data_VE2
#
_chem_comp.id VE2
_chem_comp.name "5-[(E)-2-(3-carboxy-4-oxidanyl-phenyl)ethenyl]-2-oxidanyl-benzoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-07-21
_chem_comp.pdbx_modified_date 2025-01-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 300.263
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VE2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8K4K
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VE2 C10 C1 C 0 1 Y N N N N N -13.214 -0.602 8.766 -3.340 2.088 0.009 C10 VE2 1
VE2 C11 C2 C 0 1 Y N N N N N -12.399 0.252 9.491 -4.451 1.257 0.009 C11 VE2 2
VE2 C13 C3 C 0 1 Y N N N N N -12.852 1.500 9.848 -4.286 -0.136 0.007 C13 VE2 3
VE2 C14 C4 C 0 1 N N N N N N -11.882 2.372 10.638 -5.465 -1.021 0.007 C14 VE2 4
VE2 C17 C5 C 0 1 Y N N N N N -14.134 1.924 9.491 -3.003 -0.681 0.005 C17 VE2 5
VE2 C18 C6 C 0 1 Y N N N N N -19.094 2.063 7.800 2.071 -1.551 -0.001 C18 VE2 6
VE2 C02 C7 C 0 1 N N N N N N -20.505 5.883 9.182 5.465 1.021 0.009 C02 VE2 7
VE2 C03 C8 C 0 1 Y N N N N N -20.028 4.524 8.675 4.286 0.136 0.009 C03 VE2 8
VE2 C04 C9 C 0 1 Y N N N N N -18.770 4.104 9.025 3.003 0.681 0.000 C04 VE2 9
VE2 C05 C10 C 0 1 Y N N N N N -18.300 2.880 8.593 1.894 -0.163 0.001 C05 VE2 10
VE2 C06 C11 C 0 1 N N N N N N -16.884 2.497 9.032 0.534 0.407 0.003 C06 VE2 11
VE2 C07 C12 C 0 1 N N N N N N -16.385 1.472 8.335 -0.534 -0.407 0.003 C07 VE2 12
VE2 C08 C13 C 0 1 Y N N N N N -14.952 1.064 8.764 -1.894 0.163 0.005 C08 VE2 13
VE2 C09 C14 C 0 1 Y N N N N N -14.493 -0.199 8.405 -2.071 1.551 0.002 C09 VE2 14
VE2 C19 C15 C 0 1 Y N N N N N -20.376 2.489 7.445 3.340 -2.088 0.002 C19 VE2 15
VE2 C20 C16 C 0 1 Y N N N N N -20.835 3.725 7.887 4.451 -1.257 0.008 C20 VE2 16
VE2 O01 O1 O 0 1 N N N N N N -19.691 6.618 9.796 5.304 2.359 -0.001 O01 VE2 17
VE2 O12 O2 O 0 1 N N N N N N -11.102 -0.123 9.877 -5.698 1.792 0.010 O12 VE2 18
VE2 O15 O3 O 0 1 N N N N N N -12.164 3.571 10.898 -6.583 -0.544 0.008 O15 VE2 19
VE2 O16 O4 O 0 1 N N N N N N -10.785 1.875 11.015 -5.304 -2.359 0.006 O16 VE2 20
VE2 O21 O5 O 0 1 N N N N N N -22.104 4.197 7.553 5.698 -1.792 0.011 O21 VE2 21
VE2 O22 O6 O 0 1 N N N N N N -21.689 6.261 8.986 6.583 0.544 0.016 O22 VE2 22
VE2 H1 H1 H 0 1 N N N N N N -12.855 -1.580 8.482 -3.470 3.161 0.010 H1 VE2 23
VE2 H2 H2 H 0 1 N N N N N N -14.485 2.905 9.775 -2.868 -1.753 0.005 H2 VE2 24
VE2 H3 H3 H 0 1 N N N N N N -18.724 1.107 7.461 1.211 -2.204 -0.001 H3 VE2 25
VE2 H4 H4 H 0 1 N N N N N N -18.145 4.733 9.641 2.868 1.753 -0.007 H4 VE2 26
VE2 H5 H5 H 0 1 N N N N N N -16.346 3.002 9.821 0.397 1.478 0.004 H5 VE2 27
VE2 H7 H7 H 0 1 N N N N N N -16.929 0.974 7.546 -0.397 -1.478 0.002 H7 VE2 28
VE2 H9 H9 H 0 1 N N N N N N -15.131 -0.866 7.845 -1.211 2.204 -0.002 H9 VE2 29
VE2 H10 H10 H 0 1 N N N N N N -21.007 1.863 6.831 3.470 -3.161 0.001 H10 VE2 30
VE2 H11 H11 H 0 1 N N N N N N -20.121 7.427 10.048 6.107 2.898 -0.001 H11 VE2 31
VE2 H12 H12 H 0 1 N N N N N N -10.698 0.586 10.363 -6.060 1.948 -0.873 H12 VE2 32
VE2 H13 H13 H 0 1 N N N N N N -10.283 2.532 11.482 -6.107 -2.898 0.005 H13 VE2 33
VE2 H14 H14 H 0 1 N N N N N N -22.254 5.033 7.979 6.062 -1.945 -0.871 H14 VE2 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VE2 C19 C18 DOUB Y N 1
VE2 C19 C20 SING Y N 2
VE2 O21 C20 SING N N 3
VE2 C18 C05 SING Y N 4
VE2 C20 C03 DOUB Y N 5
VE2 C07 C08 SING N N 6
VE2 C07 C06 DOUB N E 7
VE2 C09 C08 DOUB Y N 8
VE2 C09 C10 SING Y N 9
VE2 C05 C04 DOUB Y N 10
VE2 C05 C06 SING N N 11
VE2 C03 C04 SING Y N 12
VE2 C03 C02 SING N N 13
VE2 C08 C17 SING Y N 14
VE2 C10 C11 DOUB Y N 15
VE2 O22 C02 DOUB N N 16
VE2 C02 O01 SING N N 17
VE2 C17 C13 DOUB Y N 18
VE2 C11 C13 SING Y N 19
VE2 C11 O12 SING N N 20
VE2 C13 C14 SING N N 21
VE2 C14 O15 DOUB N N 22
VE2 C14 O16 SING N N 23
VE2 C10 H1 SING N N 24
VE2 C17 H2 SING N N 25
VE2 C18 H3 SING N N 26
VE2 C04 H4 SING N N 27
VE2 C06 H5 SING N N 28
VE2 C07 H7 SING N N 29
VE2 C09 H9 SING N N 30
VE2 C19 H10 SING N N 31
VE2 O01 H11 SING N N 32
VE2 O12 H12 SING N N 33
VE2 O16 H13 SING N N 34
VE2 O21 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VE2 InChI InChI 1.06 "InChI=1S/C16H12O6/c17-13-5-3-9(7-11(13)15(19)20)1-2-10-4-6-14(18)12(8-10)16(21)22/h1-8,17-18H,(H,19,20)(H,21,22)/b2-1+"
VE2 InChIKey InChI 1.06 SEOGGUVUVSSDJX-OWOJBTEDSA-N
VE2 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cc(ccc1O)/C=C/c2ccc(O)c(c2)C(O)=O"
VE2 SMILES CACTVS 3.385 "OC(=O)c1cc(ccc1O)C=Cc2ccc(O)c(c2)C(O)=O"
VE2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1/C=C/c2ccc(c(c2)C(=O)O)O)C(=O)O)O"
VE2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C=Cc2ccc(c(c2)C(=O)O)O)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id VE2
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "5-[(~{E})-2-(3-carboxy-4-oxidanyl-phenyl)ethenyl]-2-oxidanyl-benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VE2 "Create component" 2023-07-21 PDBJ
VE2 "Initial release" 2025-01-22 RCSB
#