data_VHJ # _chem_comp.id VHJ _chem_comp.name "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propan-2-yl}-L-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JQ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHJ C1 C1 C 0 1 Y N N N N N 44.958 10.059 -17.414 9.427 1.545 0.986 C1 VHJ 1 VHJ C10 C2 C 0 1 Y N N N N N 44.030 -0.917 -17.327 0.532 1.604 -1.657 C10 VHJ 2 VHJ C11 C3 C 0 1 N N S N N N 42.623 4.609 -14.473 1.512 -1.584 -0.202 C11 VHJ 3 VHJ C12 C4 C 0 1 N N N N N N 41.902 3.303 -14.298 0.296 -0.726 0.034 C12 VHJ 4 VHJ C13 C5 C 0 1 Y N N N N N 44.052 -1.020 -18.710 1.632 2.381 -1.345 C13 VHJ 5 VHJ C14 C6 C 0 1 N N S N N N 42.121 0.866 -14.548 -2.010 -0.109 -0.453 C14 VHJ 6 VHJ C15 C7 C 0 1 N N N N N N 42.116 0.522 -13.091 -3.277 -0.880 -0.722 C15 VHJ 7 VHJ C16 C8 C 0 1 Y N N N N N 43.083 -0.332 -19.425 1.502 3.446 -0.474 C16 VHJ 8 VHJ C17 C9 C 0 1 N N S N N N 40.913 -0.439 -11.238 -5.704 -1.012 -0.896 C17 VHJ 9 VHJ C18 C10 C 0 1 Y N N N N N 42.116 0.442 -18.778 0.271 3.736 0.084 C18 VHJ 10 VHJ C19 C11 C 0 1 N N N N N N 39.925 0.367 -10.401 -6.871 -0.346 -0.165 C19 VHJ 11 VHJ C2 C12 C 0 1 Y N N N N N 43.615 10.363 -17.217 9.104 0.348 1.597 C2 VHJ 12 VHJ C20 C13 C 0 1 N N S N N N 40.313 1.838 -10.435 -6.650 -0.444 1.345 C20 VHJ 13 VHJ C21 C14 C 0 1 N N N N N N 41.408 2.180 -9.430 -7.833 0.197 2.108 C21 VHJ 14 VHJ C22 C15 C 0 1 N N N N N N 40.855 3.308 -8.556 -7.319 1.635 2.335 C22 VHJ 15 VHJ C23 C16 C 0 1 Y N N N N N 42.101 0.538 -17.390 -0.830 2.960 -0.229 C23 VHJ 16 VHJ C24 C17 C 0 1 N N N N N N 39.151 2.671 -9.992 -5.451 0.381 1.760 C24 VHJ 17 VHJ C25 C18 C 0 1 N N N N N N 40.538 -1.920 -11.371 -5.984 -1.025 -2.400 C25 VHJ 18 VHJ C3 C19 C 0 1 Y N N N N N 42.631 9.450 -17.588 8.080 -0.432 1.093 C3 VHJ 19 VHJ C30 C20 C 0 1 N N N N N N 42.824 5.281 -13.128 1.391 -2.875 0.609 C30 VHJ 20 VHJ C31 C21 C 0 1 N N N N N N 43.386 6.676 -13.362 2.575 -3.790 0.292 C31 VHJ 21 VHJ C32 C22 C 0 1 N N N N N N 43.689 4.425 -12.210 1.391 -2.541 2.102 C32 VHJ 22 VHJ C34 C23 C 0 1 N N N N N N 43.128 -0.095 -15.163 -1.900 1.052 -1.444 C34 VHJ 23 VHJ C4 C24 C 0 1 Y N N N N N 42.972 8.226 -18.143 7.379 -0.015 -0.023 C4 VHJ 24 VHJ C5 C25 C 0 1 Y N N N N N 44.320 7.925 -18.335 7.702 1.182 -0.635 C5 VHJ 25 VHJ C6 C26 C 0 1 Y N N N N N 45.311 8.835 -17.969 8.722 1.965 -0.127 C6 VHJ 26 VHJ C7 C27 C 0 1 N N N N N N 41.881 7.248 -18.542 6.264 -0.866 -0.574 C7 VHJ 27 VHJ C8 C28 C 0 1 Y N N N N N 43.072 -0.148 -16.670 -0.699 1.894 -1.099 C8 VHJ 28 VHJ C9 C29 C 0 1 N N N N N N 42.270 5.769 -16.558 3.908 -1.157 -0.329 C9 VHJ 29 VHJ N10 N1 N 0 1 N N N N N N 41.879 5.521 -15.314 2.713 -0.855 0.215 N10 VHJ 30 VHJ N13 N2 N 0 1 N N N N N N 42.538 2.237 -14.782 -0.856 -0.997 -0.611 N13 VHJ 31 VHJ N16 N3 N 0 1 N N N N N N 40.955 0.187 -12.546 -4.472 -0.263 -0.635 N16 VHJ 32 VHJ N23 N4 N 0 1 N N N N N N 39.486 3.496 -8.999 -5.855 1.536 2.316 N23 VHJ 33 VHJ O1 O1 O 0 1 N N N N N N 40.660 -2.627 -10.139 -6.250 0.306 -2.846 O1 VHJ 34 VHJ O26 O2 O 0 1 N N N N N N 38.053 2.566 -10.511 -4.294 0.047 1.612 O26 VHJ 35 VHJ O29 O3 O 0 1 N N N N N N 43.338 5.369 -16.998 3.990 -2.034 -1.166 O29 VHJ 36 VHJ O33 O4 O 0 1 N N N N N N 40.805 3.261 -13.761 0.354 0.209 0.805 O33 VHJ 37 VHJ O38 O5 O 0 1 N N N N N N 43.160 0.540 -12.455 -3.221 -2.055 -1.016 O38 VHJ 38 VHJ O8 O6 O 0 1 N N N N N N 41.371 6.528 -17.419 5.011 -0.488 0.055 O8 VHJ 39 VHJ H1 H1 H 0 1 N N N N N N 45.722 10.770 -17.137 10.227 2.154 1.380 H1 VHJ 40 VHJ H2 H2 H 0 1 N N N N N N 44.772 -1.445 -16.746 0.633 0.774 -2.341 H2 VHJ 41 VHJ H3 H3 H 0 1 N N N N N N 43.609 4.414 -14.921 1.585 -1.827 -1.262 H3 VHJ 42 VHJ H4 H4 H 0 1 N N N N N N 44.799 -1.616 -19.213 2.594 2.154 -1.781 H4 VHJ 43 VHJ H5 H5 H 0 1 N N N N N N 41.126 0.685 -14.980 -2.032 0.282 0.564 H5 VHJ 44 VHJ H6 H6 H 0 1 N N N N N N 43.076 -0.396 -20.503 2.362 4.052 -0.230 H6 VHJ 45 VHJ H7 H7 H 0 1 N N N N N N 41.905 -0.373 -10.767 -5.589 -2.036 -0.539 H7 VHJ 46 VHJ H8 H8 H 0 1 N N N N N N 41.375 0.970 -19.360 0.169 4.568 0.765 H8 VHJ 47 VHJ H9 H9 H 0 1 N N N N N N 38.912 0.245 -10.812 -6.931 0.703 -0.456 H9 VHJ 48 VHJ H10 H10 H 0 1 N N N N N N 39.945 0.006 -9.362 -7.801 -0.849 -0.430 H10 VHJ 49 VHJ H11 H11 H 0 1 N N N N N N 43.335 11.308 -16.776 9.652 0.022 2.469 H11 VHJ 50 VHJ H12 H12 H 0 1 N N N N N N 40.628 2.124 -11.449 -6.519 -1.484 1.644 H12 VHJ 51 VHJ H13 H13 H 0 1 N N N N N N 41.645 1.301 -8.812 -8.736 0.197 1.498 H13 VHJ 52 VHJ H14 H14 H 0 1 N N N N N N 42.315 2.515 -9.955 -8.005 -0.311 3.058 H14 VHJ 53 VHJ H15 H15 H 0 1 N N N N N N 40.881 3.021 -7.494 -7.663 2.290 1.535 H15 VHJ 54 VHJ H16 H16 H 0 1 N N N N N N 41.353 1.131 -16.884 -1.791 3.186 0.208 H16 VHJ 55 VHJ H17 H17 H 0 1 N N N N N N 39.496 -1.990 -11.716 -5.116 -1.419 -2.928 H17 VHJ 56 VHJ H18 H18 H 0 1 N Y N N N N 41.203 -2.387 -12.113 -6.850 -1.656 -2.603 H18 VHJ 57 VHJ H19 H19 H 0 1 N N N N N N 41.590 9.698 -17.442 7.828 -1.368 1.571 H19 VHJ 58 VHJ H20 H20 H 0 1 N N N N N N 41.837 5.391 -12.654 0.461 -3.381 0.350 H20 VHJ 59 VHJ H21 H21 H 0 1 N N N N N N 43.538 7.178 -12.395 3.497 -3.329 0.647 H21 VHJ 60 VHJ H22 H22 H 0 1 N N N N N N 44.348 6.600 -13.890 2.435 -4.751 0.788 H22 VHJ 61 VHJ H23 H23 H 0 1 N N N N N N 42.679 7.259 -13.970 2.637 -3.943 -0.785 H23 VHJ 62 VHJ H24 H24 H 0 1 N N N N N N 43.817 4.936 -11.245 0.547 -1.889 2.329 H24 VHJ 63 VHJ H25 H25 H 0 1 N N N N N N 43.201 3.453 -12.048 1.305 -3.461 2.681 H25 VHJ 64 VHJ H26 H26 H 0 1 N N N N N N 44.673 4.268 -12.675 2.321 -2.035 2.362 H26 VHJ 65 VHJ H27 H27 H 0 1 N N N N N N 42.929 -1.104 -14.772 -1.789 0.658 -2.454 H27 VHJ 66 VHJ H28 H28 H 0 1 N N N N N N 44.138 0.222 -14.864 -2.801 1.663 -1.389 H28 VHJ 67 VHJ H29 H29 H 0 1 N N N N N N 44.599 6.977 -18.772 7.154 1.507 -1.507 H29 VHJ 68 VHJ H30 H30 H 0 1 N N N N N N 46.352 8.589 -18.117 8.974 2.900 -0.604 H30 VHJ 69 VHJ H31 H31 H 0 1 N N N N N N 41.057 7.807 -19.010 6.190 -0.716 -1.651 H31 VHJ 70 VHJ H32 H32 H 0 1 N N N N N N 42.295 6.530 -19.266 6.472 -1.916 -0.367 H32 VHJ 71 VHJ H33 H33 H 0 1 N N N N N N 41.061 5.970 -14.954 2.647 -0.155 0.884 H33 VHJ 72 VHJ H34 H34 H 0 1 N N N N N N 43.353 2.391 -15.341 -0.920 -1.780 -1.180 H34 VHJ 73 VHJ H35 H35 H 0 1 N N N N N N 40.104 0.367 -13.039 -4.517 0.677 -0.400 H35 VHJ 74 VHJ H36 H36 H 0 1 N N N N N N 40.418 -3.536 -10.270 -6.437 0.374 -3.793 H36 VHJ 75 VHJ H37 H37 H 0 1 N N N N N N 41.438 4.230 -8.701 -7.660 2.010 3.301 H37 VHJ 76 VHJ H38 H38 H 0 1 N N N N N N 38.862 4.170 -8.603 -5.255 2.217 2.659 H38 VHJ 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHJ C16 C18 DOUB Y N 1 VHJ C16 C13 SING Y N 2 VHJ C18 C23 SING Y N 3 VHJ C13 C10 DOUB Y N 4 VHJ C7 C4 SING N N 5 VHJ C7 O8 SING N N 6 VHJ C5 C4 DOUB Y N 7 VHJ C5 C6 SING Y N 8 VHJ C4 C3 SING Y N 9 VHJ C6 C1 DOUB Y N 10 VHJ C3 C2 DOUB Y N 11 VHJ O8 C9 SING N N 12 VHJ C1 C2 SING Y N 13 VHJ C23 C8 DOUB Y N 14 VHJ C10 C8 SING Y N 15 VHJ O29 C9 DOUB N N 16 VHJ C8 C34 SING N N 17 VHJ C9 N10 SING N N 18 VHJ N10 C11 SING N N 19 VHJ C34 C14 SING N N 20 VHJ N13 C14 SING N N 21 VHJ N13 C12 SING N N 22 VHJ C14 C15 SING N N 23 VHJ C11 C12 SING N N 24 VHJ C11 C30 SING N N 25 VHJ C12 O33 DOUB N N 26 VHJ C31 C30 SING N N 27 VHJ C30 C32 SING N N 28 VHJ C15 N16 SING N N 29 VHJ C15 O38 DOUB N N 30 VHJ N16 C17 SING N N 31 VHJ C25 C17 SING N N 32 VHJ C25 O1 SING N N 33 VHJ C17 C19 SING N N 34 VHJ O26 C24 DOUB N N 35 VHJ C20 C19 SING N N 36 VHJ C20 C24 SING N N 37 VHJ C20 C21 SING N N 38 VHJ C24 N23 SING N N 39 VHJ C21 C22 SING N N 40 VHJ N23 C22 SING N N 41 VHJ C1 H1 SING N N 42 VHJ C10 H2 SING N N 43 VHJ C11 H3 SING N N 44 VHJ C13 H4 SING N N 45 VHJ C14 H5 SING N N 46 VHJ C16 H6 SING N N 47 VHJ C17 H7 SING N N 48 VHJ C18 H8 SING N N 49 VHJ C19 H9 SING N N 50 VHJ C19 H10 SING N N 51 VHJ C2 H11 SING N N 52 VHJ C20 H12 SING N N 53 VHJ C21 H13 SING N N 54 VHJ C21 H14 SING N N 55 VHJ C22 H15 SING N N 56 VHJ C23 H16 SING N N 57 VHJ C25 H17 SING N N 58 VHJ C25 H18 SING N N 59 VHJ C3 H19 SING N N 60 VHJ C30 H20 SING N N 61 VHJ C31 H21 SING N N 62 VHJ C31 H22 SING N N 63 VHJ C31 H23 SING N N 64 VHJ C32 H24 SING N N 65 VHJ C32 H25 SING N N 66 VHJ C32 H26 SING N N 67 VHJ C34 H27 SING N N 68 VHJ C34 H28 SING N N 69 VHJ C5 H29 SING N N 70 VHJ C6 H30 SING N N 71 VHJ C7 H31 SING N N 72 VHJ C7 H32 SING N N 73 VHJ N10 H33 SING N N 74 VHJ N13 H34 SING N N 75 VHJ N16 H35 SING N N 76 VHJ O1 H36 SING N N 77 VHJ C22 H37 SING N N 78 VHJ N23 H38 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHJ SMILES ACDLabs 12.01 "c1ccc(cc1)COC(NC(C(=O)NC(C(NC(CC2C(NCC2)=O)CO)=O)Cc3ccccc3)C(C)C)=O" VHJ InChI InChI 1.03 "InChI=1S/C29H38N4O6/c1-19(2)25(33-29(38)39-18-21-11-7-4-8-12-21)28(37)32-24(15-20-9-5-3-6-10-20)27(36)31-23(17-34)16-22-13-14-30-26(22)35/h3-12,19,22-25,34H,13-18H2,1-2H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t22-,23-,24-,25-/m0/s1" VHJ InChIKey InChI 1.03 AGWXCVPSNAWKHO-QORCZRPOSA-N VHJ SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O" VHJ SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CO)C[CH]3CCNC3=O" VHJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCc3ccccc3" VHJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(Cc1ccccc1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VHJ "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-phenylalaninamide" VHJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]amino]butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHJ "Create component" 2020-08-12 RCSB VHJ "Other modification" 2020-08-12 RCSB VHJ "Initial release" 2020-12-23 RCSB VHJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VHJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #