data_VFF # _chem_comp.id VFF _chem_comp.name "methyl 4-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]benzoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VFF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CQ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VFF C10 C1 C 0 1 N N N N N N 6.202 8.848 26.222 1.273 -3.763 -0.520 C10 VFF 1 VFF C13 C2 C 0 1 Y N N N N N 9.625 5.175 28.548 -0.192 0.923 0.002 C13 VFF 2 VFF C15 C3 C 0 1 Y N N N N N 7.960 6.131 30.059 1.822 2.067 -0.629 C15 VFF 3 VFF C17 C4 C 0 1 N N N N N N 8.458 7.397 32.137 4.053 1.110 -0.075 C17 VFF 4 VFF C21 C5 C 0 1 Y N N N N N 10.237 6.434 30.573 1.937 -0.038 0.559 C21 VFF 5 VFF C22 C6 C 0 1 Y N N N N N 10.587 5.708 29.415 0.562 -0.098 0.583 C22 VFF 6 VFF C02 C7 C 0 1 Y N N N N N 11.251 2.652 26.422 -3.716 1.925 0.205 C02 VFF 7 VFF C04 C8 C 0 1 Y N N N N N 10.102 4.050 24.937 -3.747 -0.371 -0.034 C04 VFF 8 VFF C06 C9 C 0 1 Y N N N N N 9.635 4.825 26.026 -2.338 -0.373 -0.071 C06 VFF 9 VFF C07 C10 C 0 1 N N N N N N 8.810 5.923 25.799 -1.606 -1.595 -0.218 C07 VFF 10 VFF C08 C11 C 0 1 N N N N N N 8.157 6.891 25.748 -1.006 -2.597 -0.339 C08 VFF 11 VFF C09 C12 C 0 1 N N N N N N 7.441 8.098 25.822 -0.254 -3.853 -0.490 C09 VFF 12 VFF C11 C13 C 0 1 N N N N N N 7.482 9.578 25.736 0.566 -4.335 0.710 C11 VFF 13 VFF C12 C14 C 0 1 Y N N N N N 10.025 4.419 27.297 -1.672 0.861 0.035 C12 VFF 14 VFF C14 C15 C 0 1 Y N N N N N 8.305 5.413 28.918 0.447 2.006 -0.603 C14 VFF 15 VFF C16 C16 C 0 1 Y N N N N N 8.910 6.652 30.922 2.578 1.045 -0.048 C16 VFF 16 VFF C19 C17 C 0 1 N N N N N N 8.936 8.531 34.173 6.226 0.255 0.421 C19 VFF 17 VFF N01 N1 N 0 1 N N N N N N 12.083 1.539 26.570 -4.424 3.105 0.346 N01 VFF 18 VFF N03 N2 N 0 1 Y N N N N N 10.916 2.946 25.107 -4.384 0.785 0.103 N03 VFF 19 VFF N05 N3 N 0 1 N N N N N N 9.791 4.313 23.648 -4.454 -1.555 -0.140 N05 VFF 20 VFF N23 N4 N 0 1 Y N N N N N 10.837 3.370 27.529 -2.394 1.972 0.170 N23 VFF 21 VFF O18 O1 O 0 1 N N N N N N 9.389 7.819 33.022 4.781 0.125 0.485 O18 VFF 22 VFF O20 O2 O 0 1 N N N N N N 7.299 7.659 32.405 4.610 2.052 -0.603 O20 VFF 23 VFF H1 H1 H 0 1 N N N N N N 5.901 8.899 27.279 1.806 -4.462 -1.165 H1 VFF 24 VFF H2 H2 H 0 1 N N N N N N 5.305 8.817 25.586 1.721 -2.773 -0.428 H2 VFF 25 VFF H3 H3 H 0 1 N N N N N N 6.914 6.288 30.280 2.317 2.905 -1.098 H3 VFF 26 VFF H4 H4 H 0 1 N N N N N N 11.020 6.830 31.203 2.520 -0.828 1.008 H4 VFF 27 VFF H5 H5 H 0 1 N N N N N N 11.633 5.558 29.189 0.066 -0.935 1.051 H5 VFF 28 VFF H6 H6 H 0 1 N N N N N N 7.098 8.007 24.781 -0.726 -4.611 -1.115 H6 VFF 29 VFF H7 H7 H 0 1 N N N N N N 8.092 10.155 26.447 0.632 -5.410 