data_VHG # _chem_comp.id VHG _chem_comp.name "3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{S})-4-ethyl-3-methyl-2-oxidanylidene-1,3-dihydropyrrol-5-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.694 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHG C1A C1 C 0 1 Y N N N N N -32.418 1.094 2.314 1.059 -0.354 -0.577 C1A VHG 1 VHG C1B C2 C 0 1 N N N N N N -34.136 -3.132 2.988 5.390 -0.020 0.272 C1B VHG 2 VHG C1C C3 C 0 1 N N N N N N -35.973 4.894 6.080 -7.261 1.423 -0.571 C1C VHG 3 VHG C1D C4 C 0 1 Y N N N N N -32.943 5.938 3.138 -3.138 0.431 0.587 C1D VHG 4 VHG C2A C5 C 0 1 Y N N N N N -31.900 0.237 1.395 1.269 -1.547 0.017 C2A VHG 5 VHG C2B C6 C 0 1 N N N N N N -34.230 -3.825 4.290 6.734 0.335 0.527 C2B VHG 6 VHG C2C C7 C 0 1 N N S N N N -36.600 6.228 6.214 -7.238 0.039 -1.188 C2C VHG 7 VHG C2D C8 C 0 1 Y N N N N N -32.027 6.136 1.999 -2.652 1.688 0.624 C2D VHG 8 VHG C3A C9 C 0 1 Y N N N N N -32.585 -0.903 1.433 2.473 -1.451 0.742 C3A VHG 9 VHG C3B C10 C 0 1 N N N N N N -33.607 -5.098 4.192 7.490 -0.172 -0.491 C3B VHG 10 VHG C3C C11 C 0 1 N N N N N N -35.822 7.204 5.352 -6.081 -0.645 -0.489 C3C VHG 11 VHG C3D C12 C 0 1 Y N N N N N -31.479 4.832 1.628 -1.461 1.702 -0.129 C3D VHG 12 VHG C4A C13 C 0 1 Y N N N N N -33.581 -0.784 2.384 2.954 -0.204 0.564 C4A VHG 13 VHG C4B C14 C 0 1 N N N N N N -33.037 -5.337 2.843 6.510 -0.869 -1.397 C4B VHG 14 VHG C4C C15 C 0 1 N N N N N N -34.675 6.538 4.690 -5.580 0.232 0.355 C4C VHG 15 VHG C4D C16 C 0 1 Y N N N N N -32.091 3.766 2.532 -1.265 0.452 -0.598 C4D VHG 16 VHG CAA C17 C 0 1 N N N N N N -30.736 0.550 0.474 0.378 -2.759 -0.077 CAA VHG 17 VHG CAB C18 C 0 1 N N N N N N -33.493 -6.117 5.295 8.893 -0.066 -0.660 CAB VHG 18 VHG CAC C19 C 0 1 N N N N N N -36.138 8.459 5.284 -5.599 -2.055 -0.714 CAC VHG 19 VHG CAD C20 C 0 1 N N N N N N -30.508 4.544 0.481 -0.570 2.893 -0.368 CAD VHG 20 VHG CBA C21 C 0 1 N N N N N N -29.934 -0.733 0.273 -0.656 -2.721 1.049 CBA VHG 21 VHG CBB C22 C 0 1 N N N N N N -32.281 -6.477 5.648 9.486 -0.627 -1.726 CBB VHG 22 VHG CBC C23 C 0 1 N N N N N N -36.928 8.960 6.430 -6.421 -3.019 0.144 CBC VHG 23 VHG CBD C24 C 0 1 N N N N N N -29.266 5.424 0.498 0.486 2.970 0.737 CBD VHG 24 VHG CHB C25 C 0 1 N N N N N N -34.552 -1.920 2.724 4.226 0.345 1.156 CHB VHG 25 VHG CHD C26 C 0 1 N N N N N N -33.752 7.006 3.871 -4.403 -0.047 1.253 CHD VHG 26 VHG CMA C27 C 0 1 N N N N N N -32.290 -2.101 0.528 3.107 -2.542 1.566 CMA VHG 27 VHG CMB C28 C 0 1 N N N N N N -34.924 -3.212 5.498 7.240 1.128 1.705 CMB VHG 28 VHG CMC C29 C 0 1 N N N N N N -36.397 6.641 7.665 -6.981 0.125 -2.694 CMC VHG 29 VHG CMD C30 C 0 1 N N N N N N -31.711 7.474 1.334 -3.268 2.862 1.339 CMD VHG 30 VHG NA N1 N 0 1 Y N N N N N -33.446 0.456 2.947 2.093 0.472 -0.250 NA VHG 31 VHG NB N2 N 0 1 N N N N N N -33.353 -4.073 2.041 5.293 -0.706 -0.842 NB VHG 32 VHG NC N3 N 0 1 N N N N N N -34.778 5.076 5.146 -6.248 1.442 0.318 NC VHG 33 VHG ND N4 N 0 1 Y N N N N N -32.973 4.497 3.484 -2.292 -0.332 -0.161 ND VHG 34 VHG CHA C31 C 0 1 N N N N N N -31.803 2.486 2.501 -0.112 0.001 -1.456 CHA VHG 35 VHG CGA C32 C 0 1 N N N N N N -28.609 -0.582 1.004 -1.547 -3.933 0.955 CGA VHG 36 VHG O1A O1 O 0 1 N N N N N N -28.554 -0.766 2.246 -2.534 -4.111 1.847 O1A VHG 37 VHG O2A O2 O 0 1 N N N N N N -27.583 -0.273 0.343 -1.372 -4.744 0.077 O2A VHG 38 VHG OB O3 O 0 1 N N N N N N -32.465 -6.301 2.464 6.765 -1.458 -2.426 OB VHG 39 VHG OC O4 O 0 1 N N N N N N -36.319 3.890 6.616 -8.027 2.327 -0.828 OC VHG 40 VHG CGD C33 C 0 1 N N N N N N -28.462 5.182 -0.785 1.376 4.162 0.498 CGD VHG 41 VHG O1D O5 O 0 1 N N N N N N -29.073 5.067 -1.886 1.186 4.877 -0.458 O1D VHG 42 VHG O2D O6 O 0 1 N N N N N N -27.197 5.117 -0.764 2.381 4.430 1.347 O2D VHG 43 VHG H1 H1 H 0 1 N N N N N N -37.667 6.213 5.945 -8.173 -0.485 -0.990 H1 VHG 44 VHG H2 H2 H 0 1 N N N N N N -30.098 1.322 0.929 -0.133 -2.760 -1.040 H2 VHG 45 VHG H3 H3 H 0 1 N N N N N N -31.113 0.910 -0.495 0.982 -3.662 0.014 H3 VHG 46 VHG H4 H4 H 0 1 N N N N N N -34.368 -6.532 5.773 9.486 0.467 0.070 H4 VHG 47 VHG H5 H5 H 0 1 N N N N N N -35.208 9.044 5.227 -5.716 -2.315 -1.766 H5 VHG 48 VHG H6 H6 H 0 1 N N N N N N -36.726 8.615 4.368 -4.548 -2.128 -0.437 H6 VHG 49 VHG H7 H7 H 0 1 N N N N N N -31.036 4.706 -0.470 -0.078 2.791 -1.335 H7 VHG 50 VHG H8 H8 H 0 1 N N N N N N -30.190 3.493 0.550 -1.171 3.803 -0.361 H8 VHG 51 VHG H9 H9 H 0 1 N N N N N N -30.491 -1.589 0.683 -0.145 -2.720 2.012 H9 VHG 52 VHG H10 H10 H 0 1 N N N N N N -29.752 -0.894 -0.800 -1.260 -1.818 0.958 H10 VHG 53 VHG H11 H11 H 0 1 N N N N N N -32.141 -7.205 6.434 8.894 -1.160 -2.455 H11 VHG 54 VHG H12 H12 H 0 1 N N N N N N -31.424 -6.046 5.153 10.556 -0.546 -1.854 H12 VHG 55 VHG H13 H13 H 0 1 N N N N N N -37.148 10.028 6.285 -6.072 -4.038 -0.019 H13 VHG 56 VHG H14 H14 H 0 1 N N N N N N -37.871 8.398 6.499 -6.304 -2.758 1.196 H14 VHG 57 VHG H15 H15 H 0 1 N N N N N N -36.353 8.827 7.358 -7.473 -2.945 -0.133 H15 VHG 58 VHG H16 H16 H 0 1 N N N N N N -28.648 5.172 1.373 -0.007 3.073 1.703 H16 VHG 59 VHG H17 H17 H 0 1 N N N N N N -29.564 6.481 0.552 1.086 2.061 0.729 H17 VHG 60 VHG H18 H18 H 0 1 N N N N N N -35.116 -1.589 3.608 4.377 -0.078 2.149 H18 VHG 61 VHG H19 H19 H 0 1 N N N N N N -35.235 -2.009 1.866 4.153 1.430 1.231 H19 VHG 62 VHG H20 H20 H 0 1 N N N N N N -33.054 7.621 4.458 -4.333 -1.119 1.438 H20 VHG 63 VHG H21 H21 H 0 1 N N N N N N -34.250 7.635 3.118 -4.535 0.477 2.200 H21 VHG 64 VHG H22 H22 H 0 1 N N N N N N -31.569 -2.767 1.024 3.782 -3.125 0.940 H22 VHG 65 VHG H23 H23 H 0 1 N N N N N N -33.222 -2.651 0.333 3.667 -2.097 2.389 H23 VHG 66 VHG H24 H24 H 0 1 N N N N N N -31.867 -1.746 -0.424 2.330 -3.194 1.967 H24 VHG 67 VHG H25 H25 H 0 1 N N N N N N -34.867 -3.909 6.347 7.491 0.449 2.519 H25 VHG 68 VHG H26 H26 H 0 1 N N N N N N -34.428 -2.267 5.765 8.128 1.688 1.411 H26 VHG 69 VHG H27 H27 H 0 1 N N N N N N -35.979 -3.016 5.255 6.467 1.821 2.036 H27 VHG 70 VHG H28 H28 H 0 1 N N N N N N -36.949 5.953 8.323 -6.031 0.630 -2.872 H28 VHG 71 VHG H29 H29 H 0 1 N N N N N N -35.325 6.603 7.911 -6.942 -0.880 -3.114 H29 VHG 72 VHG H30 H30 H 0 1 N N N N N N -36.770 7.666 7.810 -7.786 0.687 -3.168 H30 VHG 73 VHG H31 H31 H 0 1 N N N N N N -32.422 7.654 0.515 -2.880 2.913 2.356 H31 VHG 74 VHG H32 H32 H 0 1 N N N N N N -31.795 8.281 2.076 -3.020 3.782 0.809 H32 VHG 75 VHG H33 H33 H 0 1 N N N N N N -30.687 7.451 0.932 -4.351 2.741 1.369 H33 VHG 76 VHG H34 H34 H 0 1 N N N N N N -34.002 0.829 3.690 2.198 1.390 -0.545 H34 VHG 77 VHG H35 H35 H 0 1 N N N N N N -34.152 4.346 4.871 -6.021 2.208 0.869 H35 VHG 78 VHG H36 H36 H 0 1 N N N N N N -33.497 4.085 4.230 -2.403 -1.276 -0.355 H36 VHG 79 VHG H37 H37 H 0 1 N N N N N N -31.325 2.364 3.484 0.174 0.806 -2.133 H37 VHG 80 VHG H38 H38 H 0 1 N N N N N N -31.033 2.472 1.715 -0.410 -0.873 -2.035 H38 VHG 81 VHG H39 H39 H 0 1 N N N N N N -27.662 -0.635 2.547 -3.079 -4.903 1.746 H39 VHG 82 VHG H40 H40 H 0 1 N N N N N N -26.872 4.981 -1.646 2.925 5.206 1.152 H40 VHG 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHG O1D CGD DOUB N N 1 VHG CGD O2D SING N N 2 VHG CGD CBD SING N N 3 VHG CBA CAA SING N N 4 VHG CBA CGA SING N N 5 VHG O2A CGA DOUB N N 6 VHG CAA C2A SING N N 7 VHG CAD CBD SING N N 8 VHG CAD C3D SING N N 9 VHG CMA C3A SING N N 10 VHG CGA O1A SING N N 11 VHG CMD C2D SING N N 12 VHG C2A C3A SING Y N 13 VHG C2A C1A DOUB Y N 14 VHG C3A C4A DOUB Y N 15 VHG C3D C2D SING Y N 16 VHG C3D C4D DOUB Y N 17 VHG C2D C1D DOUB Y N 18 VHG NB C4B SING N N 19 VHG NB C1B DOUB N N 20 VHG C1A CHA SING N N 21 VHG C1A NA SING Y N 22 VHG C4A CHB SING N N 23 VHG C4A NA SING Y N 24 VHG OB C4B DOUB N N 25 VHG CHA C4D SING N N 26 VHG C4D ND SING Y N 27 VHG CHB C1B SING N N 28 VHG C4B C3B SING N N 29 VHG C1B C2B SING N N 30 VHG C1D ND SING Y N 31 VHG C1D CHD SING N N 32 VHG CHD C4C SING N N 33 VHG C3B C2B DOUB N N 34 VHG C3B CAB SING N N 35 VHG C2B CMB SING N N 36 VHG C4C NC SING N N 37 VHG C4C C3C DOUB N N 38 VHG NC C1C SING N N 39 VHG CAC C3C SING N N 40 VHG CAC CBC SING N N 41 VHG CAB CBB DOUB N N 42 VHG C3C C2C SING N N 43 VHG C1C C2C SING N N 44 VHG C1C OC DOUB N N 45 VHG C2C CMC SING N N 46 VHG C2C H1 SING N N 47 VHG CAA H2 SING N N 48 VHG CAA H3 SING N N 49 VHG CAB H4 SING N N 50 VHG CAC H5 SING N N 51 VHG CAC H6 SING N N 52 VHG CAD H7 SING N N 53 VHG CAD H8 SING N N 54 VHG CBA H9 SING N N 55 VHG CBA H10 SING N N 56 VHG CBB H11 SING N N 57 VHG CBB H12 SING N N 58 VHG CBC H13 SING N N 59 VHG CBC H14 SING N N 60 VHG CBC H15 SING N N 61 VHG CBD H16 SING N N 62 VHG CBD H17 SING N N 63 VHG CHB H18 SING N N 64 VHG CHB H19 SING N N 65 VHG CHD H20 SING N N 66 VHG CHD H21 SING N N 67 VHG CMA H22 SING N N 68 VHG CMA H23 SING N N 69 VHG CMA H24 SING N N 70 VHG CMB H25 SING N N 71 VHG CMB H26 SING N N 72 VHG CMB H27 SING N N 73 VHG CMC H28 SING N N 74 VHG CMC H29 SING N N 75 VHG CMC H30 SING N N 76 VHG CMD H31 SING N N 77 VHG CMD H32 SING N N 78 VHG CMD H33 SING N N 79 VHG NA H34 SING N N 80 VHG NC H35 SING N N 81 VHG ND H36 SING N N 82 VHG CHA H37 SING N N 83 VHG CHA H38 SING N N 84 VHG O1A H39 SING N N 85 VHG O2D H40 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHG InChI InChI 1.03 "InChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,19,34-35H,2,7,9-15H2,1,3-6H3,(H,37,42)(H,38,39)(H,40,41)/t19-/m0/s1" VHG InChIKey InChI 1.03 HLNBFSQHDRNIJH-IBGZPJMESA-N VHG SMILES_CANONICAL CACTVS 3.385 "CCC1=C(Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C)NC(=O)[C@H]1C" VHG SMILES CACTVS 3.385 "CCC1=C(Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C)NC(=O)[CH]1C" VHG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=O)[C@H]1C)Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C" VHG SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=O)C1C)Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C" # _pdbx_chem_comp_identifier.comp_id VHG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{S})-4-ethyl-3-methyl-2-oxidanylidene-1,3-dihydropyrrol-5-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHG "Create component" 2020-08-12 RCSB VHG "Initial release" 2021-10-06 RCSB VHG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VHG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CBC _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #