data_VF6 # _chem_comp.id VF6 _chem_comp.name "~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H21 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.382 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VF6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CQA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VF6 C10 C1 C 0 1 N N N N N N 7.036 9.098 24.120 0.982 4.479 -1.179 C10 VF6 1 VF6 C13 C2 C 0 1 Y N N N N N 10.088 5.837 27.971 -0.245 -0.704 0.203 C13 VF6 2 VF6 C15 C3 C 0 1 Y N N N N N 10.807 7.104 29.870 -2.438 -0.609 -0.770 C15 VF6 3 VF6 C21 C4 C 0 1 Y N N N N N 8.468 6.938 29.385 -2.041 0.335 1.411 C21 VF6 4 VF6 C22 C5 C 0 1 Y N N N N N 8.768 6.135 28.298 -0.717 -0.040 1.335 C22 VF6 5 VF6 C02 C6 C 0 1 Y N N N N N 11.591 3.187 25.967 2.770 -2.735 -0.293 C02 VF6 6 VF6 C04 C7 C 0 1 Y N N N N N 10.434 4.394 24.438 3.514 -0.637 0.318 C04 VF6 7 VF6 C06 C8 C 0 1 Y N N N N N 10.000 5.237 25.458 2.192 -0.204 0.408 C06 VF6 8 VF6 C07 C9 C 0 1 N N N N N N 9.140 6.479 25.196 1.869 1.214 0.802 C07 VF6 9 VF6 C08 C10 C 0 1 N N N N N N 7.846 6.687 25.355 1.665 2.059 -0.458 C08 VF6 10 VF6 C09 C11 C 0 1 N N N N N N 7.409 8.123 25.029 1.337 3.499 -0.059 C09 VF6 11 VF6 C11 C12 C 0 1 N N N N N N 7.157 9.426 25.459 2.331 4.589 -0.465 C11 VF6 12 VF6 C12 C13 C 0 1 Y N N N N N 10.442 4.980 26.757 1.177 -1.114 0.121 C12 VF6 13 VF6 C14 C14 C 0 1 Y N N N N N 11.109 6.317 28.768 -1.115 -0.986 -0.850 C14 VF6 14 VF6 C16 C15 C 0 1 Y N N N N N 9.495 7.402 30.192 -2.906 0.053 0.360 C16 VF6 15 VF6 C18 C16 C 0 1 N N N N N N 8.266 7.988 32.413 -5.203 -0.346 -0.103 C18 VF6 16 VF6 C19 C17 C 0 1 N N N N N N 7.375 6.728 32.458 -6.657 0.012 0.071 C19 VF6 17 VF6 N01 N1 N 0 1 N N N N N N 12.426 2.043 26.264 3.068 -4.037 -0.654 N01 VF6 18 VF6 N03 N2 N 0 1 Y N N N N N 11.206 3.381 24.728 3.761 -1.896 -0.032 N03 VF6 19 VF6 N05 N3 N 0 1 N N N N N N 10.060 4.527 23.038 4.557 0.234 0.590 N05 VF6 20 VF6 N17 N4 N 0 1 N N N N N N 9.230 8.255 31.356 -4.248 0.435 0.439 N17 VF6 21 VF6 N23 N5 N 0 1 Y N N N N N 11.234 3.968 26.955 1.502 -2.361 -0.223 N23 VF6 22 VF6 O20 O1 O 0 1 N N N N N N 8.189 8.806 33.258 -4.894 -1.337 -0.730 O20 VF6 23 VF6 H1 H1 H 0 1 N N N N N N 7.768 9.480 23.393 0.982 4.098 -2.200 H1 VF6 24 VF6 H2 H2 H 0 1 N N N N N N 6.041 9.060 23.652 0.234 5.242 -0.962 H2 VF6 25 VF6 H3 H3 H 0 1 N N N N N N 11.607 7.489 30.485 -3.112 -0.826 -1.585 H3 VF6 26 VF6 H4 H4 H 0 1 N N N N N N 7.443 7.201 29.602 -2.407 0.849 2.288 H4 VF6 27 VF6 H5 H5 H 0 1 N N N N N N 7.967 5.734 27.695 -0.046 0.179 2.152 H5 VF6 28 VF6 H6 H6 H 0 1 N N N N N N 9.313 6.699 24.132 0.957 1.227 1.399 H6 VF6 29 VF6 H7 H7 H 0 1 N N N N N N 9.610 7.259 25.813 2.692 1.626 1.386 H7 VF6 30 VF6 H8 H8 H 0 1 N N N N N N 7.586 6.474 26.402 2.577 2.046 -1.055 H8 VF6 31 VF6 H9 H9 H 0 1 N N N N N N 7.299 5.999 24.694 0.842 1.647 -1.042 H9 VF6 32 VF6 H10 H10 H 0 1 N N N N N N 6.355 7.852 25.191 0.823 3.617 0.895 H10 VF6 33 VF6 H11 H11 H 0 1 N N N N N N 7.987 10.065 25.797 3.219 4.280 -1.017 H11 VF6 34 VF6 H12 H12 H 0 1 N N N N N N 6.259 9.645 26.056 2.471 5.424 0.221 H12 VF6 35 VF6 H13 H13 H 0 1 N N N N N N 12.137 6.081 28.535 -0.752 -1.499 -1.728 H13 VF6 36 VF6 H14 H14 H 0 1 N N N N N N 6.732 6.765 33.349 -7.277 -0.729 -0.433 H14 VF6 37 VF6 H15 H15 H 0 1 N N N N N N 6.748 6.690 31.555 -6.902 0.030 1.133 H15 VF6 38 VF6 H16 H16 H 0 1 N N N N N N 8.010 5.831 32.501 -6.843 0.995 -0.361 H16 VF6 39 VF6 H17 H17 H 0 1 N N N N N N 12.601 1.530 25.423 2.352 -4.662 -0.853 H17 VF6 40 VF6 H18 H18 H 0 1 N N N N N N 13.294 2.355 26.651 3.992 -4.326 -0.710 H18 VF6 41 VF6 H19 H19 H 0 1 N N N N N N 10.476 3.787 22.510 5.475 -0.073 0.525 H19 VF6 42 VF6 H20 H20 H 0 1 N N N N N N 9.065 4.479 22.953 4.370 1.151 0.844 H20 VF6 43 VF6 H21 H21 H 0 1 N N N N N N 9.762 9.099 31.430 -4.491 1.261 0.884 H21 VF6 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VF6 N05 C04 SING N N 1 VF6 C10 C09 SING N N 2 VF6 C10 C11 SING N N 3 VF6 C04 N03 DOUB Y N 4 VF6 C04 C06 SING Y N 5 VF6 N03 C02 SING Y N 6 VF6 C09 C08 SING N N 7 VF6 C09 C11 SING N N 8 VF6 C07 C08 SING N N 9 VF6 C07 C06 SING N N 10 VF6 C06 C12 DOUB Y N 11 VF6 C02 N01 SING N N 12 VF6 C02 N23 DOUB Y N 13 VF6 C12 N23 SING Y N 14 VF6 C12 C13 SING N N 15 VF6 C13 C22 DOUB Y N 16 VF6 C13 C14 SING Y N 17 VF6 C22 C21 SING Y N 18 VF6 C14 C15 DOUB Y N 19 VF6 C21 C16 DOUB Y N 20 VF6 C15 C16 SING Y N 21 VF6 C16 N17 SING N N 22 VF6 N17 C18 SING N N 23 VF6 C18 C19 SING N N 24 VF6 C18 O20 DOUB N N 25 VF6 C10 H1 SING N N 26 VF6 C10 H2 SING N N 27 VF6 C15 H3 SING N N 28 VF6 C21 H4 SING N N 29 VF6 C22 H5 SING N N 30 VF6 C07 H6 SING N N 31 VF6 C07 H7 SING N N 32 VF6 C08 H8 SING N N 33 VF6 C08 H9 SING N N 34 VF6 C09 H10 SING N N 35 VF6 C11 H11 SING N N 36 VF6 C11 H12 SING N N 37 VF6 C14 H13 SING N N 38 VF6 C19 H14 SING N N 39 VF6 C19 H15 SING N N 40 VF6 C19 H16 SING N N 41 VF6 N01 H17 SING N N 42 VF6 N01 H18 SING N N 43 VF6 N05 H19 SING N N 44 VF6 N05 H20 SING N N 45 VF6 N17 H21 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VF6 InChI InChI 1.06 "InChI=1S/C17H21N5O/c1-10(23)20-13-7-5-12(6-8-13)15-14(9-4-11-2-3-11)16(18)22-17(19)21-15/h5-8,11H,2-4,9H2,1H3,(H,20,23)(H4,18,19,21,22)" VF6 InChIKey InChI 1.06 SCRAMBGYZMQUJK-UHFFFAOYSA-N VF6 SMILES_CANONICAL CACTVS 3.385 "CC(=O)Nc1ccc(cc1)c2nc(N)nc(N)c2CCC3CC3" VF6 SMILES CACTVS 3.385 "CC(=O)Nc1ccc(cc1)c2nc(N)nc(N)c2CCC3CC3" VF6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1ccc(cc1)c2c(c(nc(n2)N)N)CCC3CC3" VF6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1ccc(cc1)c2c(c(nc(n2)N)N)CCC3CC3" # _pdbx_chem_comp_identifier.comp_id VF6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VF6 "Create component" 2023-03-06 PDBE VF6 "Initial release" 2024-03-13 RCSB #