data_VG5
#
_chem_comp.id VG5
_chem_comp.name " N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C32 H45 N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 563.731
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VG5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VJ6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VG5 C1 C1 C 0 1 Y N N 31.271 -0.808 37.392 5.604 0.732 -0.792 C1 VG5 1
VG5 C2 C2 C 0 1 Y N N 31.165 0.360 36.514 4.456 -0.045 -0.824 C2 VG5 2
VG5 C3 C3 C 0 1 Y N N 30.539 0.224 35.252 3.316 0.370 -0.135 C3 VG5 3
VG5 C4 C4 C 0 1 Y N N 29.999 -1.080 34.826 3.336 1.565 0.584 C4 VG5 4
VG5 C5 C5 C 0 1 Y N N 30.094 -2.249 35.691 4.488 2.337 0.611 C5 VG5 5
VG5 C6 C6 C 0 1 Y N N 30.728 -2.086 36.950 5.621 1.921 -0.076 C6 VG5 6
VG5 C7 C7 C 0 1 N N N 30.412 1.327 34.322 2.089 -0.456 -0.167 C7 VG5 7
VG5 N8 N8 N 0 1 N N N 29.216 1.425 33.665 0.989 -0.054 0.499 N8 VG5 8
VG5 O9 O9 O 0 1 N N N 31.342 2.111 34.113 2.074 -1.497 -0.794 O9 VG5 9
VG5 C10 C10 C 0 1 N N S 28.919 2.447 32.627 -0.226 -0.871 0.467 C10 VG5 10
VG5 C11 C11 C 0 1 N N N 28.230 1.673 31.452 -0.144 -1.949 1.549 C11 VG5 11
VG5 C12 C12 C 0 1 N N R 28.028 3.592 33.159 -1.445 0.017 0.723 C12 VG5 12
VG5 O13 O13 O 0 1 N N N 27.776 4.517 32.105 -1.380 0.545 2.049 O13 VG5 13
VG5 C14 C14 C 0 1 Y N N 28.912 0.346 31.130 0.983 -2.897 1.230 C14 VG5 14
VG5 C15 C15 C 0 1 N N N 28.721 4.358 34.296 -2.722 -0.812 0.567 C15 VG5 15
VG5 N16 N16 N 0 1 N N N 28.083 5.659 34.545 -3.894 0.065 0.695 N16 VG5 16
VG5 C17 C17 C 0 1 N N S 28.817 6.838 35.072 -5.140 -0.698 0.550 C17 VG5 17
VG5 C18 C18 C 0 1 N N N 29.878 7.262 34.013 -6.239 0.219 0.076 C18 VG5 18
VG5 N19 N19 N 0 1 N N N 29.341 7.911 32.959 -7.480 -0.266 -0.128 N19 VG5 19
VG5 O20 O20 O 0 1 N N N 31.079 7.011 34.154 -6.006 1.393 -0.121 O20 VG5 20
VG5 C21 C21 C 0 1 N N N 30.151 8.402 31.836 -8.547 0.626 -0.588 C21 VG5 21
VG5 C22 C22 C 0 1 N N N 29.489 6.502 36.434 -5.528 -1.304 1.900 C22 VG5 22
VG5 C23 C23 C 0 1 N N N 30.610 9.872 32.102 -9.903 0.061 -0.161 C23 VG5 23
VG5 C24 C24 C 0 1 N N N 31.468 10.401 30.908 -11.018 0.992 -0.641 C24 VG5 24
VG5 C25 C25 C 0 1 N N N 30.714 10.268 29.535 -10.969 1.102 -2.167 C25 VG5 25
VG5 C26 C26 C 0 1 N N N 30.152 8.827 29.295 -9.613 1.667 -2.594 C26 VG5 26
VG5 C27 C27 C 0 1 N N N 29.330 8.310 30.515 -8.498 0.736 -2.113 C27 VG5 27
VG5 C56 C56 C 0 1 Y N N 28.120 -0.847 31.053 2.255 -2.646 1.709 C56 VG5 28
VG5 C57 C57 C 0 1 Y N N 28.740 -2.113 30.758 3.289 -3.515 1.416 C57 VG5 29
VG5 C58 C58 C 0 1 Y N N 30.159 -2.194 30.543 3.051 -4.637 0.643 C58 VG5 30
VG5 C59 C59 C 0 1 Y N N 30.964 -1.008 30.618 1.779 -4.889 0.165 C59 VG5 31
VG5 C60 C60 C 0 1 Y N N 30.346 0.254 30.908 0.744 -4.021 0.462 C60 VG5 32
VG5 N1 N1 N 0 1 N N N 29.579 -3.536 35.311 4.508 3.534 1.331 N1 VG5 33
VG5 C67 C67 C 0 1 N N N 29.022 -3.823 34.000 3.314 3.974 2.056 C67 VG5 34
VG5 C68 C68 C 0 1 N N N 27.487 -3.768 34.076 3.602 5.305 2.754 C68 VG5 35
VG5 N77 N77 N 0 1 N N N 31.874 -0.704 38.612 6.750 0.313 -1.478 N77 VG5 36
VG5 C78 C78 C 0 1 N N N 33.215 -0.118 38.718 6.883 -0.981 -2.157 C78 VG5 37
VG5 C79 C79 C 0 1 N N N 33.564 -0.169 40.197 8.399 -1.178 -2.376 C79 VG5 38
VG5 C80 C80 C 0 1 N N N 32.380 -0.800 40.922 8.908 0.282 -2.394 C80 VG5 39
VG5 C81 C81 C 0 1 N N N 31.366 -1.100 39.813 7.869 1.048 -1.605 C81 VG5 40
VG5 O88 O88 O 0 1 N N N 30.278 -1.622 40.032 8.024 2.162 -1.151 O88 VG5 41
VG5 H2 H2 H 0 1 N N N 31.561 1.315 36.827 4.444 -0.970 -1.382 H2 VG5 42
VG5 H6 H6 H 0 1 N N N 30.811 -2.941 37.605 6.517 2.523 -0.053 H6 VG5 43
VG5 H4 H4 H 0 1 N N N 29.526 -1.170 33.859 2.455 1.890 1.118 H4 VG5 44
VG5 H1 H1 H 0 1 N N N 30.352 -4.163 35.407 5.314 4.075 1.350 H1 VG5 45
VG5 H8 H8 H 0 1 N N N 28.498 0.769 33.897 1.002 0.777 0.999 H8 VG5 46
VG5 H10 H10 H 0 1 N N N 29.842 2.945 32.296 -0.320 -1.344 -0.511 H10 VG5 47
VG5 H111 H111 H 0 0 N N N 27.189 1.465 31.739 0.039 -1.480 2.516 H111 VG5 48
VG5 H112 H112 H 0 0 N N N 28.298 2.306 30.555 -1.083 -2.501 1.585 H112 VG5 49
VG5 H12 H12 H 0 1 N N N 27.096 3.146 33.536 -1.455 0.837 0.006 H12 VG5 50
VG5 H13 H13 H 0 1 N N N 27.720 5.396 32.461 -1.368 -0.130 2.741 H13 VG5 51
VG5 H151 H151 H 0 0 N N N 28.663 3.755 35.214 -2.729 -1.287 -0.414 H151 VG5 52
VG5 H152 H152 H 0 0 N N N 29.766 4.538 34.002 -2.755 -1.578 1.342 H152 VG5 53
VG5 H56 H56 H 0 1 N N N 27.054 -0.796 31.217 2.441 -1.770 2.313 H56 VG5 54
VG5 H60 H60 H 0 1 N N N 30.953 1.146 30.962 -0.251 -4.220 0.091 H60 VG5 55
VG5 H16 H16 H 0 1 N N N 27.727 5.949 33.657 -3.876 0.566 1.570 H16 VG5 56
VG5 H17 H17 H 0 1 N N N 28.119 7.669 35.251 -4.995 -1.497 -0.178 H17 VG5 57
VG5 H221 H221 H 0 0 N N N 30.578 6.423 36.297 -5.673 -0.505 2.628 H221 VG5 58
VG5 H222 H222 H 0 0 N N N 29.268 7.300 37.158 -6.453 -1.870 1.793 H222 VG5 59
VG5 H223 H223 H 0 0 N N N 29.097 5.546 36.810 -4.734 -1.967 2.243 H223 VG5 60
VG5 H19 H19 H 0 1 N N N 28.353 8.064 32.942 -7.666 -1.204 0.030 H19 VG5 61
VG5 H21 H21 H 0 1 N N N 31.049 7.775 31.737 -8.411 1.614 -0.148 H21 VG5 62
VG5 H231 H231 H 0 0 N N N 29.723 10.511 32.220 -10.040 -0.927 -0.601 H231 VG5 63
VG5 H232 H232 H 0 0 N N N 31.220 9.895 33.017 -9.939 -0.018 0.926 H232 VG5 64
VG5 H271 H271 H 0 0 N N N 29.057 7.259 30.339 -7.532 1.139 -2.417 H271 VG5 65
VG5 H272 H272 H 0 0 N N N 28.433 8.938 30.620 -8.635 -0.252 -2.553 H272 VG5 66
VG5 H241 H241 H 0 0 N N N 31.696 11.463 31.082 -11.984 0.589 -0.337 H241 VG5 67
VG5 H242 H242 H 0 0 N N N 32.385 9.796 30.853 -10.882 1.980 -0.201 H242 VG5 68
VG5 H251 H251 H 0 0 N N N 29.872 10.975 29.531 -11.106 0.114 -2.607 H251 VG5 69
VG5 H252 H252 H 0 0 N N N 31.436 10.484 28.734 -11.763 1.765 -2.509 H252 VG5 70
VG5 H261 H261 H 0 0 N N N 29.496 8.848 28.412 -9.578 1.746 -3.680 H261 VG5 71
VG5 H262 H262 H 0 0 N N N 31.005 8.149 29.146 -9.476 2.655 -2.153 H262 VG5 72
VG5 H57 H57 H 0 1 N N N 28.136 -3.006 30.698 4.283 -3.318 1.790 H57 VG5 73
VG5 H58 H58 H 0 1 N N N 30.619 -3.147 30.325 3.859 -5.316 0.414 H58 VG5 74
VG5 H59 H59 H 0 1 N N N 32.030 -1.065 30.457 1.592 -5.765 -0.439 H59 VG5 75
VG5 H671 H671 H 0 0 N N N 29.381 -3.076 33.277 2.490 4.103 1.354 H671 VG5 76
VG5 H672 H672 H 0 0 N N N 29.339 -4.826 33.677 3.044 3.225 2.799 H672 VG5 77
VG5 H681 H681 H 0 0 N N N 27.172 -3.755 35.130 3.872 6.054 2.010 H681 VG5 78
VG5 H682 H682 H 0 0 N N N 27.128 -2.857 33.575 2.713 5.632 3.293 H682 VG5 79
VG5 H683 H683 H 0 0 N N N 27.064 -4.653 33.578 4.426 5.176 3.456 H683 VG5 80
VG5 H78 H78 H 0 1 N N N 33.941 -0.693 38.125 6.486 -1.778 -1.528 H78 VG5 81
VG5 H79 H79 H 0 1 N N N 34.470 -0.773 40.353 8.843 -1.735 -1.551 H79 VG5 82
VG5 H801 H801 H 0 0 N N N 32.679 -1.720 41.446 9.884 0.352 -1.914 H801 VG5 83
VG5 H802 H802 H 0 0 N N N 31.966 -0.138 41.696 8.956 0.656 -3.417 H802 VG5 84
VG5 H7A H7A H 0 1 N N N 33.241 0.911 38.329 6.363 -0.960 -3.114 H7A VG5 85
VG5 H7B H7B H 0 1 N N N 33.762 0.841 40.584 8.595 -1.671 -3.328 H7B VG5 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VG5 C1 C2 SING Y N 1
VG5 C1 C6 DOUB Y N 2
VG5 C1 N77 SING N N 3
VG5 C2 C3 DOUB Y N 4
VG5 C3 C4 SING Y N 5
VG5 C3 C7 SING N N 6
VG5 C4 C5 DOUB Y N 7
VG5 C5 C6 SING Y N 8
VG5 C5 N1 SING N N 9
VG5 C7 N8 SING N N 10
VG5 C7 O9 DOUB N N 11
VG5 N8 C10 SING N N 12
VG5 C10 C11 SING N N 13
VG5 C10 C12 SING N N 14
VG5 C11 C14 SING N N 15
VG5 C12 O13 SING N N 16
VG5 C12 C15 SING N N 17
VG5 C14 C56 SING Y N 18
VG5 C14 C60 DOUB Y N 19
VG5 C15 N16 SING N N 20
VG5 N16 C17 SING N N 21
VG5 C17 C18 SING N N 22
VG5 C17 C22 SING N N 23
VG5 C18 N19 SING N N 24
VG5 C18 O20 DOUB N N 25
VG5 N19 C21 SING N N 26
VG5 C21 C23 SING N N 27
VG5 C21 C27 SING N N 28
VG5 C23 C24 SING N N 29
VG5 C24 C25 SING N N 30
VG5 C25 C26 SING N N 31
VG5 C26 C27 SING N N 32
VG5 C56 C57 DOUB Y N 33
VG5 C57 C58 SING Y N 34
VG5 C58 C59 DOUB Y N 35
VG5 C59 C60 SING Y N 36
VG5 N1 C67 SING N N 37
VG5 C67 C68 SING N N 38
VG5 N77 C78 SING N N 39
VG5 N77 C81 SING N N 40
VG5 C78 C79 SING N N 41
VG5 C79 C80 SING N N 42
VG5 C80 C81 SING N N 43
VG5 C81 O88 DOUB N N 44
VG5 C2 H2 SING N N 45
VG5 C6 H6 SING N N 46
VG5 C4 H4 SING N N 47
VG5 N1 H1 SING N N 48
VG5 N8 H8 SING N N 49
VG5 C10 H10 SING N N 50
VG5 C11 H111 SING N N 51
VG5 C11 H112 SING N N 52
VG5 C12 H12 SING N N 53
VG5 O13 H13 SING N N 54
VG5 C15 H151 SING N N 55
VG5 C15 H152 SING N N 56
VG5 C56 H56 SING N N 57
VG5 C60 H60 SING N N 58
VG5 N16 H16 SING N N 59
VG5 C17 H17 SING N N 60
VG5 C22 H221 SING N N 61
VG5 C22 H222 SING N N 62
VG5 C22 H223 SING N N 63
VG5 N19 H19 SING N N 64
VG5 C21 H21 SING N N 65
VG5 C23 H231 SING N N 66
VG5 C23 H232 SING N N 67
VG5 C27 H271 SING N N 68
VG5 C27 H272 SING N N 69
VG5 C24 H241 SING N N 70
VG5 C24 H242 SING N N 71
VG5 C25 H251 SING N N 72
VG5 C25 H252 SING N N 73
VG5 C26 H261 SING N N 74
VG5 C26 H262 SING N N 75
VG5 C57 H57 SING N N 76
VG5 C58 H58 SING N N 77
VG5 C59 H59 SING N N 78
VG5 C67 H671 SING N N 79
VG5 C67 H672 SING N N 80
VG5 C68 H681 SING N N 81
VG5 C68 H682 SING N N 82
VG5 C68 H683 SING N N 83
VG5 C78 H78 SING N N 84
VG5 C78 H7A SING N N 85
VG5 C79 H79 SING N N 86
VG5 C79 H7B SING N N 87
VG5 C80 H801 SING N N 88
VG5 C80 H802 SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VG5 SMILES ACDLabs 10.04 "O=C(NC1CCCCC1)C(NCC(O)C(NC(=O)c2cc(cc(c2)N3C(=O)CCC3)NCC)Cc4ccccc4)C"
VG5 SMILES_CANONICAL CACTVS 3.352 "CCNc1cc(cc(c1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)CN[C@@H](C)C(=O)NC3CCCCC3)N4CCCC4=O"
VG5 SMILES CACTVS 3.352 "CCNc1cc(cc(c1)C(=O)N[CH](Cc2ccccc2)[CH](O)CN[CH](C)C(=O)NC3CCCCC3)N4CCCC4=O"
VG5 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CCNc1cc(cc(c1)N2CCCC2=O)C(=O)N[C@@H](Cc3ccccc3)[C@@H](CN[C@@H](C)C(=O)NC4CCCCC4)O"
VG5 SMILES "OpenEye OEToolkits" 1.6.1 "CCNc1cc(cc(c1)N2CCCC2=O)C(=O)NC(Cc3ccccc3)C(CNC(C)C(=O)NC4CCCCC4)O"
VG5 InChI InChI 1.03
"InChI=1S/C32H45N5O4/c1-3-33-26-18-24(19-27(20-26)37-16-10-15-30(37)39)32(41)36-28(17-23-11-6-4-7-12-23)29(38)21-34-22(2)31(40)35-25-13-8-5-9-14-25/h4,6-7,11-12,18-20,22,25,28-29,33-34,38H,3,5,8-10,13-17,21H2,1-2H3,(H,35,40)(H,36,41)/t22-,28-,29+/m0/s1"
VG5 InChIKey InChI 1.03 ARWMRRUIIHCDKG-PWUSVURUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VG5 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide"
VG5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[(2S,3R)-4-[[(2S)-1-(cyclohexylamino)-1-oxo-propan-2-yl]amino]-3-hydroxy-1-phenyl-butan-2-yl]-3-ethylamino-5-(2-oxopyrrolidin-1-yl)benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VG5 "Create component" 2007-12-06 EBI
VG5 "Modify aromatic_flag" 2011-06-04 RCSB
VG5 "Modify descriptor" 2011-06-04 RCSB
#