data_VEB # _chem_comp.id VEB _chem_comp.name "[oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H21 O26 P7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PCP-InsP7 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-11 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 738.042 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VEB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AUP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VEB C1 C1 C 0 1 N N N 8.284 -16.043 2.353 -0.759 -0.130 -0.351 C1 VEB 1 VEB C2 C2 C 0 1 N N S 6.778 -15.904 2.257 0.053 -1.380 -0.006 C2 VEB 2 VEB C3 C3 C 0 1 N N S 6.240 -17.262 1.834 1.460 -1.252 -0.593 C3 VEB 3 VEB C4 C4 C 0 1 N N N 6.679 -18.381 2.769 2.148 -0.018 -0.005 C4 VEB 4 VEB C5 C5 C 0 1 N N R 8.180 -18.365 3.031 1.336 1.232 -0.350 C5 VEB 5 VEB C6 C6 C 0 1 N N S 8.685 -16.999 3.455 -0.071 1.104 0.237 C6 VEB 6 VEB CB1 C7 C 0 1 N N N 9.866 -12.955 0.667 -4.859 -0.553 0.346 CB1 VEB 7 VEB O11 O1 O 0 1 N N N 8.958 -14.750 2.446 -2.073 -0.249 0.198 O11 VEB 8 VEB O12 O2 O 0 1 N N N 6.198 -15.493 3.544 0.140 -1.514 1.414 O12 VEB 9 VEB O13 O3 O 0 1 N N N 4.778 -17.231 1.762 2.218 -2.419 -0.270 O13 VEB 10 VEB O14 O4 O 0 1 N N N 6.386 -19.643 2.080 3.462 0.101 -0.553 O14 VEB 11 VEB O15 O5 O 0 1 N N N 8.498 -19.338 4.064 1.978 2.384 0.199 O15 VEB 12 VEB O16 O6 O 0 1 N N N 10.152 -17.076 3.529 -0.830 2.271 -0.085 O16 VEB 13 VEB O21 O7 O 0 1 N N N 11.332 -15.052 1.527 -3.560 1.217 -1.401 O21 VEB 14 VEB O22 O8 O 0 1 N N N 5.214 -13.597 2.165 0.182 -4.027 1.651 O22 VEB 15 VEB O23 O9 O 0 1 N N N 3.342 -18.767 0.436 3.743 -4.523 -0.672 O23 VEB 16 VEB O24 O10 O 0 1 N N N 4.490 -21.113 1.656 4.699 1.122 1.396 O24 VEB 17 VEB O25 O11 O 0 1 N N N 10.868 -19.873 4.435 3.687 3.102 -1.665 O25 VEB 18 VEB O26 O12 O 0 1 N N N 11.853 -15.439 4.241 -2.311 2.452 1.951 O26 VEB 19 VEB O31 O13 O 0 1 N N N 9.421 -15.425 -0.083 -3.310 -1.270 -1.752 O31 VEB 20 VEB O32 O14 O 0 1 N N N 4.478 -13.974 4.545 -0.039 -2.671 3.769 O32 VEB 21 VEB O33 O15 O 0 1 N N N 3.449 -16.307 -0.093 1.665 -4.091 -2.223 O33 VEB 22 VEB O34 O16 O 0 1 N N N 6.289 -21.829 3.260 4.949 -1.365 1.045 O34 VEB 23 VEB O35 O17 O 0 1 N N N 9.928 -20.259 2.132 1.384 4.126 -1.528 O35 VEB 24 VEB O36 O18 O 0 1 N N N 11.811 -17.731 5.277 -0.276 3.943 1.867 O36 VEB 25 VEB O42 O19 O 0 1 N N N 6.809 -13.139 4.056 -2.023 -2.866 2.054 O42 VEB 26 VEB O43 O20 O 0 1 N N N 5.393 -17.803 -0.659 3.700 -2.600 -2.306 O43 VEB 27 VEB O44 O21 O 0 1 