data_VG1 # _chem_comp.id VG1 _chem_comp.name ALPHA-D-GLUCOSE-1-PHOSPHATE-6-VANADATE _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 O12 P V" _chem_comp.mon_nstd_parent_comp_id GLC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-24 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.075 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C4G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VG1 C1 C1 C 0 1 N N R 39.548 68.756 74.412 -0.008 -0.798 2.057 C1 VG1 1 VG1 C2 C2 C 0 1 N N R 39.978 70.164 73.917 1.327 -0.844 2.802 C2 VG1 2 VG1 C3 C3 C 0 1 N N S 38.752 70.876 73.276 2.231 0.277 2.277 C3 VG1 3 VG1 C4 C4 C 0 1 N N S 38.218 69.956 72.157 2.326 0.161 0.752 C4 VG1 4 VG1 C5 C5 C 0 1 N N R 37.900 68.547 72.681 0.913 0.133 0.164 C5 VG1 5 VG1 C6 C6 C 0 1 N N N 37.364 67.735 71.578 0.998 0.050 -1.360 C6 VG1 6 VG1 O1 O1 O 0 1 N N N 38.402 68.864 75.281 -0.618 0.477 2.264 O1 VG1 7 VG1 O2 O2 O 0 1 N N N 40.390 70.888 75.106 1.100 -0.669 4.202 O2 VG1 8 VG1 O3 O3 O 0 1 N N N 39.238 72.095 72.645 3.534 0.151 2.850 O3 VG1 9 VG1 O4 O4 O 0 1 N N N 37.098 70.496 71.439 3.040 1.283 0.231 O4 VG1 10 VG1 O5 O5 O 0 1 N N N 39.183 68.017 73.246 0.205 -1.000 0.661 O5 VG1 11 VG1 O6 O6 O 0 1 N N N 38.453 67.419 70.766 -0.320 0.024 -1.910 O6 VG1 12 VG1 P P P 0 1 N N N 38.464 68.086 76.558 -2.211 0.244 2.211 P VG1 13 VG1 OP1 OP1 O 0 1 N N N 39.744 67.312 76.621 -2.965 1.648 2.439 OP1 VG1 14 VG1 OP2 OP2 O 0 1 N N N 38.377 69.058 77.694 -2.618 -0.357 0.775 OP2 VG1 15 VG1 OP3 OP3 O 0 1 N N N 37.315 67.126 76.616 -2.606 -0.705 3.275 OP3 VG1 16 VG1 V V V 0 1 N N N 38.552 66.540 69.107 -0.133 -0.074 -3.737 V VG1 17 VG1 OV1 OV1 O 0 1 N N N 39.591 67.591 68.205 -1.796 -0.112 -4.523 OV1 VG1 18 VG1 OV2 OV2 O 0 1 N N N 39.255 65.278 70.029 0.666 1.189 -4.256 OV2 VG1 19 VG1 OV3 OV3 O 0 1 N N N 36.828 66.734 68.998 0.658 -1.392 -4.116 OV3 VG1 20 VG1 H1 H1 H 0 1 N N N 40.371 68.262 74.979 -0.664 -1.580 2.440 H1 VG1 21 VG1 H2 H2 H 0 1 N N N 40.793 70.112 73.158 1.809 -1.807 2.628 H2 VG1 22 VG1 H3 H3 H 0 1 N N N 37.964 71.095 74.033 1.805 1.244 2.545 H3 VG1 23 VG1 H4 H4 H 0 1 N N N 39.052 69.884 71.420 2.848 -0.758 0.488 H4 VG1 24 VG1 H5 H5 H 0 1 N N N 37.120 68.534 73.477 0.385 1.043 0.449 H5 VG1 25 VG1 H61 H61 H 0 1 N N N 36.791 66.841 71.921 1.533 0.919 -1.742 H61 VG1 26 VG1 H62 H62 H 0 1 N N N 36.528 68.228 71.028 1.528 -0.857 -1.646 H62 VG1 27 VG1 HO2 HO2 H 0 1 N Y N 40.653 71.749 74.803 0.525 -1.393 4.485 HO2 VG1 28 VG1 HO3 HO3 H 0 1 N Y N 38.489 72.529 72.253 3.426 0.224 3.808 HO3 VG1 29 VG1 HO4 HO4 H 0 1 N Y N 36.769 69.929 70.750 3.920 1.265 0.631 HO4 VG1 30 VG1 HOP1 HOP1 H 0 0 N N N 39.783 66.818 77.431 -3.914 1.465 2.400 HOP1 VG1 31 VG1 HOP2 HOP2 H 0 0 N N N 38.416 68.564 78.504 -2.344 0.291 0.112 HOP2 VG1 32 VG1 HTV HTV H 0 1 N N N 39.641 67.146 67.366 -1.653 -0.164 -5.478 HTV VG1 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VG1 C1 C2 SING N N 1 VG1 C1 O1 SING N N 2 VG1 C1 O5 SING N N 3 VG1 C1 H1 SING N N 4 VG1 C2 C3 SING N N 5 VG1 C2 O2 SING N N 6 VG1 C2 H2 SING N N 7 VG1 C3 C4 SING N N 8 VG1 C3 O3 SING N N 9 VG1 C3 H3 SING N N 10 VG1 C4 C5 SING N N 11 VG1 C4 O4 SING N N 12 VG1 C4 H4 SING N N 13 VG1 C5 C6 SING N N 14 VG1 C5 O5 SING N N 15 VG1 C5 H5 SING N N 16 VG1 C6 O6 SING N N 17 VG1 C6 H61 SING N N 18 VG1 C6 H62 SING N N 19 VG1 O1 P SING N N 20 VG1 O2 HO2 SING N N 21 VG1 O3 HO3 SING N N 22 VG1 O4 HO4 SING N N 23 VG1 O6 V SING N N 24 VG1 P OP1 SING N N 25 VG1 P OP2 SING N N 26 VG1 P OP3 DOUB N N 27 VG1 OP1 HOP1 SING N N 28 VG1 OP2 HOP2 SING N N 29 VG1 V OV1 SING N N 30 VG1 V OV2 DOUB N N 31 VG1 V OV3 DOUB N N 32 VG1 OV1 HTV SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VG1 SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1O)CO[V](=O)(=O)O)(O)O" VG1 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@H](O)[C@@H](CO[V](O)(=O)=O)O[C@H](O[P](O)(O)=O)[C@@H]1O" VG1 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](CO[V](O)(=O)=O)O[CH](O[P](O)(O)=O)[CH]1O" VG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O)O[V](=O)(=O)O" VG1 SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O[V](=O)(=O)O" VG1 InChI InChI 1.03 "InChI=1S/C6H12O9P.H2O.2O.V/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13;;;;/h2-6,8-10H,1H2,(H2,11,12,13);1H2;;;/q-1;;;;+2/p-1/t2-,3-,4+,5-,6-;;;;/m1..../s1" VG1 InChIKey InChI 1.03 SYRDAPWACIANBN-QMKHLHGBSA-M # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VG1 "SYSTEMATIC NAME" ACDLabs 10.04 "hydroxy(dioxo)(1-O-phosphono-alpha-D-glucopyranosato-kappaO~6~)vanadium" VG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "hydroxy-dioxo-[[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-phosphonooxy-oxan-2-yl]methoxy]vanadium" # _pdbx_chem_comp_related.comp_id VG1 _pdbx_chem_comp_related.related_comp_id GLC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 VG1 C1 GLC C1 "Carbohydrate core" 2 VG1 C2 GLC C2 "Carbohydrate core" 3 VG1 C3 GLC C3 "Carbohydrate core" 4 VG1 C4 GLC C4 "Carbohydrate core" 5 VG1 C5 GLC C5 "Carbohydrate core" 6 VG1 C6 GLC C6 "Carbohydrate core" 7 VG1 O1 GLC O1 "Carbohydrate core" 8 VG1 O2 GLC O2 "Carbohydrate core" 9 VG1 O3 GLC O3 "Carbohydrate core" 10 VG1 O4 GLC O4 "Carbohydrate core" 11 VG1 O5 GLC O5 "Carbohydrate core" 12 VG1 O6 GLC O6 "Carbohydrate core" 13 VG1 H1 GLC H1 "Carbohydrate core" 14 VG1 H2 GLC H2 "Carbohydrate core" 15 VG1 H3 GLC H3 "Carbohydrate core" 16 VG1 H4 GLC H4 "Carbohydrate core" 17 VG1 H5 GLC H5 "Carbohydrate core" 18 VG1 H61 GLC H61 "Carbohydrate core" 19 VG1 H62 GLC H62 "Carbohydrate core" 20 VG1 HO2 GLC HO2 "Carbohydrate core" 21 VG1 HO3 GLC HO3 "Carbohydrate core" 22 VG1 HO4 GLC HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support VG1 "CARBOHYDRATE ISOMER" D PDB ? VG1 "CARBOHYDRATE RING" pyranose PDB ? VG1 "CARBOHYDRATE ANOMER" alpha PDB ? VG1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VG1 "Create component" 1999-08-24 EBI VG1 "Modify descriptor" 2011-06-04 RCSB VG1 "Other modification" 2020-07-03 RCSB VG1 "Modify parent residue" 2020-07-17 RCSB VG1 "Modify internal type" 2020-07-17 RCSB VG1 "Modify linking type" 2020-07-17 RCSB VG1 "Modify leaving atom flag" 2020-07-17 RCSB ##