data_VG6
#
_chem_comp.id VG6
_chem_comp.name "N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C31 H35 F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.630
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VG6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VJ7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VG6 C1 C1 C 0 1 Y N N 29.876 -2.136 35.517 29.876 -2.136 35.517 C1 VG6 1
VG6 C2 C2 C 0 1 Y N N 29.832 -0.989 34.675 29.832 -0.989 34.675 C2 VG6 2
VG6 C3 C3 C 0 1 Y N N 30.382 0.251 35.105 30.382 0.251 35.105 C3 VG6 3
VG6 C4 C4 C 0 1 Y N N 30.983 0.337 36.382 30.983 0.337 36.382 C4 VG6 4
VG6 C5 C5 C 0 1 Y N N 31.037 -0.798 37.236 31.037 -0.798 37.236 C5 VG6 5
VG6 C6 C6 C 0 1 Y N N 30.478 -2.028 36.781 30.478 -2.028 36.781 C6 VG6 6
VG6 C7 C7 C 0 1 N N N 30.354 1.437 34.241 30.354 1.437 34.241 C7 VG6 7
VG6 N8 N8 N 0 1 N N N 29.257 1.553 33.470 29.257 1.553 33.470 N8 VG6 8
VG6 O9 O9 O 0 1 N N N 31.273 2.256 34.181 31.273 2.256 34.181 O9 VG6 9
VG6 C10 C10 C 0 1 N N S 29.087 2.641 32.516 29.087 2.641 32.516 C10 VG6 10
VG6 C11 C11 C 0 1 N N N 28.908 2.121 31.063 28.908 2.121 31.063 C11 VG6 11
VG6 C12 C12 C 0 1 N N R 28.086 3.726 32.998 28.086 3.726 32.998 C12 VG6 12
VG6 O13 O13 O 0 1 N N N 27.693 4.568 31.943 27.693 4.568 31.943 O13 VG6 13
VG6 C14 C14 C 0 1 Y N N 29.098 0.627 30.872 29.098 0.627 30.872 C14 VG6 14
VG6 C15 C15 C 0 1 N N N 28.748 4.625 34.036 28.748 4.625 34.036 C15 VG6 15
VG6 N16 N16 N 0 1 N N N 27.884 5.719 34.499 27.884 5.719 34.499 N16 VG6 16
VG6 C17 C17 C 0 1 Y N N 28.022 -0.300 30.823 28.022 -0.300 30.823 C17 VG6 17
VG6 C18 C18 C 0 1 Y N N 28.288 -1.678 30.628 28.288 -1.678 30.628 C18 VG6 18
VG6 C19 C19 C 0 1 Y N N 29.619 -2.140 30.479 29.619 -2.140 30.479 C19 VG6 19
VG6 C20 C20 C 0 1 Y N N 30.692 -1.227 30.527 30.692 -1.227 30.527 C20 VG6 20
VG6 C21 C21 C 0 1 Y N N 30.430 0.143 30.720 30.430 0.143 30.720 C21 VG6 21
VG6 N38 N38 N 0 1 N N N 29.361 -3.362 35.155 29.361 -3.362 35.155 N38 VG6 22
VG6 C39 C39 C 0 1 N N N 28.802 -3.690 33.840 28.802 -3.690 33.840 C39 VG6 23
VG6 C41 C41 C 0 1 N N N 27.278 -3.558 33.877 27.278 -3.558 33.877 C41 VG6 24
VG6 N47 N47 N 0 1 N N N 31.634 -0.698 38.478 31.634 -0.698 38.478 N47 VG6 25
VG6 C48 C48 C 0 1 N N N 31.074 -1.089 39.664 31.074 -1.089 39.664 C48 VG6 26
VG6 C49 C49 C 0 1 N N N 32.053 -0.814 40.804 32.053 -0.814 40.804 C49 VG6 27
VG6 C50 C50 C 0 1 N N N 33.372 -0.565 40.075 33.372 -0.565 40.075 C50 VG6 28
VG6 C51 C51 C 0 1 N N N 32.976 -0.143 38.667 32.976 -0.143 38.667 C51 VG6 29
VG6 O58 O58 O 0 1 N N N 29.967 -1.587 39.827 29.967 -1.587 39.827 O58 VG6 30
VG6 C59 C59 C 0 1 N N N 28.636 6.877 35.054 28.636 6.877 35.054 C59 VG6 31
VG6 C61 C61 C 0 1 Y N N 29.701 7.460 34.132 29.701 7.460 34.132 C61 VG6 32
VG6 C64 C64 C 0 1 Y N N 31.062 7.460 34.537 31.062 7.460 34.537 C64 VG6 33
VG6 C65 C65 C 0 1 Y N N 32.067 7.992 33.696 32.067 7.992 33.696 C65 VG6 34
VG6 C66 C66 C 0 1 Y N N 31.727 8.533 32.435 31.727 8.533 32.435 C66 VG6 35
VG6 C67 C67 C 0 1 Y N N 30.360 8.556 31.982 30.360 8.556 31.982 C67 VG6 36
VG6 C68 C68 C 0 1 Y N N 29.361 8.004 32.869 29.361 8.004 32.869 C68 VG6 37
VG6 C73 C73 C 0 1 N N N 29.962 9.152 30.585 29.962 9.152 30.585 C73 VG6 38
VG6 F74 F74 F 0 1 N N N 28.928 9.981 30.732 28.928 9.981 30.732 F74 VG6 39
VG6 F75 F75 F 0 1 N N N 29.623 8.147 29.799 29.623 8.147 29.799 F75 VG6 40
VG6 F76 F76 F 0 1 N N N 30.969 9.821 30.019 30.969 9.821 30.019 F76 VG6 41
VG6 H2 H2 H 0 1 N N N 29.376 -1.061 33.699 29.376 -1.061 33.699 H2 VG6 42
VG6 H6 H6 H 0 1 N N N 30.518 -2.896 37.423 30.518 -2.896 37.423 H6 VG6 43
VG6 H38 H38 H 0 1 N N N 30.124 -3.998 35.269 30.124 -3.998 35.269 H38 VG6 44
VG6 H4 H4 H 0 1 N N N 31.405 1.275 36.712 31.405 1.275 36.712 H4 VG6 45
VG6 H8 H8 H 0 1 N N N 28.533 0.868 33.555 28.533 0.868 33.555 H8 VG6 46
VG6 H10 H10 H 0 1 N N N 30.031 3.203 32.472 30.031 3.203 32.472 H10 VG6 47
VG6 H111 1H11 H 0 0 N N N 27.883 2.366 30.748 27.883 2.366 30.749 H111 VG6 48
VG6 H112 2H11 H 0 0 N N N 29.695 2.606 30.467 29.695 2.606 30.467 H112 VG6 49
VG6 H12 H12 H 0 1 N N N 27.217 3.193 33.411 27.217 3.193 33.411 H12 VG6 50
VG6 H13 H13 H 0 1 N N N 27.604 5.458 32.264 27.604 5.458 32.264 H13 VG6 51
VG6 H151 1H15 H 0 0 N N N 29.014 4.006 34.906 29.014 4.006 34.906 H151 VG6 52
VG6 H152 2H15 H 0 0 N N N 29.626 5.083 33.558 29.626 5.083 33.558 H152 VG6 53
VG6 H17 H17 H 0 1 N N N 27.005 0.045 30.934 27.005 0.045 30.934 H17 VG6 54
VG6 H21 H21 H 0 1 N N N 31.254 0.840 30.753 31.254 0.840 30.753 H21 VG6 55
VG6 H16 H16 H 0 1 N N N 27.346 6.042 33.720 27.346 6.042 33.720 H16 VG6 56
VG6 H591 1H59 H 0 0 N N N 27.909 7.674 35.269 27.909 7.674 35.269 H591 VG6 57
VG6 H592 2H59 H 0 0 N N N 29.167 6.504 35.942 29.167 6.504 35.942 H592 VG6 58
VG6 H18 H18 H 0 1 N N N 27.470 -2.382 30.593 27.470 -2.382 30.593 H18 VG6 59
VG6 H19 H19 H 0 1 N N N 29.812 -3.192 30.329 29.812 -3.192 30.329 H19 VG6 60
VG6 H20 H20 H 0 1 N N N 31.708 -1.576 30.417 31.708 -1.576 30.417 H20 VG6 61
VG6 H391 1H39 H 0 0 N N N 29.210 -2.999 33.088 29.210 -2.999 33.088 H391 VG6 62
VG6 H392 2H39 H 0 0 N N N 29.071 -4.724 33.579 29.071 -4.724 33.579 H392 VG6 63
VG6 H411 1H41 H 0 0 N N N 26.937 -3.526 34.922 26.938 -3.526 34.923 H411 VG6 64
VG6 H412 2H41 H 0 0 N N N 26.978 -2.632 33.366 26.978 -2.632 33.366 H412 VG6 65
VG6 H413 3H41 H 0 0 N N N 26.823 -4.421 33.369 26.823 -4.421 33.369 H413 VG6 66
VG6 H511 1H51 H 0 0 N N N 33.679 -0.543 37.921 33.679 -0.543 37.921 H511 VG6 67
VG6 H512 2H51 H 0 0 N N N 32.995 0.950 38.541 32.995 0.950 38.541 H512 VG6 68
VG6 H491 1H49 H 0 0 N N N 31.747 0.059 41.400 31.747 0.059 41.400 H491 VG6 69
VG6 H492 2H49 H 0 0 N N N 32.112 -1.639 41.529 32.112 -1.639 41.529 H492 VG6 70
VG6 H501 1H50 H 0 0 N N N 33.953 0.225 40.573 33.953 0.225 40.573 H501 VG6 71
VG6 H502 2H50 H 0 0 N N N 34.012 -1.460 40.069 34.012 -1.460 40.069 H502 VG6 72
VG6 H64 H64 H 0 1 N N N 31.333 7.049 35.498 31.333 7.049 35.498 H64 VG6 73
VG6 H68 H68 H 0 1 N N N 28.326 8.006 32.560 28.326 8.006 32.560 H68 VG6 74
VG6 H65 H65 H 0 1 N N N 33.098 7.985 34.018 33.098 7.985 34.018 H65 VG6 75
VG6 H66 H66 H 0 1 N N N 32.504 8.935 31.802 32.504 8.935 31.802 H66 VG6 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VG6 C1 C2 SING Y N 1
VG6 C1 C6 DOUB Y N 2
VG6 C1 N38 SING N N 3
VG6 C2 C3 DOUB Y N 4
VG6 C3 C4 SING Y N 5
VG6 C3 C7 SING N N 6
VG6 C4 C5 DOUB Y N 7
VG6 C5 C6 SING Y N 8
VG6 C5 N47 SING N N 9
VG6 C7 N8 SING N N 10
VG6 C7 O9 DOUB N N 11
VG6 N8 C10 SING N N 12
VG6 C10 C11 SING N N 13
VG6 C10 C12 SING N N 14
VG6 C11 C14 SING N N 15
VG6 C12 O13 SING N N 16
VG6 C12 C15 SING N N 17
VG6 C14 C17 SING Y N 18
VG6 C14 C21 DOUB Y N 19
VG6 C15 N16 SING N N 20
VG6 N16 C59 SING N N 21
VG6 C17 C18 DOUB Y N 22
VG6 C18 C19 SING Y N 23
VG6 C19 C20 DOUB Y N 24
VG6 C20 C21 SING Y N 25
VG6 N38 C39 SING N N 26
VG6 C39 C41 SING N N 27
VG6 N47 C48 SING N N 28
VG6 N47 C51 SING N N 29
VG6 C48 C49 SING N N 30
VG6 C48 O58 DOUB N N 31
VG6 C49 C50 SING N N 32
VG6 C50 C51 SING N N 33
VG6 C59 C61 SING N N 34
VG6 C61 C64 SING Y N 35
VG6 C61 C68 DOUB Y N 36
VG6 C64 C65 DOUB Y N 37
VG6 C65 C66 SING Y N 38
VG6 C66 C67 DOUB Y N 39
VG6 C67 C68 SING Y N 40
VG6 C67 C73 SING N N 41
VG6 C73 F74 SING N N 42
VG6 C73 F75 SING N N 43
VG6 C73 F76 SING N N 44
VG6 C2 H2 SING N N 45
VG6 C6 H6 SING N N 46
VG6 N38 H38 SING N N 47
VG6 C4 H4 SING N N 48
VG6 N8 H8 SING N N 49
VG6 C10 H10 SING N N 50
VG6 C11 H111 SING N N 51
VG6 C11 H112 SING N N 52
VG6 C12 H12 SING N N 53
VG6 O13 H13 SING N N 54
VG6 C15 H151 SING N N 55
VG6 C15 H152 SING N N 56
VG6 C17 H17 SING N N 57
VG6 C21 H21 SING N N 58
VG6 N16 H16 SING N N 59
VG6 C59 H591 SING N N 60
VG6 C59 H592 SING N N 61
VG6 C18 H18 SING N N 62
VG6 C19 H19 SING N N 63
VG6 C20 H20 SING N N 64
VG6 C39 H391 SING N N 65
VG6 C39 H392 SING N N 66
VG6 C41 H411 SING N N 67
VG6 C41 H412 SING N N 68
VG6 C41 H413 SING N N 69
VG6 C51 H511 SING N N 70
VG6 C51 H512 SING N N 71
VG6 C49 H491 SING N N 72
VG6 C49 H492 SING N N 73
VG6 C50 H501 SING N N 74
VG6 C50 H502 SING N N 75
VG6 C64 H64 SING N N 76
VG6 C68 H68 SING N N 77
VG6 C65 H65 SING N N 78
VG6 C66 H66 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VG6 SMILES ACDLabs 10.04 "FC(F)(F)c1cccc(c1)CNCC(O)C(NC(=O)c2cc(cc(c2)N3C(=O)CCC3)NCC)Cc4ccccc4"
VG6 SMILES_CANONICAL CACTVS 3.341 "CCNc1cc(cc(c1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)CNCc3cccc(c3)C(F)(F)F)N4CCCC4=O"
VG6 SMILES CACTVS 3.341 "CCNc1cc(cc(c1)C(=O)N[CH](Cc2ccccc2)[CH](O)CNCc3cccc(c3)C(F)(F)F)N4CCCC4=O"
VG6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCNc1cc(cc(c1)N2CCCC2=O)C(=O)N[C@@H](Cc3ccccc3)[C@@H](CNCc4cccc(c4)C(F)(F)F)O"
VG6 SMILES "OpenEye OEToolkits" 1.5.0 "CCNc1cc(cc(c1)N2CCCC2=O)C(=O)NC(Cc3ccccc3)C(CNCc4cccc(c4)C(F)(F)F)O"
VG6 InChI InChI 1.03
"InChI=1S/C31H35F3N4O3/c1-2-36-25-16-23(17-26(18-25)38-13-7-12-29(38)40)30(41)37-27(15-21-8-4-3-5-9-21)28(39)20-35-19-22-10-6-11-24(14-22)31(32,33)34/h3-6,8-11,14,16-18,27-28,35-36,39H,2,7,12-13,15,19-20H2,1H3,(H,37,41)/t27-,28+/m0/s1"
VG6 InChIKey InChI 1.03 QPGDTFHILHXFBQ-WUFINQPMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VG6 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide"
VG6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-ethylamino-N-[(2S,3R)-3-hydroxy-1-phenyl-4-[[3-(trifluoromethyl)phenyl]methylamino]butan-2-yl]-5-(2-oxopyrrolidin-1-yl)benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VG6 "Create component" 2007-12-06 EBI
VG6 "Modify aromatic_flag" 2011-06-04 RCSB
VG6 "Modify descriptor" 2011-06-04 RCSB
#