=O" VDW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N[C@@H](CS)C(=O)NCC(=O)O)[C@@H](C(=O)O)[NH3+]" VDW SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)NC(CS)C(=O)NCC(=O)O)C(C(=O)O)[NH3+]" # _pdbx_chem_comp_identifier.comp_id VDW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDW "Create component" 2021-05-07 PDBE VDW "Initial release" 2021-05-26 RCSB ##