data_VEM # _chem_comp.id VEM _chem_comp.name "N-(4-tert-butylphenyl)-N-[(1R)-2-[(2-methoxyethyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H31 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.511 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RL2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VEM N1 N1 N 0 1 N N N N N N 7.898 1.570 22.985 -1.490 -1.530 -0.844 N1 VEM 1 VEM C4 C1 C 0 1 N N N N N N 8.070 0.956 21.819 -1.306 -0.478 -1.666 C4 VEM 2 VEM C5 C2 C 0 1 N N N N N N 8.642 2.768 23.329 -1.864 -2.834 -1.395 C5 VEM 3 VEM C6 C3 C 0 1 N N N N N N 8.025 3.958 22.665 -2.003 -3.848 -0.258 C6 VEM 4 VEM C7 C4 C 0 1 N N N N N N 8.411 6.186 22.266 -3.307 -4.356 1.688 C7 VEM 5 VEM C8 C5 C 0 1 Y N N N N N 6.352 0.202 20.122 -2.168 1.648 -0.774 C8 VEM 6 VEM C10 C6 C 0 1 Y N N N N N 5.462 1.088 17.698 -4.369 3.125 -0.166 C10 VEM 7 VEM C13 C7 C 0 1 Y N N N N N 8.718 -1.669 22.433 1.251 0.496 0.039 C13 VEM 8 VEM C15 C8 C 0 1 Y N N N N N 11.121 -1.775 22.392 3.172 -0.358 -1.115 C15 VEM 9 VEM C17 C9 C 0 1 Y N N N N N 9.964 -1.948 24.476 3.444 0.822 0.954 C17 VEM 10 VEM C20 C10 C 0 1 N N N N N N 13.707 -1.981 23.588 6.014 0.593 -1.478 C20 VEM 11 VEM C21 C11 C 0 1 N N N N N N 12.613 -3.107 25.502 5.796 -1.556 -0.223 C21 VEM 12 VEM C22 C12 C 0 1 N N N N N N 12.632 -0.616 25.332 6.150 0.584 1.017 C22 VEM 13 VEM O1 O1 O 0 1 N N N N N N 8.975 1.236 21.035 -1.450 -0.612 -2.863 O1 VEM 14 VEM O2 O2 O 0 1 N N N N N N 9.004 4.946 22.529 -3.091 -3.470 0.588 O2 VEM 15 VEM C3 C13 C 0 1 N N R N N N 7.010 -0.096 21.458 -0.922 0.864 -1.099 C3 VEM 16 VEM C12 C14 C 0 1 Y N N N N N 5.233 1.019 20.056 -3.421 1.078 -0.947 C12 VEM 17 VEM C11 C15 C 0 1 Y N N N N N 4.776 1.473 18.835 -4.539 1.836 -0.636 C11 VEM 18 VEM N2 N2 N 0 1 Y N N N N N 6.534 0.290 17.721 -3.162 3.632 -0.008 N2 VEM 19 VEM C9 C16 C 0 1 Y N N N N N 6.945 -0.147 18.916 -2.076 2.940 -0.294 C9 VEM 20 VEM N N3 N 0 1 N N N N N N 7.467 -1.476 21.754 -0.135 0.671 0.121 N VEM 21 VEM C2 C17 C 0 1 N N N N N N 6.654 -2.525 21.434 -0.745 0.662 1.323 C2 VEM 22 VEM O O3 O 0 1 N N N N N N 5.491 -2.357 21.104 -1.956 0.684 1.388 O VEM 23 VEM C1 C18 C 0 1 N N N N N N 7.247 -3.906 21.429 0.077 0.626 2.585 C1 VEM 24 VEM C C19 C 0 1 N N N N N N 7.131 -4.521 20.071 -0.776 0.087 3.734 C VEM 25 VEM C18 C20 C 0 1 Y N N N N N 8.751 -1.818 23.820 2.076 0.996 1.038 C18 VEM 26 VEM C16 C21 C 0 1 Y N N N N N 11.169 -1.908 23.779 3.991 0.141 -0.118 C16 VEM 27 VEM C19 C22 C 0 1 N N N N N N 12.507 -1.912 24.534 5.482 -0.059 -0.200 C19 VEM 28 VEM C14 C23 C 0 1 Y N N N N N 9.915 -1.664 21.723 1.804 -0.182 -1.039 C14 VEM 29 VEM H1 H1 H 0 1 N N N N N N 7.241 1.198 23.641 -1.372 -1.423 0.113 H1 VEM 30 VEM H2 H2 H 0 1 N N N N N N 9.683 2.661 22.991 -2.814 -2.748 -1.922 H2 VEM 31 VEM H3 H3 H 0 1 N N N N N N 8.623 2.908 24.420 -1.093 -3.170 -2.089 H3 VEM 32 VEM H4 H4 H 0 1 N N N N N N 7.197 4.339 23.281 -2.193 -4.838 -0.674 H4 VEM 33 VEM H5 H5 H 0 1 N N N N N N 7.644 3.674 21.673 -1.081 -3.870 0.324 H5 VEM 34 VEM H6 H6 H 0 1 N N N N N N 9.193 6.952 22.162 -4.149 -3.999 2.281 H6 VEM 35 VEM H7 H7 H 0 1 N N N N N N 7.831 6.125 21.333 -3.524 -5.355 1.312 H7 VEM 36 VEM H8 H8 H 0 1 N N N N N N 7.742 6.456 23.096 -2.412 -4.388 2.310 H8 VEM 37 VEM H9 H9 H 0 1 N N N N N N 5.114 1.451 16.742 -5.235 3.722 0.080 H9 VEM 38 VEM H10 H10 H 0 1 N N N N N N 12.043 -1.758 21.829 3.602 -0.890 -1.950 H10 VEM 39 VEM H11 H11 H 0 1 N N N N N N 9.976 -2.083 25.547 4.086 1.211 1.730 H11 VEM 40 VEM H12 H12 H 0 1 N N N N N N 14.638 -1.981 24.175 5.791 1.660 -1.462 H12 VEM 41 VEM H13 H13 H 0 1 N N N N N N 13.650 -2.903 22.990 7.093 0.449 -1.537 H13 VEM 42 VEM H14 H14 H 0 1 N N N N N N 13.696 -1.109 22.918 5.538 0.135 -2.345 H14 VEM 43 VEM H15 H15 H 0 1 N N N N N N 11.763 -3.090 26.200 6.875 -1.700 -0.282 H15 VEM 44 VEM H16 H16 H 0 1 N N N N N N 12.598 -4.046 24.929 5.417 -2.020 0.688 H16 VEM 45 VEM H17 H17 H 0 1 N N N N N N 13.554 -3.038 26.068 5.320 -2.014 -1.090 H17 VEM 46 VEM H18 H18 H 0 1 N N N N N N 11.784 -0.529 26.027 5.927 1.651 1.033 H18 VEM 47 VEM H19 H19 H 0 1 N N N N N N 13.573 -0.626 25.902 5.771 0.120 1.927 H19 VEM 48 VEM H20 H20 H 0 1 N N N N N N 12.630 0.241 24.642 7.229 0.440 0.957 H20 VEM 49 VEM H21 H21 H 0 1 N N N N N N 6.209 0.083 22.190 -0.329 1.412 -1.832 H21 VEM 50 VEM H22 H22 H 0 1 N N N N N N 4.718 1.301 20.962 -3.523 0.068 -1.317 H22 VEM 51 VEM H23 H23 H 0 1 N N N N N N 3.907 2.111 18.770 -5.530 1.425 -0.758 H23 VEM 52 VEM H24 H24 H 0 1 N N N N N N 7.793 -0.815 18.945 -1.105 3.389 -0.152 H24 VEM 53 VEM H25 H25 H 0 1 N N N N N N 6.711 -4.533 22.157 0.940 -0.024 2.438 H25 VEM 54 VEM H26 H26 H 0 1 N N N N N N 8.309 -3.845 21.709 0.418 1.633 2.826 H26 VEM 55 VEM H27 H27 H 0 1 N N N N N N 7.569 -5.530 20.086 -1.639 0.736 3.882 H27 VEM 56 VEM H28 H28 H 0 1 N N N N N N 6.070 -4.587 19.788 -1.117 -0.920 3.493 H28 VEM 57 VEM H29 H29 H 0 1 N N N N N N 7.668 -3.899 19.340 -0.182 0.060 4.648 H29 VEM 58 VEM H30 H30 H 0 1 N N N N N N 7.829 -1.832 24.383 1.649 1.521 1.880 H30 VEM 59 VEM H31 H31 H 0 1 N N N N N N 9.902 -1.573 20.647 1.165 -0.572 -1.818 H31 VEM 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VEM C10 N2 DOUB Y N 1 VEM C10 C11 SING Y N 2 VEM N2 C9 SING Y N 3 VEM C11 C12 DOUB Y N 4 VEM C9 C8 DOUB Y N 5 VEM C12 C8 SING Y N 6 VEM C C1 SING N N 7 VEM C8 C3 SING N N 8 VEM O1 C4 DOUB N N 9 VEM O C2 DOUB N N 10 VEM C1 C2 SING N N 11 VEM C2 N SING N N 12 VEM C3 N SING N N 13 VEM C3 C4 SING N N 14 VEM C14 C15 DOUB Y N 15 VEM C14 C13 SING Y N 16 VEM N C13 SING N N 17 VEM C4 N1 SING N N 18 VEM C7 O2 SING N N 19 VEM C15 C16 SING Y N 20 VEM C13 C18 DOUB Y N 21 VEM O2 C6 SING N N 22 VEM C6 C5 SING N N 23 VEM N1 C5 SING N N 24 VEM C20 C19 SING N N 25 VEM C16 C17 DOUB Y N 26 VEM C16 C19 SING N N 27 VEM C18 C17 SING Y N 28 VEM C19 C22 SING N N 29 VEM C19 C21 SING N N 30 VEM N1 H1 SING N N 31 VEM C5 H2 SING N N 32 VEM C5 H3 SING N N 33 VEM C6 H4 SING N N 34 VEM C6 H5 SING N N 35 VEM C7 H6 SING N N 36 VEM C7 H7 SING N N 37 VEM C7 H8 SING N N 38 VEM C10 H9 SING N N 39 VEM C15 H10 SING N N 40 VEM C17 H11 SING N N 41 VEM C20 H12 SING N N 42 VEM C20 H13 SING N N 43 VEM C20 H14 SING N N 44 VEM C21 H15 SING N N 45 VEM C21 H16 SING N N 46 VEM C21 H17 SING N N 47 VEM C22 H18 SING N N 48 VEM C22 H19 SING N N 49 VEM C22 H20 SING N N 50 VEM C3 H21 SING N N 51 VEM C12 H22 SING N N 52 VEM C11 H23 SING N N 53 VEM C9 H24 SING N N 54 VEM C1 H25 SING N N 55 VEM C1 H26 SING N N 56 VEM C H27 SING N N 57 VEM C H28 SING N N 58 VEM C H29 SING N N 59 VEM C18 H30 SING N N 60 VEM C14 H31 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VEM SMILES ACDLabs 12.01 "N(CCOC)C(=O)C(c1cccnc1)N(c2ccc(cc2)C(C)(C)C)C(=O)CC" VEM InChI InChI 1.03 "InChI=1S/C23H31N3O3/c1-6-20(27)26(19-11-9-18(10-12-19)23(2,3)4)21(17-8-7-13-24-16-17)22(28)25-14-15-29-5/h7-13,16,21H,6,14-15H2,1-5H3,(H,25,28)/t21-/m1/s1" VEM InChIKey InChI 1.03 VGALAKWGAVFSCK-OAQYLSRUSA-N VEM SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N([C@@H](C(=O)NCCOC)c1cccnc1)c2ccc(cc2)C(C)(C)C" VEM SMILES CACTVS 3.385 "CCC(=O)N([CH](C(=O)NCCOC)c1cccnc1)c2ccc(cc2)C(C)(C)C" VEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)[C@H](c2cccnc2)C(=O)NCCOC" VEM SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)C(c2cccnc2)C(=O)NCCOC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VEM "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-tert-butylphenyl)-N-[(1R)-2-[(2-methoxyethyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" VEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{R})-2-(2-methoxyethylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VEM "Create component" 2020-08-05 RCSB VEM "Initial release" 2020-12-02 RCSB VEM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VEM _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #