data_VE9
#
_chem_comp.id VE9
_chem_comp.name "N-{1-[(1R,2S)-2-fluorocyclopropyl]-2-oxo-1,2-dihydropyridin-3-yl}-2-[(1R,4r)-1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl]-6-[(propan-2-yl)oxy]-2H-pyrazolo[3,4-b]pyridine-5-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H26 F N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-12
_chem_comp.pdbx_modified_date 2024-06-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.493
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VE9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8TVN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VE9 N1 N1 N 0 1 N N N N N N 7.502 -10.725 1.475 -2.050 0.850 -0.881 N1 VE9 1
VE9 N3 N2 N 0 1 Y N N N N N 6.959 -4.318 3.927 4.304 0.557 0.067 N3 VE9 2
VE9 C4 C1 C 0 1 N N N N N N 6.651 -14.337 1.979 -5.388 1.712 -2.169 C4 VE9 3
VE9 C5 C2 C 0 1 N N N N N N 7.715 -14.899 1.356 -6.169 1.246 -1.168 C5 VE9 4
VE9 C6 C3 C 0 1 N N S N N N 9.822 -14.675 0.090 -6.492 0.164 0.997 C6 VE9 5
VE9 C7 C4 C 0 1 N N N N N N 9.679 -15.974 -0.610 -6.363 0.818 2.374 C7 VE9 6
VE9 C8 C5 C 0 1 N N R N N N 9.806 -14.716 -1.395 -7.590 1.102 1.505 C8 VE9 7
VE9 C10 C6 C 0 1 Y N N N N N 7.055 -8.478 2.280 -0.058 -0.501 -0.455 C10 VE9 8
VE9 C13 C7 C 0 1 Y N N N N N 6.092 -5.350 4.108 3.219 1.304 -0.167 C13 VE9 9
VE9 C15 C8 C 0 1 N N N N N N 8.092 -2.449 5.342 6.800 0.208 0.819 C15 VE9 10
VE9 C17 C9 C 0 1 N N N N N N 5.669 -2.575 5.250 5.879 2.433 0.969 C17 VE9 11
VE9 C20 C10 C 0 1 Y N N N N N 7.820 -5.900 2.801 2.645 -0.908 -0.023 C20 VE9 12
VE9 C21 C11 C 0 1 Y N N N N N 8.249 -7.910 1.739 0.509 -1.779 -0.242 C21 VE9 13
VE9 C22 C12 C 0 1 N N N N N N 10.290 -8.309 0.503 0.314 -4.135 -0.030 C22 VE9 14
VE9 C24 C13 C 0 1 N N N N N N 10.564 -9.061 -0.777 0.328 -4.443 1.469 C24 VE9 15
VE9 C1 C14 C 0 1 N N N N N N 6.616 -9.898 2.077 -1.509 -0.368 -0.678 C1 VE9 16
VE9 C11 C15 C 0 1 Y N N N N N 6.236 -7.704 3.082 0.748 0.628 -0.454 C11 VE9 17
VE9 C12 C16 C 0 1 Y N N N N N 6.607 -6.390 3.350 2.128 0.453 -0.237 C12 VE9 18
VE9 C14 C17 C 0 1 N N N N N N 6.929 -2.989 4.504 5.666 1.077 0.211 C14 VE9 19
VE9 C16 C18 C 0 1 N N N N N N 7.343 -1.145 5.012 7.674 1.291 0.140 C16 VE9 20
VE9 C18 C19 C 0 1 N N N N N N 7.884 0.262 5.173 9.154 1.011 -0.125 C18 VE9 21
VE9 C19 C20 C 0 1 N N N N N N 7.179 -1.750 3.598 6.641 1.088 -1.007 C19 VE9 22
VE9 C2 C21 C 0 1 N N N N N N 7.499 -12.122 1.467 -3.440 0.989 -0.988 C2 VE9 23
VE9 C23 C22 C 0 1 N N N N N N 11.197 -8.649 1.650 -0.477 -5.218 -0.766 C23 VE9 24
VE9 C3 C23 C 0 1 N N N N N N 6.514 -12.949 2.056 -3.994 1.585 -2.088 C3 VE9 25
VE9 C9 C24 C 0 1 N N N N N N 8.588 -12.711 0.838 -4.286 0.525 0.043 C9 VE9 26
VE9 F1 F1 F 0 1 N N N N N N 8.727 -14.202 -2.042 -7.684 2.366 0.913 F1 VE9 27
VE9 N2 N3 N 0 1 N N N N N N 8.665 -14.094 0.771 -5.621 0.659 -0.072 N2 VE9 28
