data_VF0 # _chem_comp.id VF0 _chem_comp.name "(2R)-2-azanyl-3-[oxidanyl-[(2R)-2-oxidanyl-3-tetradec-9-enoyloxy-propoxy]phosphoryl]oxy-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H38 N O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-21 _chem_comp.pdbx_modified_date 2023-10-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VF0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K4N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VF0 C10 C1 C 0 1 N N N 163.036 147.921 138.376 -10.887 -1.232 0.590 C10 VF0 1 VF0 C13 C2 C 0 1 N N N 165.584 147.891 135.603 -7.122 -1.528 -0.038 C13 VF0 2 VF0 C15 C3 C 0 1 N N N 165.522 147.462 133.127 -4.643 -1.235 -0.147 C15 VF0 3 VF0 C17 C4 C 0 1 N N N 163.827 146.758 131.430 -2.164 -0.943 -0.256 C17 VF0 4 VF0 C21 C5 C 0 1 N N N 166.499 146.536 129.753 1.306 0.495 0.231 C21 VF0 5 VF0 C22 C6 C 0 1 N N R 168.009 146.748 129.743 2.651 -0.042 -0.262 C22 VF0 6 VF0 C24 C7 C 0 1 N N N 168.546 146.548 128.333 3.781 0.827 0.296 C24 VF0 7 VF0 C05 C8 C 0 1 N N N 158.626 146.438 140.354 -15.090 2.787 -0.735 C05 VF0 8 VF0 C06 C9 C 0 1 N N N 159.547 147.379 139.580 -14.775 1.503 0.036 C06 VF0 9 VF0 C07 C10 C 0 1 N N N 160.653 147.882 140.504 -13.471 0.900 -0.490 C07 VF0 10 VF0 C08 C11 C 0 1 N N N 161.370 149.068 139.862 -13.156 -0.384 0.281 C08 VF0 11 VF0 C09 C12 C 0 1 N N N 162.847 148.747 139.644 -11.872 -0.978 -0.236 C09 VF0 12 VF0 C11 C13 C 0 1 N N N 164.127 148.550 137.522 -9.601 -1.820 0.072 C11 VF0 13 VF0 C12 C14 C 0 1 N N N 164.170 147.852 136.168 -8.428 -0.930 0.489 C12 VF0 14 VF0 C14 C15 C 0 1 N N N 165.739 146.843 134.506 -5.949 -0.638 0.379 C14 VF0 15 VF0 C16 C16 C 0 1 N N N 164.037 147.478 132.759 -3.470 -0.345 0.270 C16 VF0 16 VF0 C18 C17 C 0 1 N N N 164.472 147.564 130.303 -1.009 -0.066 0.154 C18 VF0 17 VF0 C30 C18 C 0 1 N N N 169.155 149.424 125.078 9.021 0.196 0.208 C30 VF0 18 VF0 C31 C19 C 0 1 N N R 167.810 149.540 124.368 9.894 -0.914 -0.382 C31 VF0 19 VF0 C33 C20 C 0 1 N N N 166.734 148.841 125.192 11.322 -0.717 0.058 C33 VF0 20 VF0 N32 N1 N 0 1 N N N 167.888 148.918 123.061 9.822 -0.865 -1.849 N32 VF0 21 VF0 O19 O1 O 0 1 N N N 163.793 148.094 129.492 -1.210 0.934 0.801 O19 VF0 22 VF0 O20 O2 O 0 1 N N N 165.863 147.685 130.226 0.243 -0.396 -0.199 O20 VF0 23 VF0 O23 O3 O 0 1 N N N 168.622 145.824 130.593 2.684 -0.007 -1.690 O23 VF0 24 VF0 O25 O4 O 0 1 N N N 169.830 147.088 128.247 5.042 0.259 -0.068 O25 VF0 25 VF0 O27 O5 O 0 1 N N N 170.785 146.991 125.866 6.497 1.087 1.821 O27 VF0 26 VF0 O28 O6 O 0 1 N N N 171.402 148.760 127.118 6.612 2.347 -0.363 O28 VF0 27 VF0 O29 O7 O 0 1 N N N 168.986 148.768 126.298 7.651 -0.055 -0.111 O29 VF0 28 VF0 O34 O8 O 0 1 N N N 166.600 147.592 125.122 12.120 -0.205 -0.692 O34 VF0 29 VF0 O35 O9 O 0 1 N N N 165.982 149.517 125.940 11.708 -1.111 1.281 O35 VF0 30 VF0 P26 P1 P 0 1 N N N 170.253 147.898 126.878 6.451 0.913 0.352 P26 VF0 31 VF0 H101 H1 H 0 0 N N N 162.482 147.029 138.124 -10.997 -1.015 1.643 H101 VF0 32 VF0 H132 H3 H 0 0 N N N 166.304 147.684 136.409 -6.986 -2.526 0.378 H132 VF0 33 VF0 H131 H4 H 0 0 N N N 165.781 148.889 135.184 -7.162 -1.589 -1.125 H131 VF0 34 VF0 H152 H5 H 0 0 N N N 166.072 146.873 132.378 -4.507 -2.234 0.269 H152 VF0 35 VF0 H151 H6 H 0 0 N N N 165.902 148.494 133.133 -4.684 -1.297 -1.235 H151 VF0 36 VF0 H171 H7 H 0 0 N N N 162.749 146.655 131.236 -2.028 -1.941 0.159 H171 VF0 37 VF0 H172 H8 H 0 0 N N N 164.288 145.760 131.477 -2.205 -1.004 -1.344 H172 VF0 38 VF0 H212 H9 H 0 0 N N N 166.154 146.322 128.731 1.314 0.552 1.320 H212 VF0 39 VF0 H211 H10 H 0 0 N N N 166.254 145.687 130.408 1.137 1.489 -0.183 H211 VF0 40 VF0 H221 H11 H 0 0 N N N 168.227 147.777 130.065 2.780 -1.069 0.080 H221 VF0 41 VF0 H241 H12 H 0 0 N N N 167.886 147.054 127.613 3.704 1.833 -0.117 H241 VF0 42 VF0 H242 H13 H 0 0 N N N 168.583 145.473 128.103 3.703 0.872 1.382 H242 VF0 43 VF0 H051 H14 H 0 0 N N N 157.829 146.075 139.689 -14.278 3.501 -0.599 H051 VF0 44 VF0 H052 H15 H 0 0 N N N 159.207 145.583 140.730 -15.197 2.557 -1.795 H052 VF0 45 VF0 H1 H16 H 0 1 N N N 158.179 146.978 141.202 -16.019 3.217 -0.361 H1 VF0 46 VF0 H062 H17 H 0 0 N N N 159.994 146.839 138.732 -14.668 1.733 1.096 H062 VF0 47 VF0 H061 H18 H 0 0 N N N 158.966 148.234 139.204 -15.587 0.789 -0.101 H061 VF0 48 VF0 H071 H19 H 0 0 N N N 160.213 148.197 141.461 -13.578 0.670 -1.550 H071 VF0 49 VF0 H072 H20 H 0 0 N N N 161.376 147.072 140.682 -12.659 1.614 -0.353 H072 VF0 50 VF0 H081 H21 H 0 0 N N N 161.284 149.944 140.522 -13.049 -0.154 1.341 H081 VF0 51 VF0 H082 H22 H 0 0 N N N 160.902 149.292 138.892 -13.968 -1.098 0.145 H082 VF0 52 VF0 H091 H24 H 0 0 N N N 163.647 149.061 140.298 -11.762 -1.195 -1.289 H091 VF0 53 VF0 H112 H25 H 0 0 N N N 165.099 148.437 138.025 -9.465 -2.819 0.487 H112 VF0 54 VF0 H111 H26 H 0 0 N N N 163.911 149.619 137.378 -9.641 -1.882 -1.016 H111 VF0 55 VF0 H122 H27 H 0 0 N N N 163.487 148.363 135.474 -8.387 -0.869 1.576 H122 VF0 56 VF0 H121 H28 H 0 0 N N N 163.855 146.805 136.288 -8.564 0.068 0.073 H121 VF0 57 VF0 H141 H29 H 0 0 N N N 164.999 146.045 134.663 -6.085 0.361 -0.036 H141 VF0 58 VF0 H142 H30 H 0 0 N N N 166.752 146.418 134.555 -5.909 -0.576 1.467 H142 VF0 59 VF0 H161 H31 H 0 0 N N N 163.694 148.519 132.669 -3.607 0.653 -0.146 H161 VF0 60 VF0 H162 H32 H 0 0 N N N 163.460 146.969 133.545 -3.430 -0.283 1.357 H162 VF0 61 VF0 H301 H33 H 0 0 N N N 169.853 148.852 124.449 9.144 0.217 1.291 H301 VF0 62 VF0 H302 H34 H 0 0 N N N 169.562 150.430 125.257 9.322 1.156 -0.210 H302 VF0 63 VF0 H311 H35 H 0 0 N N N 167.549 150.604 124.265 9.536 -1.882 -0.032 H311 VF0 64 VF0 H2 H36 H 0 1 N N N 167.004 148.997 122.600 8.886 -1.059 -2.171 H2 VF0 65 VF0 H321 H37 H 0 0 N N N 168.590 149.376 122.515 10.149 0.023 -2.197 H321 VF0 66 VF0 H231 H39 H 0 0 N N N 168.294 145.940 