data_VHH # _chem_comp.id VHH _chem_comp.name "5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-09-09 _chem_comp.pdbx_modified_date 2011-12-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.364 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VHH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHH N1 N1 N 0 1 N N N 28.901 -2.214 7.752 3.654 -0.261 -0.333 N1 VHH 1 VHH S1 S1 S 0 1 N N N 29.040 -4.410 10.097 1.068 1.826 -0.532 S1 VHH 2 VHH C2 C2 C 0 1 N N S 30.341 -3.372 10.624 0.656 0.899 1.002 C2 VHH 3 VHH N2 N2 N 0 1 N N N 30.998 -2.380 8.411 1.839 -1.213 0.586 N2 VHH 4 VHH C3 C3 C 0 1 N N N 30.118 -2.494 7.418 2.842 -1.326 -0.296 C3 VHH 5 VHH O3 O3 O 0 1 N N N 30.338 -2.761 6.142 3.000 -2.306 -0.998 O3 VHH 6 VHH C4 C4 C 0 1 N N S 30.288 -2.139 9.652 1.940 0.089 1.264 C4 VHH 7 VHH C5 C5 C 0 1 N N R 28.809 -1.965 9.159 3.180 0.739 0.637 C5 VHH 8 VHH C6 C6 C 0 1 N N N 27.936 -3.101 9.685 2.844 2.047 -0.106 C6 VHH 9 VHH C7 C7 C 0 1 N N N 31.646 -4.176 10.764 -0.535 -0.032 0.769 C7 VHH 10 VHH C8 C8 C 0 1 N N N 31.708 -5.063 11.774 -1.779 0.800 0.452 C8 VHH 11 VHH C9 C9 C 0 1 N N N 32.950 -5.935 12.055 -2.970 -0.132 0.219 C9 VHH 12 VHH C10 C10 C 0 1 N N N 32.762 -6.845 13.273 -4.214 0.701 -0.098 C10 VHH 13 VHH C11 C11 C 0 1 N N N 33.025 -6.335 14.492 -5.388 -0.217 -0.327 C11 VHH 14 VHH O11 O11 O 0 1 N N N 33.429 -5.156 14.562 -6.593 0.295 -0.622 O11 VHH 15 VHH O12 O12 O 0 1 N N N 32.906 -7.000 15.540 -5.244 -1.414 -0.245 O12 VHH 16 VHH C17 C17 C 0 1 N N N 32.464 -2.323 8.282 0.807 -2.223 0.834 C17 VHH 17 VHH C18 C18 C 0 1 N N N 27.810 -2.096 6.774 4.829 -0.117 -1.196 C18 VHH 18 VHH H2 H2 H 0 1 N N N 30.256 -2.964 11.642 0.457 1.584 1.826 H2 VHH 19 VHH H4 H4 H 0 1 N N N 30.712 -1.290 10.209 2.084 -0.054 2.335 H4 VHH 20 VHH H5 H5 H 0 1 N N N 28.398 -0.992 9.465 3.939 0.916 1.398 H5 VHH 21 VHH H6 H6 H 0 1 N N N 27.218 -3.426 8.917 3.448 2.145 -1.008 H6 VHH 22 VHH H6A H6A H 0 1 N N N 27.370 -2.777 10.571 2.980 2.908 0.548 H6A VHH 23 VHH H7 H7 H 0 1 N N N 31.779 -4.741 9.829 -0.319 -0.696 -0.068 H7 VHH 24 VHH H7A H7A H 0 1 N N N 32.457 -3.450 10.921 -0.714 -0.625 1.666 H7A VHH 25 VHH H8 H8 H 0 1 N N N 31.561 -4.469 12.688 -1.995 1.464 1.289 H8 VHH 26 VHH H8A H8A H 0 1 N N N 30.893 -5.776 11.581 -1.601 1.393 -0.445 H8A VHH 27 VHH H9 H9 H 0 1 N N N 33.140 -6.566 11.174 -2.754 -0.796 -0.618 H9 VHH 28 VHH H9A H9A H 0 1 N N N 33.807 -5.271 12.244 -3.149 -0.725 1.116 H9A VHH 29 VHH H10 H10 H 0 1 N N N 31.705 -7.150 13.279 -4.431 1.364 0.739 H10 VHH 30 VHH H10A H10A H 0 0 N N N 33.439 -7.701 13.136 -4.036 1.293 -0.995 H10A VHH 31 VHH HO11 HO11 H 0 0 N N N 33.596 -4.931 15.470 -7.315 -0.333 -0.761 HO11 VHH 32 VHH H17 H17 H 0 1 N N N 32.917 -2.228 9.280 1.281 -3.175 1.074 H17 VHH 33 VHH H17A H17A H 0 0 N N N 32.826 -3.244 7.801 0.182 -1.907 1.669 H17A VHH 34 VHH H17B H17B H 0 0 N N N 32.744 -1.454 7.668 0.190 -2.339 -0.058 H17B VHH 35 VHH H18 H18 H 0 1 N N N 26.873 -1.853 7.297 4.943 -1.013 -1.807 H18 VHH 36 VHH H18A H18A H 0 0 N N N 28.047 -1.298 6.055 4.700 0.750 -1.844 H18A VHH 37 VHH H18B H18B H 0 0 N N N 27.694 -3.049 6.238 5.718 0.018 -0.580 H18B VHH 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHH N1 C3 SING N N 1 VHH N1 C5 SING N N 2 VHH N1 C18 SING N N 3 VHH S1 C2 SING N N 4 VHH S1 C6 SING N N 5 VHH C2 C4 SING N N 6 VHH C2 C7 SING N N 7 VHH N2 C3 SING N N 8 VHH N2 C4 SING N N 9 VHH N2 C17 SING N N 10 VHH C3 O3 DOUB N N 11 VHH C4 C5 SING N N 12 VHH C5 C6 SING N N 13 VHH C7 C8 SING N N 14 VHH C8 C9 SING N N 15 VHH C9 C10 SING N N 16 VHH C10 C11 SING N N 17 VHH C11 O11 SING N N 18 VHH C11 O12 DOUB N N 19 VHH C2 H2 SING N N 20 VHH C4 H4 SING N N 21 VHH C5 H5 SING N N 22 VHH C6 H6 SING N N 23 VHH C6 H6A SING N N 24 VHH C7 H7 SING N N 25 VHH C7 H7A SING N N 26 VHH C8 H8 SING N N 27 VHH C8 H8A SING N N 28 VHH C9 H9 SING N N 29 VHH C9 H9A SING N N 30 VHH C10 H10 SING N N 31 VHH C10 H10A SING N N 32 VHH O11 HO11 SING N N 33 VHH C17 H17 SING N N 34 VHH C17 H17A SING N N 35 VHH C17 H17B SING N N 36 VHH C18 H18 SING N N 37 VHH C18 H18A SING N N 38 VHH C18 H18B SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHH SMILES ACDLabs 12.01 "O=C(O)CCCCC1SCC2N(C(=O)N(C12)C)C" VHH InChI InChI 1.03 "InChI=1S/C12H20N2O3S/c1-13-8-7-18-9(5-3-4-6-10(15)16)11(8)14(2)12(13)17/h8-9,11H,3-7H2,1-2H3,(H,15,16)/t8-,9-,11-/m0/s1" VHH InChIKey InChI 1.03 PECDAVNFXWSGFV-QXEWZRGKSA-N VHH SMILES_CANONICAL CACTVS 3.370 "CN1[C@H]2CS[C@@H](CCCCC(O)=O)[C@H]2N(C)C1=O" VHH SMILES CACTVS 3.370 "CN1[CH]2CS[CH](CCCCC(O)=O)[CH]2N(C)C1=O" VHH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CN1[C@H]2CS[C@H]([C@H]2N(C1=O)C)CCCCC(=O)O" VHH SMILES "OpenEye OEToolkits" 1.7.2 "CN1C2CSC(C2N(C1=O)C)CCCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VHH "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid" VHH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxidanylidene-3a,4,6,6a-tetrahydrothieno[3,4-d]imidazol-4-yl]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHH "Create component" 2011-09-09 PDBJ #