VE9 N4 N4 N 0 1 Y N N N N N 8.051 -4.632 3.149 3.946 -0.792 0.159 N4 VE9 29
VE9 N5 N5 N 0 1 Y N N N N N 8.601 -6.662 1.986 1.793 -1.949 -0.039 N5 VE9 30
VE9 O1 O1 O 0 1 N N N N N N 5.579 -10.302 2.582 -2.217 -1.357 -0.679 O1 VE9 31
VE9 O2 O2 O 0 1 N N N N N N 9.476 -12.037 0.278 -3.808 -0.002 1.035 O2 VE9 32
VE9 O3 O3 O 0 1 N N N N N N 6.089 -1.277 5.653 7.343 2.516 0.863 O3 VE9 33
VE9 O4 O4 O 0 1 N N N N N N 8.988 -8.738 0.944 -0.302 -2.864 -0.249 O4 VE9 34
VE9 H1 H1 H 0 1 N N N N N N 8.248 -10.283 0.976 -1.478 1.630 -0.950 H1 VE9 35
VE9 H3 H2 H 0 1 N N N N N N 5.898 -14.971 2.422 -5.838 2.176 -3.034 H3 VE9 36
VE9 H4 H3 H 0 1 N N N N N N 7.817 -15.974 1.319 -7.243 1.343 -1.240 H4 VE9 37
VE9 H5 H4 H 0 1 N N N N N N 10.802 -14.486 0.552 -6.717 -0.902 0.965 H5 VE9 38
VE9 H6 H5 H 0 1 N N N N N N 10.505 -16.700 -0.597 -6.502 0.183 3.248 H6 VE9 39
VE9 H7 H6 H 0 1 N N N N N N 8.719 -16.511 -0.583 -5.629 1.617 2.485 H7 VE9 40
VE9 H8 H7 H 0 1 N N N N N N 10.789 -14.570 -1.867 -8.536 0.653 1.807 H8 VE9 41
VE9 H10 H8 H 0 1 N N N N N N 5.196 -5.358 4.711 3.198 2.378 -0.279 H10 VE9 42
VE9 H11 H9 H 0 1 N N N N N N 8.112 -2.747 6.401 6.839 0.213 1.908 H11 VE9 43
VE9 H12 H10 H 0 1 N N N N N N 9.098 -2.558 4.911 6.892 -0.787 0.384 H12 VE9 44
VE9 H13 H11 H 0 1 N N N N N N 5.460 -3.230 6.109 5.402 3.261 0.445 H13 VE9 45
VE9 H14 H12 H 0 1 N N N N N N 4.788 -2.541 4.592 5.537 2.370 2.002 H14 VE9 46
VE9 H20 H13 H 0 1 N N N N N N 10.307 -7.225 0.315 1.337 -4.113 -0.406 H20 VE9 47
VE9 H25 H14 H 0 1 N N N N N N 11.552 -8.775 -1.167 0.798 -5.413 1.636 H25 VE9 48
VE9 H26 H15 H 0 1 N N N N N N 10.548 -10.143 -0.577 0.892 -3.672 1.993 H26 VE9 49
VE9 H24 H16 H 0 1 N N N N N N 9.791 -8.814 -1.520 -0.695 -4.465 1.845 H24 VE9 50
VE9 H9 H17 H 0 1 N N N N N N 5.325 -8.112 3.493 0.331 1.610 -0.616 H9 VE9 51
VE9 H17 H18 H 0 1 N N N N N N 7.120 0.988 4.856 9.249 0.144 -0.778 H17 VE9 52
VE9 H15 H19 H 0 1 N N N N N N 8.141 0.437 6.228 9.608 1.878 -0.606 H15 VE9 53
VE9 H16 H20 H 0 1 N N N N N N 8.784 0.382 4.552 9.661 0.813 0.819 H16 VE9 54
VE9 H19 H21 H 0 1 N N N N N N 6.324 -1.393 3.005 6.726 0.136 -1.530 H19 VE9 55
VE9 H18 H22 H 0 1 N N N N N N 8.079 -1.776 2.966 6.527 1.944 -1.672 H18 VE9 56
VE9 H22 H23 H 0 1 N N N N N N 12.228 -8.354 1.403 -1.500 -5.240 -0.389 H22 VE9 57
VE9 H21 H24 H 0 1 N N N N N N 10.867 -8.110 2.550 -0.488 -4.999 -1.833 H21 VE9 58
VE9 H23 H25 H 0 1 N N N N N N 11.161 -9.732 1.837 -0.008 -6.188 -0.599 H23 VE9 59
VE9 H2 H26 H 0 1 N N N N N N 5.665 -12.512 2.560 -3.365 1.954 -2.884 H2 VE9 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VE9 O1 C1 DOUB N N 1
VE9 C1 N1 SING N N 2
VE9 N1 C2 SING N N 3
VE9 C2 C3 DOUB N N 4
VE9 C3 C4 SING N N 5
VE9 C4 C5 DOUB N N 6
VE9 C5 N2 SING N N 7
VE9 N2 C6 SING N N 8
VE9 C6 C7 SING N N 9
VE9 C7 C8 SING N N 10
VE9 C8 F1 SING N N 11
VE9 N2 C9 SING N N 12
VE9 C9 O2 DOUB N N 13
VE9 C1 C10 SING N N 14
VE9 C10 C11 DOUB Y N 15
VE9 C11 C12 SING Y N 16
VE9 C12 C13 DOUB Y N 17
VE9 C13 N3 SING Y N 18
VE9 N3 C14 SING N N 19
VE9 C14 C15 SING N N 20
VE9 C15 C16 SING N N 21
VE9 C16 O3 SING N N 22
VE9 O3 C17 SING N N 23
VE9 C16 C18 SING N N 24
VE9 C16 C19 SING N N 25
VE9 N3 N4 SING Y N 26
VE9 C12 C20 SING Y N 27
VE9 C20 N5 SING Y N 28
VE9 N5 C21 DOUB Y N 29
VE9 C21 O4 SING N N 30
VE9 O4 C22 SING N N 31
VE9 C22 C23 SING N N 32
VE9 C22 C24 SING N N 33
VE9 C2 C9 SING N N 34
VE9 C6 C8 SING N N 35
VE9 C10 C21 SING Y N 36
VE9 C14 C17 SING N N 37
VE9 C14 C19 SING N N 38
VE9 N4 C20 DOUB Y N 39
VE9 N1 H1 SING N N 40
VE9 C4 H3 SING N N 41
VE9 C5 H4 SING N N 42
VE9 C6 H5 SING N N 43
VE9 C7 H6 SING N N 44
VE9 C7 H7 SING N N 45
VE9 C8 H8 SING N N 46
VE9 C13 H10 SING N N 47
VE9 C15 H11 SING N N 48
VE9 C15 H12 SING N N 49
VE9 C17 H13 SING N N 50
VE9 C17 H14 SING N N 51
VE9 C22 H20 SING N N 52
VE9 C24 H25 SING N N 53
VE9 C24 H26 SING N N 54
VE9 C24 H24 SING N N 55
VE9 C11 H9 SING N N 56
VE9 C18 H17 SING N N 57
VE9 C18 H15 SING N N 58
VE9 C18 H16 SING N N 59
VE9 C19 H19 SING N N 60
VE9 C19 H18 SING N N 61
VE9 C23 H22 SING N N 62
VE9 C23 H21 SING N N 63
VE9 C23 H23 SING N N 64
VE9 C3 H2 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VE9 SMILES ACDLabs 12.01 "FC1CC1N1C=CC=C(NC(=O)c2cc3cn(nc3nc2OC(C)C)C23CC(C)(C2)OC3)C1=O"
VE9 InChI InChI 1.06 "InChI=1S/C24H26FN5O4/c1-13(2)34-21-15(20(31)26-17-5-4-6-29(22(17)32)18-8-16(18)25)7-14-9-30(28-19(14)27-21)24-10-23(3,11-24)33-12-24/h4-7,9,13,16,18H,8,10-12H2,1-3H3,(H,26,31)/t16?,18-,23-,24-/m0/s1"
VE9 InChIKey InChI 1.06 YRZABOXBJPGNGN-JFHOTQKMSA-N
VE9 SMILES_CANONICAL CACTVS 3.385 "CC(C)Oc1nc2nn(cc2cc1C(=O)NC3=CC=CN([C@H]4C[C@H]4F)C3=O)C56COC(C)(C5)C6"
VE9 SMILES CACTVS 3.385 "CC(C)Oc1nc2nn(cc2cc1C(=O)NC3=CC=CN([CH]4C[CH]4F)C3=O)C56COC(C)(C5)C6"
VE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1c(cc2cn(nc2n1)C34CC(C3)(OC4)C)C(=O)NC5=CC=CN(C5=O)[C@H]6C[C@H]6F"
VE9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1c(cc2cn(nc2n1)C34CC(C3)(OC4)C)C(=O)NC5=CC=CN(C5=O)C6CC6F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VE9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{1-[(1R,2S)-2-fluorocyclopropyl]-2-oxo-1,2-dihydropyridin-3-yl}-2-[(1R,4r)-1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl]-6-[(propan-2-yl)oxy]-2H-pyrazolo[3,4-b]pyridine-5-carboxamide"
VE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[1-[(1~{S},2~{R})-2-fluoranylcyclopropyl]-2-oxidanylidene-pyridin-3-yl]-2-(1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl)-6-propan-2-yloxy-pyrazolo[3,4-b]pyridine-5-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VE9 "Create component" 2023-09-12 RCSB
VE9 "Initial release" 2024-06-26 RCSB
#