data_VEF # _chem_comp.id VEF _chem_comp.name "(3S)-3-azanyl-2,2-bis(oxidanyl)butanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H9 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S)-3-azanyl-2-oxidanylidene-butanoic acid (precursor); (3S)-3-amino-2-oxobutanoic acid (precursor); (2R,3S)-3-azanyl-2-oxidanyl-butanoic acid (reacted)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-03 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 135.119 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8COY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VEF N N N 0 1 N N N Y Y N 24.335 -48.978 -30.910 -2.436 0.154 0.374 N VEF 1 VEF C C1 C 0 1 N N N Y N Y 23.456 -46.146 -33.263 1.315 -0.097 0.079 C1 VEF 2 VEF CA CA C 0 1 N N S Y N N 24.190 -47.571 -31.236 -1.104 -0.452 0.497 CA VEF 3 VEF CB CB C 0 1 N N N N N N 25.390 -46.744 -30.769 -1.095 -1.813 -0.203 CB VEF 4 VEF O O O 0 1 N N N Y N Y 24.122 -45.111 -33.188 2.046 -0.312 -0.858 O VEF 5 VEF C2 C2 C 0 1 N N N Y N N 23.850 -47.421 -32.710 -0.065 0.463 -0.154 C2 VEF 6 VEF O2 O2 O 0 1 N N N N N N 23.341 -48.438 -33.259 -0.152 1.768 0.421 O2 VEF 7 VEF OXT OXT O 0 1 N Y N Y N Y 22.222 -46.200 -33.771 1.731 -0.357 1.329 OXT VEF 8 VEF H H H 0 1 N N N Y Y N 24.559 -49.075 -29.940 -3.140 -0.432 0.797 H VEF 9 VEF H2 H2 H 0 1 N Y N Y Y N 23.478 -49.455 -31.103 -2.450 1.081 0.772 H2 VEF 10 VEF HA HA H 0 1 N N N Y N N 23.320 -47.196 -30.677 -0.861 -0.585 1.551 HA VEF 11 VEF HB1 HB1 H 0 1 N N N N N N 25.559 -46.916 -29.696 -1.338 -1.680 -1.257 HB1 VEF 12 VEF HB2 HB2 H 0 1 N N N N N N 26.285 -47.045 -31.334 -0.107 -2.262 -0.111 HB2 VEF 13 VEF HB3 HB3 H 0 1 N N N N N N 25.189 -45.676 -30.942 -1.836 -2.464 0.261 HB3 VEF 14 VEF HXT HXT H 0 1 N Y N Y N Y 21.957 -45.333 -34.054 2.624 -0.716 1.428 HXT VEF 15 VEF O1 O1 O 0 1 N Y N N N N 24.871 -47.473 -33.116 -0.315 0.543 -1.559 O1 VEF 16 VEF HO2 HO2 H 0 1 N N N N N N 23.658 -49.223 -32.828 0.007 1.789 1.374 HO2 VEF 17 VEF HO1 HO1 H 0 1 N Y N N N N 25.156 -46.603 -33.370 -0.271 -0.308 -2.016 HO1 VEF 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VEF C O DOUB N N 1 VEF C C2 SING N N 2 VEF O2 C2 SING N N 3 VEF C2 CA SING N N 4 VEF CA N SING N N 5 VEF CA CB SING N N 6 VEF C OXT SING N N 7 VEF N H SING N N 8 VEF N H2 SING N N 9 VEF CA HA SING N N 10 VEF CB HB1 SING N N 11 VEF CB HB2 SING N N 12 VEF CB HB3 SING N N 13 VEF OXT HXT SING N N 14 VEF C2 O1 SING N N 15 VEF O2 HO2 SING N N 16 VEF O1 HO1 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VEF InChI InChI 1.06 "InChI=1S/C4H9NO4/c1-2(5)4(8,9)3(6)7/h2,8-9H,5H2,1H3,(H,6,7)/t2-/m0/s1" VEF InChIKey InChI 1.06 LHXALDSAESJJGU-REOHCLBHSA-N VEF SMILES_CANONICAL CACTVS 3.385 "C[C@H](N)C(O)(O)C(O)=O" VEF SMILES CACTVS 3.385 "C[CH](N)C(O)(O)C(O)=O" VEF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(C(=O)O)(O)O)N" VEF SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)O)(O)O)N" # _pdbx_chem_comp_identifier.comp_id VEF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-azanyl-2,2-bis(oxidanyl)butanoic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VEF "(3S)-3-azanyl-2-oxidanylidene-butanoic acid (precursor)" AUTHOR ? 2 VEF "(3S)-3-amino-2-oxobutanoic acid (precursor)" AUTHOR ? 3 VEF "(2R,3S)-3-azanyl-2-oxidanyl-butanoic acid (reacted)" PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VEF "Create component" 2023-03-03 PDBE VEF "Modify leaving atom flag" 2023-03-08 PDBE VEF "Initial release" 2023-07-19 RCSB VEF "Modify backbone" 2023-11-03 PDBE #