data_VGO # _chem_comp.id VGO _chem_comp.name "(3~{S},4~{S})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-06 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.155 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CQI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VGO C4 C1 C 0 1 N N N N N N -17.461 15.519 57.447 -1.807 0.893 -0.751 C4 VGO 1 VGO C5 C2 C 0 1 N N N N N N -16.773 16.912 57.572 -1.635 -0.244 0.258 C5 VGO 2 VGO C6 C3 C 0 1 N N S N N N -17.486 17.856 58.564 -0.212 -0.800 0.156 C6 VGO 3 VGO N1 N1 N 0 1 N N N N N N -17.761 14.945 58.768 -0.828 1.951 -0.470 N1 VGO 4 VGO C3 C4 C 0 1 N N N N N N -18.502 15.885 59.639 0.546 1.453 -0.608 C3 VGO 5 VGO O1 O1 O 0 1 N N N N N N -17.597 19.147 61.245 2.375 -1.353 -0.033 O1 VGO 6 VGO C1 C5 C 0 1 N N N N N N -18.315 18.193 60.888 2.192 -0.192 0.249 C1 VGO 7 VGO O2 O2 O 0 1 N N N N N N -19.480 18.038 61.280 3.240 0.629 0.423 O2 VGO 8 VGO C2 C6 C 0 1 N N S N N N -17.713 17.168 59.910 0.789 0.333 0.405 C2 VGO 9 VGO O3 O3 O 0 1 N N N N N N -15.430 16.760 57.993 -1.860 0.252 1.579 O3 VGO 10 VGO O4 O4 O 0 1 N N N N N N -16.924 17.609 56.355 -2.575 -1.282 -0.028 O4 VGO 11 VGO O5 O5 O 0 1 N N N N N N -18.745 18.292 58.041 -0.003 -1.342 -1.149 O5 VGO 12 VGO H1 H1 H 0 1 N N N N N N -18.400 15.633 56.885 -1.649 0.511 -1.760 H1 VGO 13 VGO H2 H2 H 0 1 N N N N N N -16.790 14.836 56.905 -2.815 1.300 -0.672 H2 VGO 14 VGO H3 H3 H 0 1 N N N N N N -16.836 18.728 58.730 -0.071 -1.581 0.903 H3 VGO 15 VGO H4 H4 H 0 1 N N N N N N -18.314 14.121 58.642 -0.984 2.754 -1.062 H4 VGO 16 VGO H6 H6 H 0 1 N N N N N N -19.450 16.150 59.148 0.693 1.068 -1.617 H6 VGO 17 VGO H7 H7 H 0 1 N N N N N N -18.711 15.389 60.598 1.247 2.267 -0.424 H7 VGO 18 VGO H8 H8 H 0 1 N N N N N N -19.712 18.744 61.872 4.121 0.247 0.312 H8 VGO 19 VGO H9 H9 H 0 1 N N N N N N -16.728 16.875 60.304 0.655 0.720 1.415 H9 VGO 20 VGO H10 H10 H 0 1 N N N N N N -15.407 16.284 58.815 -2.743 0.623 1.715 H10 VGO 21 VGO H11 H11 H 0 1 N N N N N N -16.507 18.460 56.423 -3.498 -1.000 0.016 H11 VGO 22 VGO H12 H12 H 0 1 N N N N N N -19.165 18.870 58.667 -0.607 -2.062 -1.377 H12 VGO 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VGO O4 C5 SING N N 1 VGO C4 C5 SING N N 2 VGO C4 N1 SING N N 3 VGO C5 O3 SING N N 4 VGO C5 C6 SING N N 5 VGO O5 C6 SING N N 6 VGO C6 C2 SING N N 7 VGO N1 C3 SING N N 8 VGO C3 C2 SING N N 9 VGO C2 C1 SING N N 10 VGO C1 O1 DOUB N N 11 VGO C1 O2 SING N N 12 VGO C4 H1 SING N N 13 VGO C4 H2 SING N N 14 VGO C6 H3 SING N N 15 VGO N1 H4 SING N N 16 VGO C3 H6 SING N N 17 VGO C3 H7 SING N N 18 VGO O2 H8 SING N N 19 VGO C2 H9 SING N N 20 VGO O3 H10 SING N N 21 VGO O4 H11 SING N N 22 VGO O5 H12 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VGO InChI InChI 1.06 "InChI=1S/C6H11NO5/c8-4-3(5(9)10)1-7-2-6(4,11)12/h3-4,7-8,11-12H,1-2H2,(H,9,10)/t3-,4-/m0/s1" VGO InChIKey InChI 1.06 VJJFPBNJYGLWRR-IMJSIDKUSA-N VGO SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](CNCC1(O)O)C(O)=O" VGO SMILES CACTVS 3.385 "O[CH]1[CH](CNCC1(O)O)C(O)=O" VGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H](C(CN1)(O)O)O)C(=O)O" VGO SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(CN1)(O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id VGO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},4~{S})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VGO "Create component" 2023-03-06 PDBE VGO "Initial release" 2024-01-10 RCSB #