data_VG3
#
_chem_comp.id VG3
_chem_comp.name "N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(pentylsulfonyl)benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C31 H45 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 571.771
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VG3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VIY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VG3 C1 C1 C 0 1 N N N 30.547 1.245 34.359 30.547 1.245 34.359 C1 VG3 1
VG3 N2 N2 N 0 1 N N N 29.360 1.456 33.717 29.360 1.456 33.717 N2 VG3 2
VG3 C3 C3 C 0 1 N N S 29.202 2.345 32.550 29.202 2.345 32.550 C3 VG3 3
VG3 C4 C4 C 0 1 N N R 28.337 3.524 33.019 28.337 3.524 33.019 C4 VG3 4
VG3 C5 C5 C 0 1 N N N 28.560 1.564 31.376 28.560 1.564 31.376 C5 VG3 5
VG3 O6 O6 O 0 1 N N N 31.504 2.017 34.224 31.504 2.017 34.224 O6 VG3 6
VG3 C7 C7 C 0 1 Y N N 30.572 0.047 35.215 30.572 0.047 35.215 C7 VG3 7
VG3 C8 C8 C 0 1 Y N N 30.153 -1.229 34.731 30.153 -1.229 34.731 C8 VG3 8
VG3 C9 C9 C 0 1 Y N N 30.176 -2.361 35.583 30.176 -2.361 35.583 C9 VG3 9
VG3 C10 C10 C 0 1 Y N N 30.611 -2.234 36.921 30.611 -2.234 36.921 C10 VG3 10
VG3 C11 C11 C 0 1 Y N N 31.029 -0.973 37.410 31.029 -0.973 37.410 C11 VG3 11
VG3 C12 C12 C 0 1 Y N N 31.011 0.168 36.565 31.011 0.168 36.565 C12 VG3 12
VG3 C13 C13 C 0 1 Y N N 29.209 0.224 31.102 29.209 0.224 31.102 C13 VG3 13
VG3 C14 C14 C 0 1 Y N N 28.428 -0.965 31.089 28.428 -0.965 31.089 C14 VG3 14
VG3 C15 C15 C 0 1 Y N N 29.035 -2.220 30.835 29.035 -2.220 30.835 C15 VG3 15
VG3 C16 C16 C 0 1 Y N N 30.427 -2.296 30.593 30.427 -2.296 30.593 C16 VG3 16
VG3 C17 C17 C 0 1 Y N N 31.214 -1.117 30.605 31.214 -1.117 30.605 C17 VG3 17
VG3 C18 C18 C 0 1 Y N N 30.609 0.136 30.857 30.609 0.136 30.857 C18 VG3 18
VG3 O19 O19 O 0 1 N N N 28.098 4.450 31.987 28.098 4.450 31.987 O19 VG3 19
VG3 C20 C20 C 0 1 N N S 28.956 6.745 34.890 28.956 6.745 34.890 C20 VG3 20
VG3 C21 C21 C 0 1 N N N 28.993 4.282 34.186 28.993 4.282 34.186 C21 VG3 21
VG3 N22 N22 N 0 1 N N N 28.273 5.524 34.425 28.273 5.524 34.425 N22 VG3 22
VG3 S23 S23 S 0 1 N N N 31.555 -0.833 39.100 31.555 -0.833 39.100 S23 VG3 23
VG3 C24 C24 C 0 1 N N N 29.526 6.525 36.307 29.526 6.525 36.307 C24 VG3 24
VG3 C38 C38 C 0 1 N N N 30.091 7.154 33.904 30.091 7.154 33.904 C38 VG3 25
VG3 N39 N39 N 0 1 N N N 29.635 7.931 32.904 29.635 7.931 32.904 N39 VG3 26
VG3 C40 C40 C 0 1 N N N 30.479 8.402 31.803 30.479 8.402 31.803 C40 VG3 27
VG3 O41 O41 O 0 1 N N N 31.256 6.777 34.042 31.256 6.777 34.042 O41 VG3 28
VG3 C43 C43 C 0 1 N N N 30.895 9.865 32.078 30.895 9.865 32.078 C43 VG3 29
VG3 C44 C44 C 0 1 N N N 31.780 10.403 30.884 31.780 10.403 30.884 C44 VG3 30
VG3 C45 C45 C 0 1 N N N 31.086 10.244 29.507 31.086 10.244 29.507 C45 VG3 31
VG3 C46 C46 C 0 1 N N N 30.568 8.798 29.279 30.568 8.798 29.279 C46 VG3 32
VG3 C47 C47 C 0 1 N N N 29.707 8.295 30.468 29.707 8.295 30.468 C47 VG3 33
VG3 C60 C60 C 0 1 N N N 32.995 -1.891 39.170 32.995 -1.891 39.170 C60 VG3 34
VG3 C61 C61 C 0 1 N N N 33.553 -1.884 40.600 33.553 -1.884 40.600 C61 VG3 35
VG3 C64 C64 C 0 1 N N N 34.787 -2.779 40.776 34.787 -2.779 40.776 C64 VG3 36
VG3 C67 C67 C 0 1 N N N 35.316 -2.755 42.218 35.316 -2.755 42.218 C67 VG3 37
VG3 C70 C70 C 0 1 N N N 36.549 -3.650 42.402 36.549 -3.650 42.402 C70 VG3 38
VG3 O76 O76 O 0 1 N N N 30.530 -1.417 39.924 30.530 -1.417 39.924 O76 VG3 39
VG3 O77 O77 O 0 1 N N N 31.930 0.525 39.343 31.930 0.525 39.343 O77 VG3 40
VG3 H2 H2 H 0 1 N N N 28.550 0.980 34.058 28.550 0.980 34.058 H2 VG3 41
VG3 H3 H3 H 0 1 N N N 30.166 2.720 32.175 30.166 2.720 32.175 H3 VG3 42
VG3 H4 H4 H 0 1 N N N 27.385 3.079 33.345 27.385 3.079 33.345 H4 VG3 43
VG3 H5C1 1H5C H 0 0 N N N 27.503 1.386 31.624 27.503 1.386 31.624 H5C1 VG3 44
VG3 H5C2 2H5C H 0 0 N N N 28.693 2.176 30.472 28.693 2.176 30.472 H5C2 VG3 45
VG3 H19 H19 H 0 1 N N N 28.044 5.325 32.352 28.044 5.325 32.353 H19 VG3 46
VG3 H211 1H21 H 0 0 N N N 28.960 3.659 35.092 28.960 3.659 35.092 H211 VG3 47
VG3 H212 2H21 H 0 0 N N N 30.040 4.508 33.934 30.039 4.508 33.934 H212 VG3 48
VG3 H8 H8 H 0 1 N N N 29.817 -1.332 33.710 29.817 -1.332 33.710 H8 VG3 49
VG3 H12 H12 H 0 1 N N N 31.330 1.127 36.945 31.330 1.127 36.945 H12 VG3 50
VG3 H9 H9 H 0 1 N N N 29.860 -3.323 35.208 29.860 -3.323 35.208 H9 VG3 51
VG3 H10 H10 H 0 1 N N N 30.625 -3.097 37.570 30.625 -3.097 37.570 H10 VG3 52
VG3 H14 H14 H 0 1 N N N 27.365 -0.911 31.274 27.365 -0.911 31.274 H14 VG3 53
VG3 H18 H18 H 0 1 N N N 31.212 1.032 30.864 31.212 1.032 30.864 H18 VG3 54
VG3 H15 H15 H 0 1 N N N 28.435 -3.118 30.826 28.435 -3.118 30.826 H15 VG3 55
VG3 H16 H16 H 0 1 N N N 30.890 -3.252 30.399 30.890 -3.252 30.399 H16 VG3 56
VG3 H17 H17 H 0 1 N N N 32.277 -1.176 30.421 32.277 -1.176 30.421 H17 VG3 57
VG3 H20 H20 H 0 1 N N N 28.222 7.564 34.925 28.222 7.564 34.925 H20 VG3 58
VG3 H22 H22 H 0 1 N N N 27.598 5.310 35.131 27.598 5.310 35.131 H22 VG3 59
VG3 H241 1H24 H 0 0 N N N 30.624 6.473 36.257 30.624 6.473 36.257 H241 VG3 60
VG3 H242 2H24 H 0 0 N N N 29.228 7.362 36.956 29.228 7.362 36.956 H242 VG3 61
VG3 H243 3H24 H 0 0 N N N 29.133 5.584 36.718 29.133 5.584 36.718 H243 VG3 62
VG3 H601 1H60 H 0 0 N N N 32.714 -2.916 38.888 32.714 -2.917 38.889 H601 VG3 63
VG3 H602 2H60 H 0 0 N N N 33.760 -1.522 38.471 33.761 -1.522 38.471 H602 VG3 64
VG3 H39 H39 H 0 1 N N N 28.672 8.200 32.913 28.672 8.200 32.913 H39 VG3 65
VG3 H40 H40 H 0 1 N N N 31.383 7.779 31.729 31.383 7.779 31.729 H40 VG3 66
VG3 H431 1H43 H 0 0 N N N 29.994 10.489 32.174 29.994 10.489 32.174 H431 VG3 67
VG3 H432 2H43 H 0 0 N N N 31.477 9.908 33.010 31.477 9.908 33.010 H432 VG3 68
VG3 H471 1H47 H 0 0 N N N 29.440 7.242 30.294 29.440 7.242 30.294 H471 VG3 69
VG3 H472 2H47 H 0 0 N N N 28.805 8.921 30.535 28.805 8.921 30.535 H472 VG3 70
VG3 H441 1H44 H 0 0 N N N 31.978 11.472 31.052 31.978 11.472 31.052 H441 VG3 71
VG3 H442 2H44 H 0 0 N N N 32.707 9.811 30.862 32.707 9.811 30.862 H442 VG3 72
VG3 H451 1H45 H 0 0 N N N 30.231 10.935 29.463 30.231 10.934 29.463 H451 VG3 73
VG3 H452 2H45 H 0 0 N N N 31.826 10.468 28.725 31.826 10.468 28.725 H452 VG3 74
VG3 H461 1H46 H 0 0 N N N 29.951 8.785 28.368 29.951 8.785 28.368 H461 VG3 75
VG3 H462 2H46 H 0 0 N N N 31.440 8.134 29.184 31.440 8.134 29.184 H462 VG3 76
VG3 H611 1H61 H 0 0 N N N 33.838 -0.852 40.852 33.838 -0.852 40.852 H611 VG3 77
VG3 H612 2H61 H 0 0 N N N 32.766 -2.278 41.260 32.766 -2.278 41.260 H612 VG3 78
VG3 H641 1H64 H 0 0 N N N 34.511 -3.813 40.520 34.511 -3.813 40.521 H641 VG3 79
VG3 H642 2H64 H 0 0 N N N 35.580 -2.399 40.116 35.580 -2.399 40.116 H642 VG3 80
VG3 H671 1H67 H 0 0 N N N 35.594 -1.721 42.471 35.594 -1.721 42.471 H671 VG3 81
VG3 H672 2H67 H 0 0 N N N 34.521 -3.136 42.876 34.521 -3.136 42.876 H672 VG3 82
VG3 H701 1H70 H 0 0 N N N 36.997 -3.864 41.420 36.997 -3.864 41.421 H701 VG3 83
VG3 H702 2H70 H 0 0 N N N 37.285 -3.134 43.036 37.285 -3.134 43.036 H702 VG3 84
VG3 H703 3H70 H 0 0 N N N 36.249 -4.593 42.881 36.249 -4.593 42.881 H703 VG3 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VG3 C1 N2 SING N N 1
VG3 C1 O6 DOUB N N 2
VG3 C1 C7 SING N N 3
VG3 N2 C3 SING N N 4
VG3 C3 C4 SING N N 5
VG3 C3 C5 SING N N 6
VG3 C4 O19 SING N N 7
VG3 C4 C21 SING N N 8
VG3 C5 C13 SING N N 9
VG3 C7 C8 SING Y N 10
VG3 C7 C12 DOUB Y N 11
VG3 C8 C9 DOUB Y N 12
VG3 C9 C10 SING Y N 13
VG3 C10 C11 DOUB Y N 14
VG3 C11 C12 SING Y N 15
VG3 C11 S23 SING N N 16
VG3 C13 C14 SING Y N 17
VG3 C13 C18 DOUB Y N 18
VG3 C14 C15 DOUB Y N 19
VG3 C15 C16 SING Y N 20
VG3 C16 C17 DOUB Y N 21
VG3 C17 C18 SING Y N 22
VG3 C20 N22 SING N N 23
VG3 C20 C24 SING N N 24
VG3 C20 C38 SING N N 25
VG3 C21 N22 SING N N 26
VG3 S23 C60 SING N N 27
VG3 S23 O76 DOUB N N 28
VG3 S23 O77 DOUB N N 29
VG3 C38 N39 SING N N 30
VG3 C38 O41 DOUB N N 31
VG3 N39 C40 SING N N 32
VG3 C40 C43 SING N N 33
VG3 C40 C47 SING N N 34
VG3 C43 C44 SING N N 35
VG3 C44 C45 SING N N 36
VG3 C45 C46 SING N N 37
VG3 C46 C47 SING N N 38
VG3 C60 C61 SING N N 39
VG3 C61 C64 SING N N 40
VG3 C64 C67 SING N N 41
VG3 C67 C70 SING N N 42
VG3 N2 H2 SING N N 43
VG3 C3 H3 SING N N 44
VG3 C4 H4 SING N N 45
VG3 C5 H5C1 SING N N 46
VG3 C5 H5C2 SING N N 47
VG3 O19 H19 SING N N 48
VG3 C21 H211 SING N N 49
VG3 C21 H212 SING N N 50
VG3 C8 H8 SING N N 51
VG3 C12 H12 SING N N 52
VG3 C9 H9 SING N N 53
VG3 C10 H10 SING N N 54
VG3 C14 H14 SING N N 55
VG3 C18 H18 SING N N 56
VG3 C15 H15 SING N N 57
VG3 C16 H16 SING N N 58
VG3 C17 H17 SING N N 59
VG3 C20 H20 SING N N 60
VG3 N22 H22 SING N N 61
VG3 C24 H241 SING N N 62
VG3 C24 H242 SING N N 63
VG3 C24 H243 SING N N 64
VG3 C60 H601 SING N N 65
VG3 C60 H602 SING N N 66
VG3 N39 H39 SING N N 67
VG3 C40 H40 SING N N 68
VG3 C43 H431 SING N N 69
VG3 C43 H432 SING N N 70
VG3 C47 H471 SING N N 71
VG3 C47 H472 SING N N 72
VG3 C44 H441 SING N N 73
VG3 C44 H442 SING N N 74
VG3 C45 H451 SING N N 75
VG3 C45 H452 SING N N 76
VG3 C46 H461 SING N N 77
VG3 C46 H462 SING N N 78
VG3 C61 H611 SING N N 79
VG3 C61 H612 SING N N 80
VG3 C64 H641 SING N N 81
VG3 C64 H642 SING N N 82
VG3 C67 H671 SING N N 83
VG3 C67 H672 SING N N 84
VG3 C70 H701 SING N N 85
VG3 C70 H702 SING N N 86
VG3 C70 H703 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VG3 SMILES ACDLabs 10.04 "O=C(NC1CCCCC1)C(NCC(O)C(NC(=O)c2cccc(c2)S(=O)(=O)CCCCC)Cc3ccccc3)C"
VG3 SMILES_CANONICAL CACTVS 3.341 "CCCCC[S](=O)(=O)c1cccc(c1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)CN[C@@H](C)C(=O)NC3CCCCC3"
VG3 SMILES CACTVS 3.341 "CCCCC[S](=O)(=O)c1cccc(c1)C(=O)N[CH](Cc2ccccc2)[CH](O)CN[CH](C)C(=O)NC3CCCCC3"
VG3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCS(=O)(=O)c1cccc(c1)C(=O)N[C@@H](Cc2ccccc2)[C@@H](CN[C@@H](C)C(=O)NC3CCCCC3)O"
VG3 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCS(=O)(=O)c1cccc(c1)C(=O)NC(Cc2ccccc2)C(CNC(C)C(=O)NC3CCCCC3)O"
VG3 InChI InChI 1.03
"InChI=1S/C31H45N3O5S/c1-3-4-11-19-40(38,39)27-18-12-15-25(21-27)31(37)34-28(20-24-13-7-5-8-14-24)29(35)22-32-23(2)30(36)33-26-16-9-6-10-17-26/h5,7-8,12-15,18,21,23,26,28-29,32,35H,3-4,6,9-11,16-17,19-20,22H2,1-2H3,(H,33,36)(H,34,37)/t23-,28-,29+/m0/s1"
VG3 InChIKey InChI 1.03 FBMGVFBNGKNQCB-WTWMYVDVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VG3 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(pentylsulfonyl)benzamide"
VG3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3R)-4-[[(2S)-1-(cyclohexylamino)-1-oxo-propan-2-yl]amino]-3-hydroxy-1-phenyl-butan-2-yl]-3-pentylsulfonyl-benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VG3 "Create component" 2007-12-06 EBI
VG3 "Modify aromatic_flag" 2011-06-04 RCSB
VG3 "Modify descriptor" 2011-06-04 RCSB
#