131.477 2.575 0.878 -2.064 H231 VF0 67 VF0 H3 H40 H 0 1 N N N 172.125 148.485 126.566 6.592 2.309 -1.329 H3 VF0 68 VF0 H4 H41 H 0 1 N N N 165.370 148.939 126.381 12.634 -0.964 1.518 H4 VF0 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VF0 N32 C31 SING N N 1 VF0 C31 C30 SING N N 2 VF0 C31 C33 SING N N 3 VF0 C30 O29 SING N N 4 VF0 O34 C33 DOUB N N 5 VF0 C33 O35 SING N N 6 VF0 O27 P26 DOUB N N 7 VF0 O29 P26 SING N N 8 VF0 P26 O28 SING N N 9 VF0 P26 O25 SING N N 10 VF0 O25 C24 SING N N 11 VF0 C24 C22 SING N N 12 VF0 O19 C18 DOUB N N 13 VF0 C22 C21 SING N N 14 VF0 C22 O23 SING N N 15 VF0 C21 O20 SING N N 16 VF0 O20 C18 SING N N 17 VF0 C18 C17 SING N N 18 VF0 C17 C16 SING N N 19 VF0 C16 C15 SING N N 20 VF0 C15 C14 SING N N 21 VF0 C14 C13 SING N N 22 VF0 C13 C12 SING N N 23 VF0 C12 C11 SING N N 24 VF0 C11 C10 SING N N 25 VF0 C10 C09 DOUB N Z 26 VF0 C06 C05 SING N N 27 VF0 C06 C07 SING N N 28 VF0 C09 C08 SING N N 29 VF0 C08 C07 SING N N 30 VF0 C10 H101 SING N N 31 VF0 C13 H132 SING N N 32 VF0 C13 H131 SING N N 33 VF0 C15 H152 SING N N 34 VF0 C15 H151 SING N N 35 VF0 C17 H171 SING N N 36 VF0 C17 H172 SING N N 37 VF0 C21 H212 SING N N 38 VF0 C21 H211 SING N N 39 VF0 C22 H221 SING N N 40 VF0 C24 H241 SING N N 41 VF0 C24 H242 SING N N 42 VF0 C05 H051 SING N N 43 VF0 C05 H052 SING N N 44 VF0 C05 H1 SING N N 45 VF0 C06 H062 SING N N 46 VF0 C06 H061 SING N N 47 VF0 C07 H071 SING N N 48 VF0 C07 H072 SING N N 49 VF0 C08 H081 SING N N 50 VF0 C08 H082 SING N N 51 VF0 C09 H091 SING N N 52 VF0 C11 H112 SING N N 53 VF0 C11 H111 SING N N 54 VF0 C12 H122 SING N N 55 VF0 C12 H121 SING N N 56 VF0 C14 H141 SING N N 57 VF0 C14 H142 SING N N 58 VF0 C16 H161 SING N N 59 VF0 C16 H162 SING N N 60 VF0 C30 H301 SING N N 61 VF0 C30 H302 SING N N 62 VF0 C31 H311 SING N N 63 VF0 N32 H2 SING N N 64 VF0 N32 H321 SING N N 65 VF0 O23 H231 SING N N 66 VF0 O28 H3 SING N N 67 VF0 O35 H4 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VF0 InChI InChI 1.06 "InChI=1S/C20H38NO9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-19(23)28-14-17(22)15-29-31(26,27)30-16-18(21)20(24)25/h5-6,17-18,22H,2-4,7-16,21H2,1H3,(H,24,25)(H,26,27)/t17-,18-/m1/s1" VF0 InChIKey InChI 1.06 NPKANCOBLRPFQN-QZTJIDSGSA-N VF0 SMILES_CANONICAL CACTVS 3.385 "CCCC\C=C/CCCCCCCC(=O)OC[C@@H](O)CO[P](O)(=O)OC[C@@H](N)C(O)=O" VF0 SMILES CACTVS 3.385 "CCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OC[CH](N)C(O)=O" VF0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC=CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](C(=O)O)N)O" VF0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)O" # _pdbx_chem_comp_identifier.comp_id VF0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-[oxidanyl-[(2~{R})-2-oxidanyl-3-tetradec-9-enoyloxy-propoxy]phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VF0 "Create component" 2023-07-21 PDBJ VF0 "Initial release" 2023-10-25 RCSB #