data_VFD # _chem_comp.id VFD _chem_comp.name Olodanrigan _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H29 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "EMA401; (3S)-5-(benzyloxy)-2-(diphenylacetyl)-6-methoxy-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-06 _chem_comp.pdbx_modified_date 2022-02-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JNI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VFD N N1 N 0 1 N N N 27.348 -4.074 6.615 -1.232 0.367 1.242 N VFD 1 VFD CA C1 C 0 1 N N S 26.914 -4.115 5.198 -0.118 1.321 1.365 CA VFD 2 VFD C C2 C 0 1 N N N 26.197 -2.801 4.783 -0.556 2.681 0.887 C VFD 3 VFD O O1 O 0 1 N N N 25.288 -2.878 3.908 -1.480 3.242 1.426 O VFD 4 VFD CB C3 C 0 1 N N N 26.022 -5.327 4.909 1.032 0.813 0.496 CB VFD 5 VFD CG C4 C 0 1 Y N N 25.008 -5.676 5.968 1.281 -0.652 0.740 CG VFD 6 VFD CD1 C5 C 0 1 Y N N 23.891 -6.474 5.670 2.521 -1.166 0.368 CD1 VFD 7 VFD CD2 C6 C 0 1 Y N N 25.174 -5.212 7.277 0.342 -1.487 1.306 CD2 VFD 8 VFD CAA C7 C 0 1 N N N 20.862 -7.970 7.162 4.249 -4.400 0.420 CAA VFD 9 VFD CAC C8 C 0 1 Y N N 22.940 -6.814 6.641 2.811 -2.511 0.559 CAC VFD 10 VFD CAG C9 C 0 1 N N N 26.348 -4.357 7.657 -1.015 -0.991 1.753 CAG VFD 11 VFD CAN C10 C 0 1 N N N 28.652 -3.759 7.063 -2.407 0.728 0.688 CAN VFD 12 VFD CAP C11 C 0 1 N N N 29.734 -3.437 6.013 -3.490 -0.299 0.482 CAP VFD 13 VFD CAQ C12 C 0 1 Y N N 30.843 -2.528 6.525 -4.786 0.397 0.152 CAQ VFD 14 VFD CAR C13 C 0 1 Y N N 31.534 -2.754 7.729 -5.934 0.088 0.857 CAR VFD 15 VFD CAS C14 C 0 1 Y N N 32.542 -1.891 8.149 -7.123 0.726 0.555 CAS VFD 16 VFD CAT C15 C 0 1 Y N N 32.882 -0.789 7.373 -7.162 1.673 -0.452 CAT VFD 17 VFD CAU C16 C 0 1 Y N N 32.213 -0.550 6.177 -6.014 1.981 -1.156 CAU VFD 18 VFD CAV C17 C 0 1 Y N N 31.206 -1.411 5.757 -4.824 1.347 -0.850 CAV VFD 19 VFD CAW C18 C 0 1 Y N N 30.276 -4.652 5.265 -3.107 -1.212 -0.654 CAW VFD 20 VFD CAX C19 C 0 1 Y N N 30.494 -4.546 3.884 -3.170 -2.583 -0.490 CAX VFD 21 VFD CAY C20 C 0 1 Y N N 30.984 -5.615 3.143 -2.823 -3.421 -1.534 CAY VFD 22 VFD CAZ C21 C 0 1 Y N N 31.269 -6.819 3.772 -2.415 -2.887 -2.742 CAZ VFD 23 VFD CBA C22 C 0 1 Y N N 31.062 -6.949 5.139 -2.353 -1.516 -2.906 CBA VFD 24 VFD CBB C23 C 0 1 Y N N 30.570 -5.879 5.883 -2.699 -0.678 -1.862 CBB VFD 25 VFD CBC C24 C 0 1 Y N N 24.225 -5.546 8.252 0.632 -2.831 1.492 CBC VFD 26 VFD CBD C25 C 0 1 Y N N 23.122 -6.336 7.947 1.858 -3.345 1.122 CBD VFD 27 VFD CBF C26 C 0 1 N N N 24.460 -8.174 4.192 4.355 0.308 0.710 CBF VFD 28 VFD CBG C27 C 0 1 Y N N 23.820 -8.989 3.097 5.309 1.168 -0.078 CBG VFD 29 VFD CBH C28 C 0 1 Y N N 22.432 -8.971 2.909 4.989 2.485 -0.350 CBH VFD 30 VFD CBI C29 C 0 1 Y N N 21.846 -9.720 1.892 5.864 3.274 -1.073 CBI VFD 31 VFD CBJ C30 C 0 1 Y N N 22.638 -10.494 1.049 7.059 2.746 -1.524 CBJ VFD 32 VFD CBK C31 C 0 1 Y N N 24.017 -10.519 1.225 7.380 1.429 -1.251 CBK VFD 33 VFD CBL C32 C 0 1 Y N N 24.604 -9.771 2.240 6.508 0.642 -0.523 CBL VFD 34 VFD OAB O2 O 0 1 N N N 21.874 -7.619 6.199 4.023 -3.007 0.194 OAB VFD 35 VFD OAO O3 O 0 1 N N N 28.929 -3.739 8.257 -2.591 1.880 0.355 OAO VFD 36 VFD OBE O4 O 0 1 N N N 23.726 -6.944 4.366 3.454 -0.346 -0.185 OBE VFD 37 VFD OXX O5 O 0 1 N N N 26.624 -1.770 5.381 0.080 3.270 -0.138 OXX VFD 38 VFD H1 H1 H 0 1 N N N 27.812 -4.209 4.569 0.204 1.381 2.404 H1 VFD 39 VFD H2 H2 H 0 1 N N N 25.476 -5.127 3.975 0.783 0.964 -0.554 H2 VFD 40 VFD H3 H3 H 0 1 N N N 26.677 -6.200 4.771 1.936 1.374 0.734 H3 VFD 41 VFD H4 H4 H 0 1 N N N 20.098 -8.597 6.679 5.252 -4.665 0.086 H4 VFD 42 VFD H5 H5 H 0 1 N N N 21.323 -8.527 7.991 4.153 -4.616 1.484 H5 VFD 43 VFD H6 H6 H 0 1 N N N 20.393 -7.054 7.551 3.515 -4.983 -0.137 H6 VFD 44 VFD H7 H7 H 0 1 N N N 26.868 -4.861 8.485 -1.061 -0.980 2.842 H7 VFD 45 VFD H8 H8 H 0 1 N N N 25.953 -3.391 8.006 -1.789 -1.653 1.365 H8 VFD 46 VFD H9 H9 H 0 1 N N N 29.213 -2.844 5.247 -3.614 -0.885 1.393 H9 VFD 47 VFD H10 H10 H 0 1 N N N 31.279 -3.610 8.336 -5.903 -0.651 1.643 H10 VFD 48 VFD H11 H11 H 0 1 N N N 33.060 -2.078 9.078 -8.020 0.485 1.105 H11 VFD 49 VFD H12 H12 H 0 1 N N N 33.664 -0.119 7.698 -8.091 2.171 -0.688 H12 VFD 50 VFD H13 H13 H 0 1 N N N 32.477 0.306 5.574 -6.045 2.721 -1.943 H13 VFD 51 VFD H14 H14 H 0 1 N N N 30.695 -1.217 4.825 -3.927 1.588 -1.401 H14 VFD 52 VFD H15 H15 H 0 1 N N N 30.276 -3.613 3.385 -3.489 -3.000 0.453 H15 VFD 53 VFD H16 H16 H 0 1 N N N 31.143 -5.509 2.080 -2.872 -4.492 -1.406 H16 VFD 54 VFD H17 H17 H 0 1 N N N 31.650 -7.652 3.200 -2.144 -3.541 -3.557 H17 VFD 55 VFD H18 H18 H 0 1 N N N 31.284 -7.886 5.629 -2.034 -1.099 -3.850 H18 VFD 56 VFD H19 H19 H 0 1 N N N 30.413 -5.994 6.945 -2.654 0.393 -1.992 H19 VFD 57 VFD H20 H20 H 0 1 N N N 24.353 -5.183 9.261 -0.110 -3.482 1.930 H20 VFD 58 VFD H21 H21 H 0 1 N N N 22.405 -6.582 8.716 2.074 -4.393 1.270 H21 VFD 59 VFD H22 H22 H 0 1 N N N 24.445 -8.746 5.131 4.918 -0.439 1.270 H22 VFD 60 VFD H23 H23 H 0 1 N N N 25.500 -7.945 3.918 3.791 0.932 1.403 H23 VFD 61 VFD H24 H24 H 0 1 N N N 21.811 -8.371 3.558 4.055 2.898 0.002 H24 VFD 62 VFD H25 H25 H 0 1 N N N 20.775 -9.700 1.757 5.614 4.303 -1.285 H25 VFD 63 VFD H26 H26 H 0 1 N N N 22.182 -11.074 0.260 7.741 3.362 -2.092 H26 VFD 64 VFD H27 H27 H 0 1 N N N 24.633 -11.120 0.573 8.314 1.017 -1.604 H27 VFD 65 VFD H28 H28 H 0 1 N N N 25.676 -9.794 2.369 6.758 -0.387 -0.311 H28 VFD 66 VFD H29 H29 H 0 1 N N N 26.149 -1.006 5.075 -0.237 4.143 -0.408 H29 VFD 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VFD CBJ CBK DOUB Y N 1 VFD CBJ CBI SING Y N 2 VFD CBK CBL SING Y N 3 VFD CBI CBH DOUB Y N 4 VFD CBL CBG DOUB Y N 5 VFD CBH CBG SING Y N 6 VFD CBG CBF SING N N 7 VFD CAY CAZ DOUB Y N 8 VFD CAY CAX SING Y N 9 VFD CAZ CBA SING Y N 10 VFD CAX CAW DOUB Y N 11 VFD O C DOUB N N 12 VFD CBF OBE SING N N 13 VFD OBE CD1 SING N N 14 VFD C CA SING N N 15 VFD C OXX SING N N 16 VFD CB CA SING N N 17 VFD CB CG SING N N 18 VFD CBA CBB DOUB Y N 19 VFD CA N SING N N 20 VFD CAW CBB SING Y N 21 VFD CAW CAP SING N N 22 VFD CD1 CG DOUB Y N 23 VFD CD1 CAC SING Y N 24 VFD CAV CAU DOUB Y N 25 VFD CAV CAQ SING Y N 26 VFD CG CD2 SING Y N 27 VFD CAP CAQ SING N N 28 VFD CAP CAN SING N N 29 VFD CAU CAT SING Y N 30 VFD OAB CAC SING N N 31 VFD OAB CAA SING N N 32 VFD CAQ CAR DOUB Y N 33 VFD N CAN SING N N 34 VFD N CAG SING N N 35 VFD CAC CBD DOUB Y N 36 VFD CAN OAO DOUB N N 37 VFD CD2 CAG SING N N 38 VFD CD2 CBC DOUB Y N 39 VFD CAT CAS DOUB Y N 40 VFD CAR CAS SING Y N 41 VFD CBD CBC SING Y N 42 VFD CA H1 SING N N 43 VFD CB H2 SING N N 44 VFD CB H3 SING N N 45 VFD CAA H4 SING N N 46 VFD CAA H5 SING N N 47 VFD CAA H6 SING N N 48 VFD CAG H7 SING N N 49 VFD CAG H8 SING N N 50 VFD CAP H9 SING N N 51 VFD CAR H10 SING N N 52 VFD CAS H11 SING N N 53 VFD CAT H12 SING N N 54 VFD CAU H13 SING N N 55 VFD CAV H14 SING N N 56 VFD CAX H15 SING N N 57 VFD CAY H16 SING N N 58 VFD CAZ H17 SING N N 59 VFD CBA H18 SING N N 60 VFD CBB H19 SING N N 61 VFD CBC H20 SING N N 62 VFD CBD H21 SING N N 63 VFD CBF H22 SING N N 64 VFD CBF H23 SING N N 65 VFD CBH H24 SING N N 66 VFD CBI H25 SING N N 67 VFD CBJ H26 SING N N 68 VFD CBK H27 SING N N 69 VFD CBL H28 SING N N 70 VFD OXX H29 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VFD SMILES ACDLabs 12.01 "N3(C(=O)C(c1ccccc1)c2ccccc2)Cc4c(CC3C(O)=O)c(c(cc4)OC)OCc5ccccc5" VFD InChI InChI 1.03 "InChI=1S/C32H29NO5/c1-37-28-18-17-25-20-33(31(34)29(23-13-7-3-8-14-23)24-15-9-4-10-16-24)27(32(35)36)19-26(25)30(28)38-21-22-11-5-2-6-12-22/h2-18,27,29H,19-21H2,1H3,(H,35,36)/t27-/m0/s1" VFD InChIKey InChI 1.03 GHBCIXGRCZIPNQ-MHZLTWQESA-N VFD SMILES_CANONICAL CACTVS 3.385 "COc1ccc2CN([C@@H](Cc2c1OCc3ccccc3)C(O)=O)C(=O)C(c4ccccc4)c5ccccc5" VFD SMILES CACTVS 3.385 "COc1ccc2CN([CH](Cc2c1OCc3ccccc3)C(O)=O)C(=O)C(c4ccccc4)c5ccccc5" VFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OCc3ccccc3)C[C@H](N(C2)C(=O)C(c4ccccc4)c5ccccc5)C(=O)O" VFD SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OCc3ccccc3)CC(N(C2)C(=O)C(c4ccccc4)c5ccccc5)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VFD "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-5-(benzyloxy)-2-(diphenylacetyl)-6-methoxy-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid" VFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-2-(2,2-diphenylethanoyl)-6-methoxy-5-phenylmethoxy-3,4-dihydro-1~{H}-isoquinoline-3-carboxylic acid" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VFD EMA401 PDB ? 2 VFD "(3S)-5-(benzyloxy)-2-(diphenylacetyl)-6-methoxy-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid" PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VFD "Create component" 2020-08-06 RCSB VFD "Modify synonyms" 2021-03-13 RCSB VFD "Initial release" 2022-02-09 RCSB ##