N N N 4.641 -20.035 3.921 6.078 0.367 -0.579 O44 VEB 28 VEB O45 O22 O 0 1 N N N 9.195 -21.685 4.086 3.049 4.785 0.252 O45 VEB 29 VEB O46 O23 O 0 1 N N N 10.021 -16.051 5.861 -2.355 4.375 0.316 O46 VEB 30 VEB O51 O24 O 0 1 N N N 11.317 -10.825 0.287 -6.509 0.799 -1.316 O51 VEB 31 VEB O71 O25 O 0 1 N N N 10.592 -11.240 2.666 -6.263 -1.663 -1.814 O71 VEB 32 VEB O61 O26 O 0 1 N N N 12.325 -12.733 1.593 -7.650 -0.817 0.252 O61 VEB 33 VEB PA1 P1 P 0 1 N N N 9.904 -14.688 1.160 -3.406 -0.227 -0.706 PA1 VEB 34 VEB PB1 P2 P 0 1 N N N 11.102 -11.858 1.375 -6.367 -0.529 -0.677 PB1 VEB 35 VEB PA2 P3 P 0 1 N N N 5.649 -13.994 3.569 -0.422 -2.796 2.210 PA2 VEB 36 VEB PA3 P4 P 0 1 N N N 4.235 -17.546 0.297 2.850 -3.391 -1.388 PA3 VEB 37 VEB PA4 P5 P 0 1 N N N 5.409 -20.685 2.782 4.795 0.079 0.350 PA4 VEB 38 VEB PA5 P6 P 0 1 N N N 9.671 -20.319 3.634 2.500 3.611 -0.704 PA5 VEB 39 VEB PA6 P7 P 0 1 N N N 10.975 -16.558 4.794 -1.461 3.243 1.032 PA6 VEB 40 VEB H1 H1 H 0 1 N N N 8.611 -16.506 1.410 -0.825 -0.027 -1.434 H1 VEB 41 VEB H2 H2 H 0 1 N N N 6.532 -15.162 1.483 -0.437 -2.259 -0.424 H2 VEB 42 VEB H3 H3 H 0 1 N N N 6.636 -17.485 0.832 1.394 -1.149 -1.676 H3 VEB 43 VEB H4 H4 H 0 1 N N N 6.129 -18.317 3.720 2.214 -0.121 1.078 H4 VEB 44 VEB H5 H5 H 0 1 N N N 8.693 -18.648 2.100 1.270 1.334 -1.433 H5 VEB 45 VEB H6 H6 H 0 1 N N N 8.245 -16.698 4.417 -0.005 1.001 1.320 H6 VEB 46 VEB H7 H7 H 0 1 N N N 9.985 -12.922 -0.426 -4.754 -1.531 0.817 H7 VEB 47 VEB H8 H8 H 0 1 N N N 8.878 -12.557 0.941 -4.929 0.215 1.116 H8 VEB 48 VEB H9 H9 H 0 1 N N N 11.669 -15.684 0.903 -3.628 1.950 -0.774 H9 VEB 49 VEB H10 H10 H 0 1 N N N 3.679 -19.470 -0.107 4.156 -5.145 -1.286 H10 VEB 50 VEB H11 H11 H 0 1 N N N 11.573 -19.633 3.845 4.453 2.750 -1.192 H11 VEB 51 VEB H12 H12 H 0 1 N N N 3.688 -13.714 4.087 -0.347 -3.411 4.310 H12 VEB 52 VEB H13 H13 H 0 1 N N N 3.833 -15.920 -0.871 1.067 -4.627 -1.683 H13 VEB 53 VEB H14 H14 H 0 1 N N N 6.095 -22.610 2.756 5.017 -2.098 0.418 H14 VEB 54 VEB H15 H15 H 0 1 N N N 12.732 -17.541 5.141 0.321 4.479 1.328 H15 VEB 55 VEB H16 H16 H 0 1 N N N 7.045 -12.511 3.383 -2.486 -2.090 2.400 H16 VEB 56 VEB H17 H17 H 0 1 N N N 3.715 -20.019 3.710 6.918 0.369 -0.100 H17 VEB 57 VEB H18 H18 H 0 1 N N N 9.142 -22.266 3.337 3.381 5.557 -0.226 H18 VEB 58 VEB H19 H19 H 0 1 N N N 10.152 -15.118 5.986 -2.767 4.997 0.931 H19 VEB 59 VEB H20 H20 H 0 1 N N N 10.499 -10.301 2.553 -6.168 -2.561 -1.467 H20 VEB 60 VEB H21 H21 H 0 1 N N N 13.015 -12.468 0.996 -8.490 -0.819 -0.227 H21 VEB 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VEB O43 PA3 DOUB N N 1 VEB O33 PA3 SING N N 2 VEB O31 PA1 DOUB N N 3 VEB O51 PB1 DOUB N N 4 VEB PA3 O23 SING N N 5 VEB PA3 O13 SING N N 6 VEB CB1 PA1 SING N N 7 VEB CB1 PB1 SING N N 8 VEB PA1 O21 SING N N 9 VEB PA1 O11 SING N N 10 VEB PB1 O61 SING N N 11 VEB PB1 O71 SING N N 12 VEB O24 PA4 DOUB N N 13 VEB O13 C3 SING N N 14 VEB C3 C2 SING N N 15 VEB C3 C4 SING N N 16 VEB O14 C4 SING N N 17 VEB O14 PA4 SING N N 18 VEB O35 PA5 DOUB N N 19 VEB O22 PA2 DOUB N N 20 VEB C2 C1 SING N N 21 VEB C2 O12 SING N N 22 VEB C1 O11 SING N N 23 VEB C1 C6 SING N N 24 VEB C4 C5 SING N N 25 VEB PA4 O34 SING N N 26 VEB PA4 O44 SING N N 27 VEB C5 C6 SING N N 28 VEB C5 O15 SING N N 29 VEB C6 O16 SING N N 30 VEB O16 PA6 SING N N 31 VEB O12 PA2 SING N N 32 VEB PA2 O42 SING N N 33 VEB PA2 O32 SING N N 34 VEB PA5 O15 SING N N 35 VEB PA5 O45 SING N N 36 VEB PA5 O25 SING N N 37 VEB O26 PA6 DOUB N N 38 VEB PA6 O36 SING N N 39 VEB PA6 O46 SING N N 40 VEB C1 H1 SING N N 41 VEB C2 H2 SING N N 42 VEB C3 H3 SING N N 43 VEB C4 H4 SING N N 44 VEB C5 H5 SING N N 45 VEB C6 H6 SING N N 46 VEB CB1 H7 SING N N 47 VEB CB1 H8 SING N N 48 VEB O21 H9 SING N N 49 VEB O23 H10 SING N N 50 VEB O25 H11 SING N N 51 VEB O32 H12 SING N N 52 VEB O33 H13 SING N N 53 VEB O34 H14 SING N N 54 VEB O36 H15 SING N N 55 VEB O42 H16 SING N N 56 VEB O44 H17 SING N N 57 VEB O45 H18 SING N N 58 VEB O46 H19 SING N N 59 VEB O71 H20 SING N N 60 VEB O61 H21 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VEB InChI InChI 1.03 "InChI=1S/C7H21O26P7/c8-34(9,10)1-35(11,12)28-2-3(29-36(13,14)15)5(31-38(19,20)21)7(33-40(25,26)27)6(32-39(22,23)24)4(2)30-37(16,17)18/h2-7H,1H2,(H,11,12)(H2,8,9,10)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)/t2-,3-,4-,5+,6-,7-/m0/s1" VEB InChIKey InChI 1.03 IZNCMXVIYGYGJI-GESKJZQWSA-N VEB SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O[P](O)(O)=O" VEB SMILES CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" VEB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(P(=O)(O)O)P(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" VEB SMILES "OpenEye OEToolkits" 2.0.7 "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id VEB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VEB _pdbx_chem_comp_synonyms.name PCP-InsP7 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VEB "Create component" 2021-05-11 PDBE VEB "Initial release" 2021-05-19 RCSB ##