0.874 H7 VFF 30 VFF H8 H8 H 0 1 N N N N N N 7.496 10.074 24.754 0.547 -3.721 1.611 H8 VFF 31 VFF H9 H9 H 0 1 N N N N N N 7.515 5.024 28.293 -0.137 2.796 -1.052 H9 VFF 32 VFF H10 H10 H 0 1 N N N N N N 9.799 8.808 34.797 6.690 -0.604 0.907 H10 VFF 33 VFF H11 H11 H 0 1 N N N N N N 8.406 9.441 33.856 6.541 0.295 -0.622 H11 VFF 34 VFF H12 H12 H 0 1 N N N N N N 8.254 7.893 34.754 6.531 1.169 0.928 H12 VFF 35 VFF H13 H13 H 0 1 N N N N N N 12.286 1.152 25.671 -3.951 3.949 0.418 H13 VFF 36 VFF H14 H14 H 0 1 N N N N N N 12.935 1.817 27.014 -5.393 3.089 0.374 H14 VFF 37 VFF H15 H15 H 0 1 N N N N N N 10.225 3.635 23.055 -5.423 -1.545 -0.114 H15 VFF 38 VFF H16 H16 H 0 1 N N N N N N 8.799 4.272 23.530 -3.980 -2.395 -0.240 H16 VFF 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VFF N05 C04 SING N N 1 VFF C04 N03 DOUB Y N 2 VFF C04 C06 SING Y N 3 VFF N03 C02 SING Y N 4 VFF C11 C09 SING N N 5 VFF C11 C10 SING N N 6 VFF C08 C07 TRIP N N 7 VFF C08 C09 SING N N 8 VFF C07 C06 SING N N 9 VFF C09 C10 SING N N 10 VFF C06 C12 DOUB Y N 11 VFF C02 N01 SING N N 12 VFF C02 N23 DOUB Y N 13 VFF C12 N23 SING Y N 14 VFF C12 C13 SING N N 15 VFF C13 C14 DOUB Y N 16 VFF C13 C22 SING Y N 17 VFF C14 C15 SING Y N 18 VFF C22 C21 DOUB Y N 19 VFF C15 C16 DOUB Y N 20 VFF C21 C16 SING Y N 21 VFF C16 C17 SING N N 22 VFF C17 O20 DOUB N N 23 VFF C17 O18 SING N N 24 VFF O18 C19 SING N N 25 VFF C10 H1 SING N N 26 VFF C10 H2 SING N N 27 VFF C15 H3 SING N N 28 VFF C21 H4 SING N N 29 VFF C22 H5 SING N N 30 VFF C09 H6 SING N N 31 VFF C11 H7 SING N N 32 VFF C11 H8 SING N N 33 VFF C14 H9 SING N N 34 VFF C19 H10 SING N N 35 VFF C19 H11 SING N N 36 VFF C19 H12 SING N N 37 VFF N01 H13 SING N N 38 VFF N01 H14 SING N N 39 VFF N05 H15 SING N N 40 VFF N05 H16 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VFF InChI InChI 1.06 "InChI=1S/C17H16N4O2/c1-23-16(22)12-7-5-11(6-8-12)14-13(9-4-10-2-3-10)15(18)21-17(19)20-14/h5-8,10H,2-3H2,1H3,(H4,18,19,20,21)" VFF InChIKey InChI 1.06 VQXXOXYFIZOZAI-UHFFFAOYSA-N VFF SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1ccc(cc1)c2nc(N)nc(N)c2C#CC3CC3" VFF SMILES CACTVS 3.385 "COC(=O)c1ccc(cc1)c2nc(N)nc(N)c2C#CC3CC3" VFF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)c1ccc(cc1)c2c(c(nc(n2)N)N)C#CC3CC3" VFF SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1ccc(cc1)c2c(c(nc(n2)N)N)C#CC3CC3" # _pdbx_chem_comp_identifier.comp_id VFF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 4-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]benzoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VFF "Create component" 2023-03-06 PDBE VFF "Initial release" 2024-03-13 RCSB #