data_VEP # _chem_comp.id VEP _chem_comp.name "N-(4-tert-butylphenyl)-N-[(1R)-2-[(oxan-4-yl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.548 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VEP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RL3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VEP N1 N1 N 0 1 N N N N N N 8.013 2.038 22.610 -1.618 -1.005 -0.096 N1 VEP 1 VEP C4 C1 C 0 1 N N N N N N 8.255 1.128 21.664 -1.307 -0.292 -1.196 C4 VEP 2 VEP C5 C2 C 0 1 N N N N N N 8.925 3.150 22.862 -2.298 -2.296 -0.227 C5 VEP 3 VEP C6 C3 C 0 1 N N N N N N 8.178 4.476 22.920 -1.988 -3.165 0.995 C6 VEP 4 VEP C7 C4 C 0 1 N N N N N N 9.173 5.578 23.203 -2.764 -4.480 0.887 C7 VEP 5 VEP C8 C5 C 0 1 N N N N N N 10.646 4.101 24.349 -4.517 -3.430 -0.369 C8 VEP 6 VEP C10 C6 C 0 1 Y N N N N N 6.453 0.280 20.105 -1.633 2.129 -0.891 C10 VEP 7 VEP C13 C7 C 0 1 Y N N N N N 4.803 1.436 18.801 -3.894 2.862 -0.721 C13 VEP 8 VEP C15 C8 C 0 1 Y N N N N N 8.804 -1.486 22.479 1.586 0.542 -0.014 C15 VEP 9 VEP C17 C9 C 0 1 Y N N N N N 11.189 -1.827 22.484 3.176 -0.942 -1.023 C17 VEP 10 VEP C20 C10 C 0 1 Y N N N N N 8.829 -1.412 23.870 2.599 1.104 0.751 C20 VEP 11 VEP C21 C11 C 0 1 N N N N N N 12.549 -1.809 24.655 5.597 -0.885 -0.390 C21 VEP 12 VEP C22 C12 C 0 1 N N N N N N 12.680 -0.583 25.560 5.642 -2.371 -0.027 C22 VEP 13 VEP C24 C13 C 0 1 N N N N N N 12.612 -3.070 25.537 6.075 -0.697 -1.831 C24 VEP 14 VEP O1 O1 O 0 1 N N N N N N 9.244 1.169 20.943 -1.590 -0.719 -2.295 O1 VEP 15 VEP C9 C14 C 0 1 N N N N N N 9.734 2.915 24.132 -3.811 -2.073 -0.311 C9 VEP 16 VEP O2 O2 O 0 1 N N N N N N 9.902 5.331 24.421 -4.161 -4.200 0.781 O2 VEP 17 VEP C3 C15 C 0 1 N N R N N N 7.164 0.069 21.432 -0.609 1.037 -1.061 C3 VEP 18 VEP C14 C16 C 0 1 Y N N N N N 5.314 1.070 20.030 -2.987 1.826 -0.880 C14 VEP 19 VEP C12 C17 C 0 1 Y N N N N N 5.452 0.992 17.665 -3.422 4.154 -0.581 C12 VEP 20 VEP N2 N2 N 0 1 Y N N N N N 6.545 0.222 17.697 -2.127 4.404 -0.590 N2 VEP 21 VEP C11 C18 C 0 1 Y N N N N N 7.012 -0.128 18.901 -1.236 3.443 -0.739 C11 VEP 22 VEP N N3 N 0 1 N N N N N N 7.567 -1.323 21.769 0.272 1.008 0.110 N VEP 23 VEP C2 C19 C 0 1 N N N N N N 6.751 -2.385 21.502 -0.183 1.431 1.306 C2 VEP 24 VEP O O3 O 0 1 N N N N N N 5.558 -2.240 21.302 -1.356 1.703 1.447 O VEP 25 VEP C1 C20 C 0 1 N N N N N N 7.369 -3.751 21.401 0.767 1.565 2.469 C1 VEP 26 VEP C C21 C 0 1 N N N N N N 7.121 -4.353 20.029 -0.023 1.531 3.779 C VEP 27 VEP C19 C22 C 0 1 Y N N N N N 10.027 -1.539 24.553 3.894 0.642 0.626 C19 VEP 28 VEP C18 C23 C 0 1 Y N N N N N 11.227 -1.738 23.875 4.183 -0.380 -0.260 C18 VEP 29 VEP C23 C24 C 0 1 N N N N N N 13.766 -1.833 23.732 6.508 -0.101 0.557 C23 VEP 30 VEP C16 C25 C 0 1 Y N N N N N 9.997 -1.704 21.789 1.880 -0.480 -0.907 C16 VEP 31 VEP H1 H1 H 0 1 N N N N N N 7.183 1.956 23.162 -1.389 -0.665 0.784 H1 VEP 32 VEP H2 H2 H 0 1 N N N N N N 9.636 3.208 22.025 -1.952 -2.800 -1.130 H2 VEP 33 VEP H3 H3 H 0 1 N N N N N N 7.681 4.664 21.957 -0.919 -3.375 1.031 H3 VEP 34 VEP H4 H4 H 0 1 N N N N N N 7.425 4.442 23.721 -2.287 -2.639 1.902 H4 VEP 35 VEP H5 H5 H 0 1 N N N N N N 9.885 5.640 22.367 -2.435 -5.025 0.002 H5 VEP 36 VEP H6 H6 H 0 1 N N N N N N 8.633 6.532 23.297 -2.580 -5.085 1.775 H6 VEP 37 VEP H7 H7 H 0 1 N N N N N N 11.197 3.961 25.291 -5.596 -3.278 -0.385 H7 VEP 38 VEP H8 H8 H 0 1 N N N N N N 11.358 4.162 23.513 -4.210 -3.961 -1.270 H8 VEP 39 VEP H9 H9 H 0 1 N N N N N N 3.919 2.053 18.729 -4.955 2.663 -0.708 H9 VEP 40 VEP H10 H10 H 0 1 N N N N N N 12.106 -1.995 21.938 3.405 -1.739 -1.715 H10 VEP 41 VEP H11 H11 H 0 1 N N N N N N 7.911 -1.255 24.417 2.374 1.903 1.443 H11 VEP 42 VEP H12 H12 H 0 1 N N N N N N 11.817 -0.535 26.240 6.665 -2.737 -0.121 H12 VEP 43 VEP H13 H13 H 0 1 N N N N N N 13.606 -0.659 26.148 5.301 -2.505 1.000 H13 VEP 44 VEP H14 H14 H 0 1 N N N N N N 12.711 0.327 24.942 4.993 -2.930 -0.701 H14 VEP 45 VEP H15 H15 H 0 1 N N N N N N 11.748 -3.086 26.217 5.426 -1.256 -2.505 H15 VEP 46 VEP H16 H16 H 0 1 N N N N N N 12.593 -3.965 24.898 6.043 0.361 -2.089 H16 VEP 47 VEP H17 H17 H 0 1 N N N N N N 13.541 -3.060 26.126 7.098 -1.063 -1.924 H17 VEP 48 VEP H18 H18 H 0 1 N N N N N N 9.054 2.808 24.990 -4.147 -1.525 0.569 H18 VEP 49 VEP H19 H19 H 0 1 N N N N N N 10.335 2.000 24.025 -4.046 -1.501 -1.209 H19 VEP 50 VEP H20 H20 H 0 1 N N N N N N 6.399 0.316 22.182 -0.017 1.229 -1.956 H20 VEP 51 VEP H21 H21 H 0 1 N N N N N N 4.826 1.399 20.936 -3.326 0.807 -0.993 H21 VEP 52 VEP H22 H22 H 0 1 N N N N N N 5.057 1.281 16.703 -4.122 4.967 -0.456 H22 VEP 53 VEP H23 H23 H 0 1 N N N N N N 7.880 -0.769 18.939 -0.184 3.687 -0.743 H23 VEP 54 VEP H24 H24 H 0 1 N N N N N N 6.927 -4.405 22.167 1.479 0.740 2.453 H24 VEP 55 VEP H25 H25 H 0 1 N N N N N N 8.453 -3.670 21.569 1.304 2.510 2.392 H25 VEP 56 VEP H26 H26 H 0 1 N N N N N N 7.581 -5.351 19.977 0.663 1.628 4.620 H26 VEP 57 VEP H27 H27 H 0 1 N N N N N N 6.038 -4.439 19.857 -0.736 2.356 3.794 H27 VEP 58 VEP H28 H28 H 0 1 N N N N N N 7.564 -3.705 19.259 -0.561 0.586 3.855 H28 VEP 59 VEP H29 H29 H 0 1 N N N N N N 10.031 -1.483 25.632 4.683 1.079 1.221 H29 VEP 60 VEP H30 H30 H 0 1 N N N N N N 14.684 -1.884 24.336 6.475 0.957 0.298 H30 VEP 61 VEP H31 H31 H 0 1 N N N N N N 13.710 -2.713 23.075 6.167 -0.235 1.583 H31 VEP 62 VEP H32 H32 H 0 1 N N N N N N 13.780 -0.919 23.120 7.530 -0.467 0.463 H32 VEP 63 VEP H33 H33 H 0 1 N N N N N N 9.991 -1.777 20.711 1.094 -0.920 -1.503 H33 VEP 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VEP C12 N2 DOUB Y N 1 VEP C12 C13 SING Y N 2 VEP N2 C11 SING Y N 3 VEP C13 C14 DOUB Y N 4 VEP C11 C10 DOUB Y N 5 VEP C C1 SING N N 6 VEP C14 C10 SING Y N 7 VEP C10 C3 SING N N 8 VEP O1 C4 DOUB N N 9 VEP O C2 DOUB N N 10 VEP C1 C2 SING N N 11 VEP C3 C4 SING N N 12 VEP C3 N SING N N 13 VEP C2 N SING N N 14 VEP C4 N1 SING N N 15 VEP N C15 SING N N 16 VEP C16 C15 DOUB Y N 17 VEP C16 C17 SING Y N 18 VEP C15 C20 SING Y N 19 VEP C17 C18 DOUB Y N 20 VEP N1 C5 SING N N 21 VEP C5 C6 SING N N 22 VEP C5 C9 SING N N 23 VEP C6 C7 SING N N 24 VEP C7 O2 SING N N 25 VEP C23 C21 SING N N 26 VEP C20 C19 DOUB Y N 27 VEP C18 C19 SING Y N 28 VEP C18 C21 SING N N 29 VEP C9 C8 SING N N 30 VEP C8 O2 SING N N 31 VEP C21 C24 SING N N 32 VEP C21 C22 SING N N 33 VEP N1 H1 SING N N 34 VEP C5 H2 SING N N 35 VEP C6 H3 SING N N 36 VEP C6 H4 SING N N 37 VEP C7 H5 SING N N 38 VEP C7 H6 SING N N 39 VEP C8 H7 SING N N 40 VEP C8 H8 SING N N 41 VEP C13 H9 SING N N 42 VEP C17 H10 SING N N 43 VEP C20 H11 SING N N 44 VEP C22 H12 SING N N 45 VEP C22 H13 SING N N 46 VEP C22 H14 SING N N 47 VEP C24 H15 SING N N 48 VEP C24 H16 SING N N 49 VEP C24 H17 SING N N 50 VEP C9 H18 SING N N 51 VEP C9 H19 SING N N 52 VEP C3 H20 SING N N 53 VEP C14 H21 SING N N 54 VEP C12 H22 SING N N 55 VEP C11 H23 SING N N 56 VEP C1 H24 SING N N 57 VEP C1 H25 SING N N 58 VEP C H26 SING N N 59 VEP C H27 SING N N 60 VEP C H28 SING N N 61 VEP C19 H29 SING N N 62 VEP C23 H30 SING N N 63 VEP C23 H31 SING N N 64 VEP C23 H32 SING N N 65 VEP C16 H33 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VEP SMILES ACDLabs 12.01 "N(C1CCOCC1)C(=O)C(c2cccnc2)N(c3ccc(cc3)C(C)(C)C)C(=O)CC" VEP InChI InChI 1.03 "InChI=1S/C25H33N3O3/c1-5-22(29)28(21-10-8-19(9-11-21)25(2,3)4)23(18-7-6-14-26-17-18)24(30)27-20-12-15-31-16-13-20/h6-11,14,17,20,23H,5,12-13,15-16H2,1-4H3,(H,27,30)/t23-/m1/s1" VEP InChIKey InChI 1.03 RRENCBKXJJGAMC-HSZRJFAPSA-N VEP SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N([C@@H](C(=O)NC1CCOCC1)c2cccnc2)c3ccc(cc3)C(C)(C)C" VEP SMILES CACTVS 3.385 "CCC(=O)N([CH](C(=O)NC1CCOCC1)c2cccnc2)c3ccc(cc3)C(C)(C)C" VEP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)[C@H](c2cccnc2)C(=O)NC3CCOCC3" VEP SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)C(c2cccnc2)C(=O)NC3CCOCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VEP "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-tert-butylphenyl)-N-[(1R)-2-[(oxan-4-yl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" VEP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{R})-2-(oxan-4-ylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VEP "Create component" 2020-08-05 RCSB VEP "Initial release" 2020-12-02 RCSB VEP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VEP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #