data_VF8 # _chem_comp.id VF8 _chem_comp.name "(3R,6R,7S,8E,11S,12R,22S)-6'-chloro-7-methoxy-11,12-dimethyl-13,13-dioxo-spiro[20-oxa-13-gamma6-thia-1,14-diazatetracyclo[14.7.2.03,6.019,24]pentacosa-8,16(25),17,19(24)-tetraene-22,1'-tetralin]-15-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H41 Cl N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-13 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 613.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VF8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AV9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VF8 C1 C1 C 0 1 N N S 4.463 -3.813 -23.581 -4.231 -1.539 0.762 C1 VF8 1 VF8 C2 C2 C 0 1 N N N 3.429 -3.965 -24.714 -4.165 -3.054 0.547 C2 VF8 2 VF8 C3 C3 C 0 1 N N N 3.791 -3.023 -25.826 -2.965 -3.383 -0.308 C3 VF8 3 VF8 O4 O1 O 0 1 N N N 2.922 -1.555 -28.814 0.554 -4.083 0.212 O4 VF8 4 VF8 C7 C4 C 0 1 N N N 4.851 -4.293 -29.647 0.539 -3.239 -2.799 C7 VF8 5 VF8 C8 C5 C 0 1 N N N 6.379 -4.397 -29.564 1.333 -1.947 -2.528 C8 VF8 6 VF8 C9 C6 C 0 1 N N R 6.402 -3.043 -28.826 0.554 -1.752 -1.224 C9 VF8 7 VF8 C10 C7 C 0 1 N N N 7.362 -1.949 -29.265 -0.165 -0.419 -1.086 C10 VF8 8 VF8 C11 C8 C 0 1 N N N 9.656 -2.983 -29.559 1.775 0.578 -0.158 C11 VF8 9 VF8 C12 C9 C 0 1 N N S 10.861 -2.165 -30.091 3.004 1.416 -0.517 C12 VF8 10 VF8 C13 C10 C 0 1 N N N 10.456 -1.124 -31.158 3.207 1.429 -2.031 C13 VF8 11 VF8 C14 C11 C 0 1 N N N 10.281 -1.711 -32.550 3.850 0.113 -2.475 C14 VF8 12 VF8 C15 C12 C 0 1 N N N 11.590 -2.294 -33.002 5.282 0.076 -1.941 C15 VF8 13 VF8 C16 C13 C 0 1 Y N N 12.131 -3.291 -32.010 5.269 0.280 -0.449 C16 VF8 14 VF8 C19 C14 C 0 1 Y N N 13.216 -5.151 -30.242 5.358 0.587 2.299 C19 VF8 15 VF8 C20 C15 C 0 1 Y N N 13.525 -5.195 -31.577 6.409 -0.030 1.644 C20 VF8 16 VF8 C21 C16 C 0 1 Y N N 13.006 -4.276 -32.465 6.361 -0.182 0.273 C21 VF8 17 VF8 C22 C17 C 0 1 N N N 11.522 -1.401 -28.954 2.742 2.864 -0.069 C22 VF8 18 VF8 C24 C18 C 0 1 Y N N 9.040 -1.909 -27.390 -0.067 1.863 -0.844 C24 VF8 19 VF8 C27 C19 C 0 1 Y N N 9.596 -1.434 -24.710 -1.673 3.941 0.068 C27 VF8 20 VF8 C30 C20 C 0 1 N N R 4.421 -2.429 -22.889 -5.649 -1.030 0.506 C30 VF8 21 VF8 C31 C21 C 0 1 N N N 3.280 -2.212 -21.906 -6.567 -1.476 1.649 C31 VF8 22 VF8 C32 C22 C 0 1 N N N 1.808 -2.392 -29.121 0.773 -5.402 0.716 C32 VF8 23 VF8 O3 O2 O 0 1 N N N 5.747 -0.543 -21.611 -6.524 1.230 -0.617 O3 VF8 24 VF8 S S1 S 0 1 N N N 5.908 -1.915 -22.006 -5.647 0.783 0.410 S VF8 25 VF8 O2 O3 O 0 1 N N N 6.205 -2.915 -21.020 -5.699 1.357 1.710 O2 VF8 26 VF8 C C23 C 0 1 N N N 4.356 -4.993 -22.614 -3.831 -1.229 2.207 C VF8 27 VF8 N1 N1 N 0 1 N N N 7.069 -1.984 -23.154 -4.125 1.158 -0.155 N1 VF8 28 VF8 C29 C24 C 0 1 N N N 7.136 -1.130 -24.247 -3.640 2.400 0.154 C29 VF8 29 VF8 O1 O4 O 0 1 N N N 6.287 -0.261 -24.448 -4.347 3.247 0.671 O1 VF8 30 VF8 C26 C25 C 0 1 Y N N 8.291 -1.326 -25.173 -2.214 2.673 -0.135 C26 VF8 31 VF8 C25 C26 C 0 1 Y N N 8.018 -1.549 -26.518 -1.403 1.633 -0.601 C25 VF8 32 VF8 N N2 N 0 1 N N R 8.733 -2.128 -28.782 0.760 0.754 -1.270 N VF8 33 VF8 C6 C27 C 0 1 N N R 4.951 -2.792 -29.269 -0.411 -2.868 -1.656 C6 VF8 34 VF8 C5 C28 C 0 1 N N S 4.026 -2.238 -28.175 -0.606 -3.960 -0.611 C5 VF8 35 VF8 C4 C29 C 0 1 N N N 3.627 -3.256 -27.117 -1.802 -3.616 0.245 C4 VF8 36 VF8 C28 C30 C 0 1 Y N N 10.624 -1.773 -25.568 -0.343 4.170 -0.213 C28 VF8 37 VF8 C23 C31 C 0 1 Y N N 10.353 -1.986 -26.910 0.466 3.132 -0.674 C23 VF8 38 VF8 O O5 O 0 1 N N N 11.473 -2.119 -27.702 1.764 3.414 -0.959 O VF8 39 VF8 C17 C32 C 0 1 Y N N 11.826 -3.212 -30.644 4.219 0.894 0.199 C17 VF8 40 VF8 C18 C33 C 0 1 Y N N 12.363 -4.165 -29.785 4.273 1.045 1.581 C18 VF8 41 VF8 CL CL1 CL 0 0 N N N 14.601 -6.431 -32.168 7.778 -0.610 2.540 CL VF8 42 VF8 H1 H1 H 0 1 N N N 5.453 -3.889 -24.055 -3.533 -1.056 0.082 H1 VF8 43 VF8 H2 H2 H 0 1 N N N 2.426 -3.721 -24.335 -4.076 -3.556 1.510 H2 VF8 44 VF8 H3 H3 H 0 1 N N N 3.439 -5.000 -25.088 -5.071 -3.391 0.042 H3 VF8 45 VF8 H4 H4 H 0 1 N N N 4.223 -2.073 -25.547 -3.072 -3.429 -1.382 H4 VF8 46 VF8 H5 H5 H 0 1 N N N 4.439 -4.480 -30.650 0.056 -3.247 -3.776 H5 VF8 47 VF8 H6 H6 H 0 1 N N N 4.316 -4.910 -28.910 1.115 -4.144 -2.607 H6 VF8 48 VF8 H7 H7 H 0 1 N N N 6.744 -5.245 -28.966 2.395 -2.147 -2.370 H7 VF8 49 VF8 H8 H8 H 0 1 N N N 6.887 -4.390 -30.539 1.156 -1.167 -3.265 H8 VF8 50 VF8 H9 H9 H 0 1 N N N 6.454 -3.197 -27.738 1.140 -2.011 -0.342 H9 VF8 51 VF8 H10 H10 H 0 1 N N N 7.383 -1.928 -30.365 -0.947 -0.363 -1.844 H10 VF8 52 VF8 H11 H11 H 0 1 N N N 6.985 -0.987 -28.887 -0.603 -0.364 -0.087 H11 VF8 53 VF8 H12 H12 H 0 1 N N N 9.112 -3.417 -30.411 2.052 -0.470 -0.075 H12 VF8 54 VF8 H13 H13 H 0 1 N N N 10.028 -3.791 -28.912 1.340 0.928 0.778 H13 VF8 55 VF8 H14 H14 H 0 1 N N N 11.237 -0.351 -31.203 2.252 1.563 -2.538 H14 VF8 56 VF8 H15 H15 H 0 1 N N N 9.504 -0.666 -30.852 3.866 2.260 -2.299 H15 VF8 57 VF8 H16 H16 H 0 1 N N N 9.969 -0.920 -33.248 3.293 -0.722 -2.054 H16 VF8 58 VF8 H17 H17 H 0 1 N N N 9.515 -2.500 -32.524 3.860 0.051 -3.560 H17 VF8 59 VF8 H18 H18 H 0 1 N N N 11.440 -2.798 -33.968 5.725 -0.891 -2.171 H18 VF8 60 VF8 H19 H19 H 0 1 N N N 12.320 -1.480 -33.122 5.861 0.869 -2.409 H19 VF8 61 VF8 H20 H20 H 0 1 N N N 13.633 -5.876 -29.558 5.387 0.710 3.372 H20 VF8 62 VF8 H21 H21 H 0 1 N N N 13.277 -4.319 -33.510 7.179 -0.665 -0.241 H21 VF8 63 VF8 H22 H22 H 0 1 N N N 12.575 -1.220 -29.216 2.362 2.869 0.948 H22 VF8 64 VF8 H23 H23 H 0 1 N N N 11.005 -0.438 -28.829 3.664 3.437 -0.135 H23 VF8 65 VF8 H24 H24 H 0 1 N N N 9.809 -1.251 -23.667 -2.295 4.742 0.439 H24 VF8 66 VF8 H25 H25 H 0 1 N N N 4.306 -1.680 -23.686 -6.020 -1.445 -0.434 H25 VF8 67 VF8 H26 H26 H 0 1 N N N 3.351 -1.201 -21.479 -6.199 -1.068 2.591 H26 VF8 68 VF8 H27 H27 H 0 1 N N N 2.319 -2.322 -22.430 -7.578 -1.113 1.466 H27 VF8 69 VF8 H28 H28 H 0 1 N N N 3.345 -2.956 -21.099 -6.576 -2.565 1.704 H28 VF8 70 VF8 H29 H29 H 0 1 N N N 1.020 -1.793 -29.602 -0.083 -5.707 1.319 H29 VF8 71 VF8 H30 H30 H 0 1 N N N 2.128 -3.192 -29.804 0.895 -6.094 -0.118 H30 VF8 72 VF8 H31 H31 H 0 1 N N N 1.417 -2.836 -28.194 1.673 -5.412 1.331 H31 VF8 73 VF8 H32 H32 H 0 1 N N N 5.097 -4.877 -21.809 -4.523 -1.722 2.890 H32 VF8 74 VF8 H33 H33 H 0 1 N N N 3.345 -5.021 -22.181 -2.820 -1.592 2.390 H33 VF8 75 VF8 H34 H34 H 0 1 N N N 4.549 -5.930 -23.157 -3.866 -0.152 2.370 H34 VF8 76 VF8 H35 H35 H 0 1 N N N 7.776 -2.686 -23.064 -3.618 0.535 -0.696 H35 VF8 77 VF8 H36 H36 H 0 1 N N N 7.009 -1.442 -26.887 -1.862 0.672 -0.772 H36 VF8 78 VF8 H37 H37 H 0 1 N N N 4.918 -2.160 -30.169 -1.364 -2.471 -2.020 H37 VF8 79 VF8 H38 H38 H 0 1 N N N 4.612 -1.470 -27.649 -0.789 -4.915 -1.113 H38 VF8 80 VF8 H39 H39 H 0 1 N N N 3.197 -4.196 -27.430 -1.694 -3.565 1.319 H39 VF8 81 VF8 H40 H40 H 0 1 N N N 11.633 -1.871 -25.195 0.079 5.154 -0.073 H40 VF8 82 VF8 H41 H41 H 0 1 N N N 12.107 -4.133 -28.736 3.455 1.525 2.098 H41 VF8 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VF8 C15 C14 SING N N 1 VF8 C15 C16 SING N N 2 VF8 C14 C13 SING N N 3 VF8 C21 C16 DOUB Y N 4 VF8 C21 C20 SING Y N 5 VF8 CL C20 SING N N 6 VF8 C16 C17 SING Y N 7 VF8 C20 C19 DOUB Y N 8 VF8 C13 C12 SING N N 9 VF8 C17 C12 SING N N 10 VF8 C17 C18 DOUB Y N 11 VF8 C19 C18 SING Y N 12 VF8 C12 C11 SING N N 13 VF8 C12 C22 SING N N 14 VF8 C7 C8 SING N N 15 VF8 C7 C6 SING N N 16 VF8 C8 C9 SING N N 17 VF8 C11 N SING N N 18 VF8 C6 C9 SING N N 19 VF8 C6 C5 SING N N 20 VF8 C10 C9 SING N N 21 VF8 C10 N SING N N 22 VF8 C32 O4 SING N N 23 VF8 C22 O SING N N 24 VF8 O4 C5 SING N N 25 VF8 N C24 SING N N 26 VF8 C5 C4 SING N N 27 VF8 O C23 SING N N 28 VF8 C24 C23 DOUB Y N 29 VF8 C24 C25 SING Y N 30 VF8 C4 C3 DOUB N E 31 VF8 C23 C28 SING Y N 32 VF8 C25 C26 DOUB Y N 33 VF8 C3 C2 SING N N 34 VF8 C28 C27 DOUB Y N 35 VF8 C26 C27 SING Y N 36 VF8 C26 C29 SING N N 37 VF8 C2 C1 SING N N 38 VF8 O1 C29 DOUB N N 39 VF8 C29 N1 SING N N 40 VF8 C1 C30 SING N N 41 VF8 C1 C SING N N 42 VF8 N1 S SING N N 43 VF8 C30 S SING N N 44 VF8 C30 C31 SING N N 45 VF8 S O3 DOUB N N 46 VF8 S O2 DOUB N N 47 VF8 C1 H1 SING N N 48 VF8 C2 H2 SING N N 49 VF8 C2 H3 SING N N 50 VF8 C3 H4 SING N N 51 VF8 C7 H5 SING N N 52 VF8 C7 H6 SING N N 53 VF8 C8 H7 SING N N 54 VF8 C8 H8 SING N N 55 VF8 C9 H9 SING N N 56 VF8 C10 H10 SING N N 57 VF8 C10 H11 SING N N 58 VF8 C11 H12 SING N N 59 VF8 C11 H13 SING N N 60 VF8 C13 H14 SING N N 61 VF8 C13 H15 SING N N 62 VF8 C14 H16 SING N N 63 VF8 C14 H17 SING N N 64 VF8 C15 H18 SING N N 65 VF8 C15 H19 SING N N 66 VF8 C19 H20 SING N N 67 VF8 C21 H21 SING N N 68 VF8 C22 H22 SING N N 69 VF8 C22 H23 SING N N 70 VF8 C27 H24 SING N N 71 VF8 C30 H25 SING N N 72 VF8 C31 H26 SING N N 73 VF8 C31 H27 SING N N 74 VF8 C31 H28 SING N N 75 VF8 C32 H29 SING N N 76 VF8 C32 H30 SING N N 77 VF8 C32 H31 SING N N 78 VF8 C H32 SING N N 79 VF8 C H33 SING N N 80 VF8 C H34 SING N N 81 VF8 N1 H35 SING N N 82 VF8 C25 H36 SING N N 83 VF8 C6 H37 SING N N 84 VF8 C5 H38 SING N N 85 VF8 C4 H39 SING N N 86 VF8 C28 H40 SING N N 87 VF8 C18 H41 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VF8 InChI InChI 1.06 "InChI=1S/C33H41ClN2O5S/c1-21-6-4-8-30(40-3)27-12-9-25(27)18-36-19-33(15-5-7-23-16-26(34)11-13-28(23)33)20-41-31-14-10-24(17-29(31)36)32(37)35-42(38,39)22(21)2/h4,8,10-11,13-14,16-17,21-22,25,27,30H,5-7,9,12,15,18-20H2,1-3H3,(H,35,37)/b8-4+/t21-,22+,25-,27+,30-,33-/m0/s1" VF8 InChIKey InChI 1.06 JQNINBDKGLWYMU-GEAQBIRJSA-N VF8 SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1\C=C\C[C@H](C)[C@@H](C)[S](=O)(=O)NC(=O)c2ccc3OC[C@]4(CCCc5cc(Cl)ccc45)C[N@@](C[C@@H]6CC[C@@H]16)c3c2" VF8 SMILES CACTVS 3.385 "CO[CH]1C=CC[CH](C)[CH](C)[S](=O)(=O)NC(=O)c2ccc3OC[C]4(CCCc5cc(Cl)ccc45)C[N](C[CH]6CC[CH]16)c3c2" VF8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C/C=C/[C@@H]([C@@H]2CC[C@H]2C[N@@]3C[C@@]4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)[C@@H]1C)OC" VF8 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC=CC(C2CCC2CN3CC4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)C1C)OC" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VF8 "Create component" 2021-05-13 PDBE VF8 "Modify name" 2021-05-14 PDBE VF8 "Initial release" 2023-05-24 RCSB #