data_VGT # _chem_comp.id VGT _chem_comp.name "4-((2-hydroxy-3-(phenylselanyl)propyl)thio)benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N O3 S2 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-18 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.390 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VGT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VGT C7 C1 C 0 1 Y N N -1.813 11.007 13.443 -5.672 -1.356 1.196 C7 VGT 1 VGT C8 C2 C 0 1 N N N -2.133 5.486 13.249 -0.013 0.709 -0.029 C8 VGT 2 VGT C9 C3 C 0 1 Y N N -4.423 4.329 14.376 2.750 1.131 0.107 C9 VGT 3 VGT O1 O1 O 0 1 N N N -5.464 1.019 18.135 7.654 -0.187 -0.509 O1 VGT 4 VGT C1 C4 C 0 1 N N N -2.055 7.948 12.796 -2.461 0.208 -0.042 C1 VGT 5 VGT C5 C5 C 0 1 Y N N -0.532 12.951 14.018 -6.951 -2.887 -0.129 C5 VGT 6 VGT C6 C6 C 0 1 Y N N -1.588 12.368 13.338 -6.464 -2.485 1.101 C6 VGT 7 VGT C4 C7 C 0 1 Y N N 0.310 12.163 14.802 -6.646 -2.160 -1.264 C4 VGT 8 VGT C3 C8 C 0 1 Y N N 0.087 10.800 14.919 -5.848 -1.034 -1.170 C3 VGT 9 VGT C2 C9 C 0 1 Y N N -0.982 10.232 14.250 -5.366 -0.629 0.060 C2 VGT 10 VGT O2 O2 O 0 1 N N N -7.478 0.939 16.708 6.399 -2.318 -0.868 O2 VGT 11 VGT S1 S1 S 0 1 N N N -6.037 0.853 16.821 6.665 -1.134 -0.130 S1 VGT 12 VGT N N1 N 0 1 N N N -5.526 -0.500 16.162 7.045 -1.617 1.408 N VGT 13 VGT C12 C10 C 0 1 Y N N -5.423 2.192 15.863 5.142 -0.253 -0.038 C12 VGT 14 VGT C11 C11 C 0 1 Y N N -6.262 3.254 15.496 5.147 1.115 0.171 C11 VGT 15 VGT C10 C12 C 0 1 Y N N -5.757 4.304 14.747 3.956 1.809 0.243 C10 VGT 16 VGT C13 C13 C 0 1 Y N N -4.084 2.217 15.481 3.944 -0.930 -0.174 C13 VGT 17 VGT C14 C14 C 0 1 Y N N -3.585 3.293 14.755 2.748 -0.243 -0.102 C14 VGT 18 VGT S S2 S 0 1 N N N -3.915 5.677 13.337 1.227 2.011 0.206 S VGT 19 VGT C C15 C 0 1 N N R -1.527 6.586 12.394 -1.414 1.321 0.031 C VGT 20 VGT O O3 O 0 1 N N N -1.961 6.397 11.034 -1.591 2.215 -1.070 O VGT 21 VGT SE SE1 SE 0 0 N N N -1.391 8.403 14.585 -4.249 0.975 0.195 SE VGT 22 VGT H1 H1 H 0 1 N N N -2.628 10.548 12.903 -5.295 -1.040 2.157 H1 VGT 23 VGT H2 H2 H 0 1 N N N -1.894 4.508 12.805 0.135 0.237 -1.000 H2 VGT 24 VGT H3 H3 H 0 1 N N N -1.711 5.541 14.264 0.091 -0.038 0.758 H3 VGT 25 VGT H4 H4 H 0 1 N N N -1.710 8.703 12.074 -2.402 -0.283 -1.014 H4 VGT 26 VGT H5 H5 H 0 1 N N N -3.155 7.926 12.807 -2.272 -0.522 0.745 H5 VGT 27 VGT H6 H6 H 0 1 N N N -0.361 14.015 13.941 -7.574 -3.766 -0.202 H6 VGT 28 VGT H7 H7 H 0 1 N N N -2.237 12.976 12.725 -6.703 -3.053 1.988 H7 VGT 29 VGT H8 H8 H 0 1 N N N 1.141 12.617 15.321 -7.030 -2.471 -2.224 H8 VGT 30 VGT H9 H9 H 0 1 N N N 0.740 10.189 15.525 -5.610 -0.466 -2.057 H9 VGT 31 VGT H10 H10 H 0 1 N N N -5.864 -1.278 16.692 7.578 -1.042 1.979 H10 VGT 32 VGT H11 H11 H 0 1 N N N -5.866 -0.563 15.224 6.735 -2.475 1.737 H11 VGT 33 VGT H12 H12 H 0 1 N N N -7.299 3.253 15.797 6.085 1.640 0.277 H12 VGT 34 VGT H13 H13 H 0 1 N N N -6.410 5.111 14.449 3.961 2.876 0.406 H13 VGT 35 VGT H14 H14 H 0 1 N N N -3.432 1.399 15.749 3.943 -1.997 -0.337 H14 VGT 36 VGT H15 H15 H 0 1 N N N -2.540 3.321 14.485 1.813 -0.772 -0.209 H15 VGT 37 VGT H16 H16 H 0 1 N N N -0.430 6.565 12.471 -1.531 1.869 0.966 H16 VGT 38 VGT H17 H17 H 0 1 N N N -1.659 5.553 10.719 -1.501 1.795 -1.936 H17 VGT 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VGT O C SING N N 1 VGT C C1 SING N N 2 VGT C C8 SING N N 3 VGT C1 SE SING N N 4 VGT C8 S SING N N 5 VGT S C9 SING N N 6 VGT C6 C7 DOUB Y N 7 VGT C6 C5 SING Y N 8 VGT C7 C2 SING Y N 9 VGT C5 C4 DOUB Y N 10 VGT C2 SE SING N N 11 VGT C2 C3 DOUB Y N 12 VGT C9 C10 DOUB Y N 13 VGT C9 C14 SING Y N 14 VGT C10 C11 SING Y N 15 VGT C14 C13 DOUB Y N 16 VGT C4 C3 SING Y N 17 VGT C13 C12 SING Y N 18 VGT C11 C12 DOUB Y N 19 VGT C12 S1 SING N N 20 VGT N S1 SING N N 21 VGT O2 S1 DOUB N N 22 VGT S1 O1 DOUB N N 23 VGT C7 H1 SING N N 24 VGT C8 H2 SING N N 25 VGT C8 H3 SING N N 26 VGT C1 H4 SING N N 27 VGT C1 H5 SING N N 28 VGT C5 H6 SING N N 29 VGT C6 H7 SING N N 30 VGT C4 H8 SING N N 31 VGT C3 H9 SING N N 32 VGT N H10 SING N N 33 VGT N H11 SING N N 34 VGT C11 H12 SING N N 35 VGT C10 H13 SING N N 36 VGT C13 H14 SING N N 37 VGT C14 H15 SING N N 38 VGT C H16 SING N N 39 VGT O H17 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VGT InChI InChI 1.03 "InChI=1S/C15H17NO3S2Se/c16-21(18,19)14-8-6-13(7-9-14)20-10-12(17)11-22-15-4-2-1-3-5-15/h1-9,12,17H,10-11H2,(H2,16,18,19)/t12-/m1/s1" VGT InChIKey InChI 1.03 QKCBBWIKTLMXPY-GFCCVEGCSA-N VGT SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)c1ccc(SC[C@@H](O)C[Se]c2ccccc2)cc1" VGT SMILES CACTVS 3.385 "N[S](=O)(=O)c1ccc(SC[CH](O)C[Se]c2ccccc2)cc1" VGT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[Se]C[C@@H](CSc2ccc(cc2)S(=O)(=O)N)O" VGT SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[Se]CC(CSc2ccc(cc2)S(=O)(=O)N)O" # _pdbx_chem_comp_identifier.comp_id VGT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(2~{R})-2-oxidanyl-3-phenylselanyl-propyl]sulfanylbenzenesulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VGT "Create component" 2021-05-18 PDBE VGT "Initial release" 2022-06-01 RCSB ##