data_VHM # _chem_comp.id VHM _chem_comp.name "N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H44 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JQ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHM C1 C1 C 0 1 Y N N N N N 44.178 11.323 -17.296 9.484 -1.404 -1.120 C1 VHM 1 VHM C10 C2 C 0 1 N N N N N N 42.307 1.090 -17.514 -0.454 -3.036 1.916 C10 VHM 2 VHM C11 C3 C 0 1 N N S N N N 42.804 4.804 -14.290 1.593 1.661 0.359 C11 VHM 3 VHM C12 C4 C 0 1 N N N N N N 42.078 3.503 -14.299 0.370 0.842 0.036 C12 VHM 4 VHM C13 C5 C 0 1 N N N N N N 41.837 0.754 -18.925 0.764 -3.866 1.506 C13 VHM 5 VHM C14 C6 C 0 1 N N S N N N 42.255 1.124 -14.656 -1.942 0.200 0.458 C14 VHM 6 VHM C15 C7 C 0 1 N N N N N N 42.100 0.703 -13.228 -3.207 0.953 0.779 C15 VHM 7 VHM C16 C8 C 0 1 N N N N N N 42.517 -0.494 -19.483 0.559 -4.408 0.090 C16 VHM 8 VHM C17 C9 C 0 1 N N S N N N 40.687 -0.207 -11.499 -5.634 1.083 0.949 C17 VHM 9 VHM C18 C10 C 0 1 N N N N N N 43.939 -0.584 -18.971 0.387 -3.239 -0.883 C18 VHM 10 VHM C19 C11 C 0 1 N N N N N N 39.591 0.620 -10.830 -6.799 0.482 0.160 C19 VHM 11 VHM C2 C12 C 0 1 Y N N N N N 42.913 11.271 -17.854 9.173 -0.149 -1.609 C2 VHM 12 VHM C20 C13 C 0 1 N N S N N N 40.026 2.085 -10.743 -6.568 0.700 -1.337 C20 VHM 13 VHM C21 C14 C 0 1 N N N N N N 41.122 2.275 -9.703 -7.749 0.128 -2.156 C21 VHM 14 VHM C22 C15 C 0 1 N N N N N N 40.723 3.519 -8.910 -7.240 -1.291 -2.494 C22 VHM 15 VHM C23 C16 C 0 1 N N N N N N 43.878 -0.877 -17.477 -0.830 -2.408 -0.473 C23 VHM 16 VHM C24 C17 C 0 1 N N N N N N 38.931 2.984 -10.260 -5.370 -0.095 -1.808 C24 VHM 17 VHM C25 C18 C 0 1 N N N N N N 40.415 -1.714 -11.561 -5.924 0.977 2.447 C25 VHM 18 VHM C3 C19 C 0 1 Y N N N N N 42.286 10.058 -18.109 8.155 0.585 -1.031 C3 VHM 19 VHM C30 C20 C 0 1 N N N N N N 42.855 5.323 -12.871 1.486 3.028 -0.319 C30 VHM 20 VHM C31 C21 C 0 1 N N N N N N 43.218 6.800 -12.921 2.659 3.908 0.118 C31 VHM 21 VHM C32 C22 C 0 1 N N N N N N 43.797 4.496 -12.007 1.521 2.848 -1.838 C32 VHM 22 VHM C34 C23 C 0 1 N N N N N N 43.242 0.202 -15.357 -1.843 -1.037 1.354 C34 VHM 23 VHM C4 C24 C 0 1 Y N N N N N 42.932 8.868 -17.824 7.447 0.065 0.036 C4 VHM 24 VHM C5 C25 C 0 1 Y N N N N N 44.208 8.902 -17.276 7.757 -1.190 0.525 C5 VHM 25 VHM C6 C26 C 0 1 Y N N N N N 44.819 10.127 -17.024 8.776 -1.925 -0.052 C6 VHM 26 VHM C7 C27 C 0 1 N N N N N N 42.232 7.567 -18.141 6.338 0.866 0.667 C7 VHM 27 VHM C8 C28 C 0 1 N N N N N N 42.750 -0.155 -16.752 -0.625 -1.867 0.943 C8 VHM 28 VHM C9 C29 C 0 1 N N N N N N 42.302 5.910 -16.356 3.985 1.202 0.448 C9 VHM 29 VHM N10 N1 N 0 1 N N N N N N 42.079 5.774 -15.065 2.789 0.967 -0.127 N10 VHM 30 VHM N13 N2 N 0 1 N N N N N N 42.787 2.468 -14.717 -0.784 1.067 0.693 N13 VHM 31 VHM N16 N3 N 0 1 N N N N N N 40.897 0.276 -12.855 -4.404 0.351 0.637 N16 VHM 32 VHM N23 N4 N 0 1 N N N N N N 39.365 3.812 -9.315 -5.775 -1.200 -2.457 N23 VHM 33 VHM O26 O1 O 0 1 N N N N N N 37.798 2.939 -10.691 -4.213 0.220 -1.628 O26 VHM 34 VHM O27 O2 O 0 1 N N N N N N 40.196 -2.297 -10.275 -6.199 -0.385 2.784 O27 VHM 35 VHM O29 O3 O 0 1 N N N N N N 43.065 5.194 -16.989 4.072 1.990 1.369 O29 VHM 36 VHM O33 O4 O 0 1 N N N N N N 40.918 3.433 -13.938 0.425 -0.019 -0.817 O33 VHM 37 VHM O38 O5 O 0 1 N N N N N N 43.046 0.775 -12.459 -3.148 2.101 1.167 O38 VHM 38 VHM O8 O6 O 0 1 N N N N N N 41.592 6.979 -17.025 5.083 0.564 0.001 O8 VHM 39 VHM H1 H1 H 0 1 N N N N N N 44.651 12.269 -17.079 10.276 -1.980 -1.574 H1 VHM 40 VHM H2 H2 H 0 1 N N N N N N 43.154 1.788 -17.578 -1.346 -3.662 1.892 H2 VHM 41 VHM H3 H3 H 0 1 N N N N N N 41.480 1.566 -16.967 -0.308 -2.650 2.925 H3 VHM 42 VHM H4 H4 H 0 1 N N N N N N 43.825 4.673 -14.678 1.665 1.796 1.439 H4 VHM 43 VHM H5 H5 H 0 1 N N N N N N 42.063 1.605 -19.585 1.656 -3.240 1.530 H5 VHM 44 VHM H6 H6 H 0 1 N N N N N N 40.750 0.585 -18.905 0.886 -4.699 2.199 H6 VHM 45 VHM H7 H7 H 0 1 N N N N N N 41.282 1.073 -15.166 -1.958 -0.109 -0.587 H7 VHM 46 VHM H8 H8 H 0 1 N N N N N N 42.528 -0.442 -20.582 1.426 -4.999 -0.202 H8 VHM 47 VHM H9 H9 H 0 1 N N N N N N 41.958 -1.386 -19.164 -0.333 -5.034 0.066 H9 VHM 48 VHM H10 H10 H 0 1 N N N N N N 41.614 -0.059 -10.926 -5.512 2.131 0.676 H10 VHM 49 VHM H11 H11 H 0 1 N N N N N N 44.473 -1.394 -19.490 1.279 -2.613 -0.859 H11 VHM 50 VHM H12 H12 H 0 1 N N N N N N 44.460 0.369 -19.145 0.241 -3.625 -1.892 H12 VHM 51 VHM H13 H13 H 0 1 N N N N N N 38.667 0.548 -11.422 -6.865 -0.586 0.366 H13 VHM 52 VHM H14 H14 H 0 1 N N N N N N 39.408 0.233 -9.817 -7.729 0.968 0.458 H14 VHM 53 VHM H15 H15 H 0 1 N N N N N N 42.403 12.192 -18.096 9.726 0.257 -2.443 H15 VHM 54 VHM H16 H16 H 0 1 N N N N N N 40.385 2.422 -11.726 -6.431 1.760 -1.551 H16 VHM 55 VHM H17 H17 H 0 1 N N N N N N 41.179 1.399 -9.040 -8.656 0.083 -1.553 H17 VHM 56 VHM H18 H18 H 0 1 N N N N N N 42.095 2.428 -10.193 -7.912 0.710 -3.062 H18 VHM 57 VHM H19 H19 H 0 1 N N N N N N 40.768 3.318 -7.830 -7.592 -2.005 -1.750 H19 VHM 58 VHM H20 H20 H 0 1 N N N N N N 41.388 4.361 -9.154 -7.576 -1.585 -3.488 H20 VHM 59 VHM H21 H21 H 0 1 N N N N N N 43.739 -1.960 -17.342 -0.952 -1.576 -1.166 H21 VHM 60 VHM H22 H22 H 0 1 N N N N N N 44.833 -0.570 -17.025 -1.722 -3.035 -0.497 H22 VHM 61 VHM H23 H23 H 0 1 N N N N N N 39.521 -1.883 -12.179 -5.058 1.323 3.011 H23 VHM 62 VHM H24 H24 H 0 1 N N N N N N 41.281 -2.207 -12.026 -6.788 1.593 2.695 H24 VHM 63 VHM H25 H25 H 0 1 N N N N N N 41.292 10.044 -18.531 7.913 1.566 -1.413 H25 VHM 64 VHM H26 H26 H 0 1 N N N N N N 41.845 5.239 -12.443 0.549 3.504 -0.031 H26 VHM 65 VHM H27 H27 H 0 1 N N N N N N 43.262 7.202 -11.898 3.590 3.490 -0.267 H27 VHM 66 VHM H28 H28 H 0 1 N N N N N N 44.199 6.920 -13.404 2.524 4.915 -0.276 H28 VHM 67 VHM H29 H29 H 0 1 N N N N N N 42.456 7.345 -13.497 2.700 3.945 1.206 H29 VHM 68 VHM H30 H30 H 0 1 N N N N N N 43.809 4.901 -10.985 0.685 2.221 -2.149 H30 VHM 69 VHM H31 H31 H 0 1 N N N N N N 43.451 3.452 -11.983 1.445 3.822 -2.321 H31 VHM 70 VHM H32 H32 H 0 1 N N N N N N 44.812 4.537 -12.429 2.459 2.372 -2.126 H32 VHM 71 VHM H33 H33 H 0 1 N N N N N N 43.356 -0.720 -14.768 -1.737 -0.725 2.393 H33 VHM 72 VHM H34 H34 H 0 1 N N N N N N 44.215 0.709 -15.436 -2.746 -1.638 1.244 H34 VHM 73 VHM H35 H35 H 0 1 N N N N N N 44.724 7.981 -17.046 7.204 -1.597 1.359 H35 VHM 74 VHM H36 H36 H 0 1 N N N N N N 45.815 10.145 -16.607 9.015 -2.907 0.327 H36 VHM 75 VHM H37 H37 H 0 1 N N N N N N 41.474 7.760 -18.914 6.259 0.609 1.723 H37 VHM 76 VHM H38 H38 H 0 1 N N N N N N 42.978 6.857 -18.528 6.555 1.930 0.567 H38 VHM 77 VHM H39 H39 H 0 1 N N N N N N 41.893 -0.838 -16.662 0.267 -1.241 0.967 H39 VHM 78 VHM H40 H40 H 0 1 N N N N N N 41.397 6.353 -14.618 2.719 0.338 -0.862 H40 VHM 79 VHM H41 H41 H 0 1 N N N N N N 43.706 2.617 -15.081 -0.849 1.802 1.322 H41 VHM 80 VHM H42 H42 H 0 1 N N N N N N 40.138 0.287 -13.506 -4.452 -0.567 0.327 H42 VHM 81 VHM H43 H43 H 0 1 N N N N N N 38.816 4.553 -8.928 -5.176 -1.854 -2.850 H43 VHM 82 VHM H44 H44 H 0 1 N N N N N N 40.033 -3.228 -10.372 -6.392 -0.527 3.721 H44 VHM 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHM C16 C18 SING N N 1 VHM C16 C13 SING N N 2 VHM C18 C23 SING N N 3 VHM C13 C10 SING N N 4 VHM C7 C4 SING N N 5 VHM C7 O8 SING N N 6 VHM C3 C2 DOUB Y N 7 VHM C3 C4 SING Y N 8 VHM C2 C1 SING Y N 9 VHM C4 C5 DOUB Y N 10 VHM C10 C8 SING N N 11 VHM C23 C8 SING N N 12 VHM C1 C6 DOUB Y N 13 VHM C5 C6 SING Y N 14 VHM O8 C9 SING N N 15 VHM O29 C9 DOUB N N 16 VHM C8 C34 SING N N 17 VHM C9 N10 SING N N 18 VHM C34 C14 SING N N 19 VHM N10 C11 SING N N 20 VHM N13 C14 SING N N 21 VHM N13 C12 SING N N 22 VHM C14 C15 SING N N 23 VHM C12 C11 SING N N 24 VHM C12 O33 DOUB N N 25 VHM C11 C30 SING N N 26 VHM C15 N16 SING N N 27 VHM C15 O38 DOUB N N 28 VHM C31 C30 SING N N 29 VHM C30 C32 SING N N 30 VHM N16 C17 SING N N 31 VHM C25 C17 SING N N 32 VHM C25 O27 SING N N 33 VHM C17 C19 SING N N 34 VHM C19 C20 SING N N 35 VHM C20 C24 SING N N 36 VHM C20 C21 SING N N 37 VHM O26 C24 DOUB N N 38 VHM C24 N23 SING N N 39 VHM C21 C22 SING N N 40 VHM N23 C22 SING N N 41 VHM C1 H1 SING N N 42 VHM C10 H2 SING N N 43 VHM C10 H3 SING N N 44 VHM C11 H4 SING N N 45 VHM C13 H5 SING N N 46 VHM C13 H6 SING N N 47 VHM C14 H7 SING N N 48 VHM C16 H8 SING N N 49 VHM C16 H9 SING N N 50 VHM C17 H10 SING N N 51 VHM C18 H11 SING N N 52 VHM C18 H12 SING N N 53 VHM C19 H13 SING N N 54 VHM C19 H14 SING N N 55 VHM C2 H15 SING N N 56 VHM C20 H16 SING N N 57 VHM C21 H17 SING N N 58 VHM C21 H18 SING N N 59 VHM C22 H19 SING N N 60 VHM C22 H20 SING N N 61 VHM C23 H21 SING N N 62 VHM C23 H22 SING N N 63 VHM C25 H23 SING N N 64 VHM C25 H24 SING N N 65 VHM C3 H25 SING N N 66 VHM C30 H26 SING N N 67 VHM C31 H27 SING N N 68 VHM C31 H28 SING N N 69 VHM C31 H29 SING N N 70 VHM C32 H30 SING N N 71 VHM C32 H31 SING N N 72 VHM C32 H32 SING N N 73 VHM C34 H33 SING N N 74 VHM C34 H34 SING N N 75 VHM C5 H35 SING N N 76 VHM C6 H36 SING N N 77 VHM C7 H37 SING N N 78 VHM C7 H38 SING N N 79 VHM C8 H39 SING N N 80 VHM N10 H40 SING N N 81 VHM N13 H41 SING N N 82 VHM N16 H42 SING N N 83 VHM N23 H43 SING N N 84 VHM O27 H44 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHM SMILES ACDLabs 12.01 "c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CC2C(NCC2)=O)CO)=O)CC3CCCCC3)=O" VHM InChI InChI 1.03 "InChI=1S/C29H44N4O6/c1-19(2)25(33-29(38)39-18-21-11-7-4-8-12-21)28(37)32-24(15-20-9-5-3-6-10-20)27(36)31-23(17-34)16-22-13-14-30-26(22)35/h4,7-8,11-12,19-20,22-25,34H,3,5-6,9-10,13-18H2,1-2H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t22-,23-,24-,25-/m0/s1" VHM InChIKey InChI 1.03 LMWONCCZCSKLCL-QORCZRPOSA-N VHM SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O" VHM SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(=O)N[CH](CO)C[CH]3CCNC3=O" VHM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCc3ccccc3" VHM SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VHM "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" VHM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHM "Create component" 2020-08-12 RCSB VHM "Initial release" 2020-12-23 RCSB VHM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VHM _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #