data_VG4
#
_chem_comp.id VG4
_chem_comp.name "N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(2-oxo-2,3-dihydro-1H-pyrrol-1-yl)-5-propoxybenzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C33 H44 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 576.726
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VG4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VIZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VG4 C1 C1 C 0 1 Y N N 31.510 -0.909 37.285 31.510 -0.909 37.285 C1 VG4 1
VG4 C2 C2 C 0 1 Y N N 31.394 0.235 36.443 31.394 0.235 36.443 C2 VG4 2
VG4 C3 C3 C 0 1 Y N N 30.808 0.123 35.165 30.808 0.123 35.165 C3 VG4 3
VG4 C4 C4 C 0 1 Y N N 30.337 -1.148 34.726 30.337 -1.148 34.726 C4 VG4 4
VG4 C5 C5 C 0 1 Y N N 30.441 -2.307 35.558 30.441 -2.307 35.558 C5 VG4 5
VG4 C6 C6 C 0 1 Y N N 31.032 -2.162 36.828 31.032 -2.162 36.828 C6 VG4 6
VG4 C7 C7 C 0 1 N N N 30.673 1.252 34.237 30.673 1.252 34.237 C7 VG4 7
VG4 N8 N8 N 0 1 N N N 29.494 1.346 33.551 29.494 1.346 33.551 N8 VG4 8
VG4 O9 O9 O 0 1 N N N 31.589 2.058 34.046 31.589 2.058 34.046 O9 VG4 9
VG4 C10 C10 C 0 1 N N S 29.267 2.396 32.535 29.267 2.396 32.535 C10 VG4 10
VG4 C11 C11 C 0 1 N N N 28.655 1.726 31.273 28.655 1.726 31.273 C11 VG4 11
VG4 C12 C12 C 0 1 N N R 28.370 3.525 33.085 28.370 3.525 33.085 C12 VG4 12
VG4 O13 O13 O 0 1 N N N 28.091 4.457 32.056 28.091 4.457 32.056 O13 VG4 13
VG4 C14 C14 C 0 1 Y N N 29.265 0.372 30.931 29.265 0.372 30.931 C14 VG4 14
VG4 C15 C15 C 0 1 N N N 29.050 4.282 34.230 29.050 4.282 34.230 C15 VG4 15
VG4 N16 N16 N 0 1 N N N 28.379 5.552 34.468 28.379 5.552 34.468 N16 VG4 16
VG4 C17 C17 C 0 1 N N S 29.077 6.747 34.973 29.077 6.747 34.973 C17 VG4 17
VG4 C18 C18 C 0 1 N N N 30.152 7.140 33.937 30.152 7.140 33.937 C18 VG4 18
VG4 N19 N19 N 0 1 N N N 29.665 7.881 32.927 29.665 7.881 32.927 N19 VG4 19
VG4 O20 O20 O 0 1 N N N 31.323 6.780 34.055 31.323 6.780 34.055 O20 VG4 20
VG4 C21 C21 C 0 1 N N N 30.504 8.353 31.825 30.504 8.353 31.825 C21 VG4 21
VG4 C22 C22 C 0 1 N N N 29.721 6.461 36.350 29.721 6.461 36.350 C22 VG4 22
VG4 C23 C23 C 0 1 N N N 30.980 9.800 32.103 30.980 9.800 32.103 C23 VG4 23
VG4 C24 C24 C 0 1 N N N 31.863 10.314 30.939 31.863 10.314 30.939 C24 VG4 24
VG4 C25 C25 C 0 1 N N N 31.130 10.212 29.571 31.130 10.212 29.571 C25 VG4 25
VG4 C26 C26 C 0 1 N N N 30.581 8.785 29.312 30.581 8.785 29.312 C26 VG4 26
VG4 C27 C27 C 0 1 N N N 29.713 8.284 30.493 29.713 8.284 30.493 C27 VG4 27
VG4 C56 C56 C 0 1 Y N N 28.414 -0.739 30.709 28.414 -0.739 30.709 C56 VG4 28
VG4 C57 C57 C 0 1 Y N N 28.953 -2.014 30.391 28.953 -2.014 30.391 C57 VG4 29
VG4 C58 C58 C 0 1 Y N N 30.356 -2.190 30.293 30.356 -2.190 30.293 C58 VG4 30
VG4 C59 C59 C 0 1 Y N N 31.218 -1.089 30.510 31.218 -1.089 30.510 C59 VG4 31
VG4 C60 C60 C 0 1 Y N N 30.675 0.183 30.825 30.675 0.183 30.825 C60 VG4 32
VG4 O66 O66 O 0 1 N N N 29.956 -3.553 35.073 29.956 -3.553 35.073 O66 VG4 33
VG4 C67 C67 C 0 1 N N N 29.092 -3.581 33.934 29.092 -3.581 33.934 C67 VG4 34
VG4 C68 C68 C 0 1 N N N 27.640 -3.475 34.408 27.640 -3.475 34.408 C68 VG4 35
VG4 C71 C71 C 0 1 N N N 26.663 -3.470 33.243 26.663 -3.470 33.243 C71 VG4 36
VG4 N77 N77 N 0 1 N N N 32.090 -0.813 38.526 32.090 -0.813 38.526 N77 VG4 37
VG4 C78 C78 C 0 1 N N N 33.444 -0.271 38.668 33.444 -0.271 38.668 C78 VG4 38
VG4 C79 C79 C 0 1 N N N 33.754 -0.329 40.153 33.754 -0.329 40.153 C79 VG4 39
VG4 C80 C80 C 0 1 N N N 32.545 -0.963 40.839 32.545 -0.963 40.839 C80 VG4 40
VG4 C81 C81 C 0 1 N N N 31.547 -1.208 39.711 31.547 -1.208 39.711 C81 VG4 41
VG4 O88 O88 O 0 1 N N N 30.439 -1.699 39.899 30.439 -1.699 39.899 O88 VG4 42
VG4 H2 H2 H 0 1 N N N 31.757 1.193 36.785 31.757 1.193 36.785 H2 VG4 43
VG4 H6 H6 H 0 1 N N N 31.123 -3.027 37.469 31.123 -3.026 37.469 H6 VG4 44
VG4 H4 H4 H 0 1 N N N 29.893 -1.238 33.746 29.893 -1.238 33.746 H4 VG4 45
VG4 H8 H8 H 0 1 N N N 28.766 0.687 33.741 28.766 0.687 33.741 H8 VG4 46
VG4 H10 H10 H 0 1 N N N 30.221 2.872 32.266 30.222 2.872 32.266 H10 VG4 47
VG4 H111 1H11 H 0 0 N N N 27.580 1.578 31.455 27.580 1.578 31.455 H111 VG4 48
VG4 H112 2H11 H 0 0 N N N 28.861 2.394 30.424 28.861 2.394 30.424 H112 VG4 49
VG4 H12 H12 H 0 1 N N N 27.448 3.056 33.459 27.448 3.056 33.459 H12 VG4 50
VG4 H13 H13 H 0 1 N N N 28.029 5.329 32.427 28.028 5.329 32.427 H13 VG4 51
VG4 H151 1H15 H 0 0 N N N 29.003 3.672 35.144 29.003 3.672 35.144 H151 VG4 52
VG4 H152 2H15 H 0 0 N N N 30.098 4.477 33.957 30.097 4.477 33.957 H152 VG4 53
VG4 H56 H56 H 0 1 N N N 27.344 -0.615 30.782 27.344 -0.615 30.782 H56 VG4 54
VG4 H60 H60 H 0 1 N N N 31.338 1.020 30.987 31.338 1.020 30.987 H60 VG4 55
VG4 H16 H16 H 0 1 N N N 28.007 5.822 33.580 28.007 5.822 33.580 H16 VG4 56
VG4 H17 H17 H 0 1 N N N 28.365 7.574 35.111 28.365 7.574 35.111 H17 VG4 57
VG4 H221 1H22 H 0 0 N N N 30.813 6.393 36.238 30.813 6.393 36.238 H221 VG4 58
VG4 H222 2H22 H 0 0 N N N 29.474 7.276 37.046 29.474 7.276 37.046 H222 VG4 59
VG4 H223 3H22 H 0 0 N N N 29.334 5.510 36.745 29.334 5.510 36.745 H223 VG4 60
VG4 H19 H19 H 0 1 N N N 28.694 8.118 32.929 28.694 8.118 32.929 H19 VG4 61
VG4 H21 H21 H 0 1 N N N 31.389 7.706 31.741 31.389 7.706 31.741 H21 VG4 62
VG4 H231 1H23 H 0 0 N N N 30.102 10.455 32.206 30.102 10.455 32.206 H231 VG4 63
VG4 H232 2H23 H 0 0 N N N 31.572 9.808 33.030 31.572 9.808 33.030 H232 VG4 64
VG4 H271 1H27 H 0 0 N N N 29.418 7.241 30.304 29.418 7.241 30.304 H271 VG4 65
VG4 H272 2H27 H 0 0 N N N 28.824 8.927 30.576 28.824 8.927 30.576 H272 VG4 66
VG4 H241 1H24 H 0 0 N N N 32.116 11.368 31.126 32.116 11.368 31.126 H241 VG4 67
VG4 H242 2H24 H 0 0 N N N 32.767 9.689 30.892 32.767 9.689 30.892 H242 VG4 68
VG4 H251 1H25 H 0 0 N N N 30.287 10.919 29.570 30.287 10.919 29.570 H251 VG4 69
VG4 H252 2H25 H 0 0 N N N 31.854 10.449 28.777 31.854 10.449 28.777 H252 VG4 70
VG4 H261 1H26 H 0 0 N N N 29.963 8.803 28.402 29.963 8.803 28.402 H261 VG4 71
VG4 H262 2H26 H 0 0 N N N 31.436 8.102 29.198 31.436 8.102 29.198 H262 VG4 72
VG4 H57 H57 H 0 1 N N N 28.292 -2.852 30.223 28.292 -2.852 30.223 H57 VG4 73
VG4 H58 H58 H 0 1 N N N 30.765 -3.160 30.054 30.765 -3.160 30.054 H58 VG4 74
VG4 H59 H59 H 0 1 N N N 32.288 -1.217 30.436 32.288 -1.217 30.436 H59 VG4 75
VG4 H671 1H67 H 0 0 N N N 29.327 -2.735 33.271 29.327 -2.736 33.271 H671 VG4 76
VG4 H672 2H67 H 0 0 N N N 29.235 -4.522 33.382 29.235 -4.522 33.382 H672 VG4 77
VG4 H681 1H68 H 0 0 N N N 27.416 -4.338 35.052 27.416 -4.338 35.052 H681 VG4 78
VG4 H682 2H68 H 0 0 N N N 27.526 -2.527 34.954 27.526 -2.527 34.954 H682 VG4 79
VG4 H711 1H71 H 0 0 N N N 25.633 -3.469 33.628 25.633 -3.469 33.628 H711 VG4 80
VG4 H712 2H71 H 0 0 N N N 26.827 -2.571 32.631 26.827 -2.571 32.631 H712 VG4 81
VG4 H713 3H71 H 0 0 N N N 26.823 -4.367 32.627 26.823 -4.367 32.627 H713 VG4 82
VG4 H78 H78 H 0 1 N N N 34.087 0.094 37.881 34.087 0.094 37.881 H78 VG4 83
VG4 H79 H79 H 0 1 N N N 34.658 0.013 40.634 34.659 0.013 40.634 H79 VG4 84
VG4 H801 1H80 H 0 0 N N N 32.820 -1.905 41.336 32.820 -1.905 41.336 H801 VG4 85
VG4 H802 2H80 H 0 0 N N N 32.130 -0.318 41.628 32.130 -0.318 41.628 H802 VG4 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VG4 C1 C2 SING Y N 1
VG4 C1 C6 DOUB Y N 2
VG4 C1 N77 SING N N 3
VG4 C2 C3 DOUB Y N 4
VG4 C3 C4 SING Y N 5
VG4 C3 C7 SING N N 6
VG4 C4 C5 DOUB Y N 7
VG4 C5 C6 SING Y N 8
VG4 C5 O66 SING N N 9
VG4 C7 N8 SING N N 10
VG4 C7 O9 DOUB N N 11
VG4 N8 C10 SING N N 12
VG4 C10 C11 SING N N 13
VG4 C10 C12 SING N N 14
VG4 C11 C14 SING N N 15
VG4 C12 O13 SING N N 16
VG4 C12 C15 SING N N 17
VG4 C14 C56 SING Y N 18
VG4 C14 C60 DOUB Y N 19
VG4 C15 N16 SING N N 20
VG4 N16 C17 SING N N 21
VG4 C17 C18 SING N N 22
VG4 C17 C22 SING N N 23
VG4 C18 N19 SING N N 24
VG4 C18 O20 DOUB N N 25
VG4 N19 C21 SING N N 26
VG4 C21 C23 SING N N 27
VG4 C21 C27 SING N N 28
VG4 C23 C24 SING N N 29
VG4 C24 C25 SING N N 30
VG4 C25 C26 SING N N 31
VG4 C26 C27 SING N N 32
VG4 C56 C57 DOUB Y N 33
VG4 C57 C58 SING Y N 34
VG4 C58 C59 DOUB Y N 35
VG4 C59 C60 SING Y N 36
VG4 O66 C67 SING N N 37
VG4 C67 C68 SING N N 38
VG4 C68 C71 SING N N 39
VG4 N77 C78 SING N N 40
VG4 N77 C81 SING N N 41
VG4 C78 C79 DOUB N N 42
VG4 C79 C80 SING N N 43
VG4 C80 C81 SING N N 44
VG4 C81 O88 DOUB N N 45
VG4 C2 H2 SING N N 46
VG4 C6 H6 SING N N 47
VG4 C4 H4 SING N N 48
VG4 N8 H8 SING N N 49
VG4 C10 H10 SING N N 50
VG4 C11 H111 SING N N 51
VG4 C11 H112 SING N N 52
VG4 C12 H12 SING N N 53
VG4 O13 H13 SING N N 54
VG4 C15 H151 SING N N 55
VG4 C15 H152 SING N N 56
VG4 C56 H56 SING N N 57
VG4 C60 H60 SING N N 58
VG4 N16 H16 SING N N 59
VG4 C17 H17 SING N N 60
VG4 C22 H221 SING N N 61
VG4 C22 H222 SING N N 62
VG4 C22 H223 SING N N 63
VG4 N19 H19 SING N N 64
VG4 C21 H21 SING N N 65
VG4 C23 H231 SING N N 66
VG4 C23 H232 SING N N 67
VG4 C27 H271 SING N N 68
VG4 C27 H272 SING N N 69
VG4 C24 H241 SING N N 70
VG4 C24 H242 SING N N 71
VG4 C25 H251 SING N N 72
VG4 C25 H252 SING N N 73
VG4 C26 H261 SING N N 74
VG4 C26 H262 SING N N 75
VG4 C57 H57 SING N N 76
VG4 C58 H58 SING N N 77
VG4 C59 H59 SING N N 78
VG4 C67 H671 SING N N 79
VG4 C67 H672 SING N N 80
VG4 C68 H681 SING N N 81
VG4 C68 H682 SING N N 82
VG4 C71 H711 SING N N 83
VG4 C71 H712 SING N N 84
VG4 C71 H713 SING N N 85
VG4 C78 H78 SING N N 86
VG4 C79 H79 SING N N 87
VG4 C80 H801 SING N N 88
VG4 C80 H802 SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VG4 SMILES ACDLabs 10.04 "O=C(NC1CCCCC1)C(NCC(O)C(NC(=O)c2cc(OCCC)cc(c2)N3C=CCC3=O)Cc4ccccc4)C"
VG4 SMILES_CANONICAL CACTVS 3.341 "CCCOc1cc(cc(c1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)CN[C@@H](C)C(=O)NC3CCCCC3)N4C=CCC4=O"
VG4 SMILES CACTVS 3.341 "CCCOc1cc(cc(c1)C(=O)N[CH](Cc2ccccc2)[CH](O)CN[CH](C)C(=O)NC3CCCCC3)N4C=CCC4=O"
VG4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCOc1cc(cc(c1)N2C=CCC2=O)C(=O)N[C@@H](Cc3ccccc3)[C@@H](CN[C@@H](C)C(=O)NC4CCCCC4)O"
VG4 SMILES "OpenEye OEToolkits" 1.5.0 "CCCOc1cc(cc(c1)N2C=CCC2=O)C(=O)NC(Cc3ccccc3)C(CNC(C)C(=O)NC4CCCCC4)O"
VG4 InChI InChI 1.03
;InChI=1S/C33H44N4O5/c1-3-17-42-28-20-25(19-27(21-28)37-16-10-15-31(37)39)33(41)36-29(18-24-11-6-4-7-12-24)30(38)22-34-23(2)32(40)35-26-13-8-5-9-14-26/h4,6-7,10-12,16,19-21,23,26,29-30,34,38H,3,5,8-9,13-15,17-18,22H2,1-2H3,(H,35,40)(H,36,41)/t23-,29-,30+/m0/s1
;
VG4 InChIKey InChI 1.03 OCMGZBXBWVXWRJ-KEPSJGTLSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VG4 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(2-oxo-2,3-dihydro-1H-pyrrol-1-yl)-5-propoxybenzamide"
VG4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3R)-4-[[(2S)-1-(cyclohexylamino)-1-oxo-propan-2-yl]amino]-3-hydroxy-1-phenyl-butan-2-yl]-3-(2-oxo-3H-pyrrol-1-yl)-5-propoxy-benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VG4 "Create component" 2007-12-06 EBI
VG4 "Modify aromatic_flag" 2011-06-04 RCSB
VG4 "Modify descriptor" 2011-06-04 RCSB
#