data_VHP # _chem_comp.id VHP _chem_comp.name "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H46 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 562.698 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JQ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHP C1 C1 C 0 1 Y N N N N N 44.507 10.094 -17.242 9.538 -1.379 -1.800 C1 VHP 1 VHP C10 C2 C 0 1 N N N N N N 44.930 7.137 -12.351 -0.972 3.134 -0.099 C10 VHP 2 VHP C11 C3 C 0 1 N N S N N N 42.581 4.129 -15.005 1.653 0.567 0.999 C11 VHP 3 VHP C12 C4 C 0 1 N N N N N N 41.821 2.893 -14.703 0.422 -0.034 0.372 C12 VHP 4 VHP C13 C5 C 0 1 N N N N N N 42.502 6.642 -11.909 0.414 4.116 -1.931 C13 VHP 5 VHP C14 C6 C 0 1 N N S N N N 41.521 0.604 -15.157 -1.916 -0.714 0.485 C14 VHP 6 VHP C15 C7 C 0 1 N N N N N N 41.958 0.068 -13.816 -3.173 -0.091 1.033 C15 VHP 7 VHP C16 C8 C 0 1 N N N N N N 43.119 8.218 -13.773 0.836 4.770 0.444 C16 VHP 8 VHP C17 C9 C 0 1 N N S N N N 41.029 -0.642 -11.605 -5.601 0.044 1.189 C17 VHP 9 VHP C18 C10 C 0 1 N N N N N N 43.923 3.715 -12.962 2.813 2.705 1.572 C18 VHP 10 VHP C19 C11 C 0 1 N N N N N N 39.876 0.080 -10.895 -6.755 -0.192 0.212 C19 VHP 11 VHP C2 C12 C 0 1 Y N N N N N 43.162 10.105 -16.883 9.267 -0.072 -1.438 C2 VHP 12 VHP C20 C13 C 0 1 N N S N N N 40.145 1.581 -10.892 -6.474 0.548 -1.098 C20 VHP 13 VHP C21 C14 C 0 1 N N N N N N 41.438 1.845 -10.123 -7.641 0.350 -2.092 C21 VHP 14 VHP C22 C15 C 0 1 N N N N N N 41.082 2.500 -8.784 -7.153 -0.863 -2.914 C22 VHP 15 VHP C24 C16 C 0 1 N N N N N N 39.129 2.361 -10.126 -5.280 -0.058 -1.802 C24 VHP 16 VHP C27 C17 C 0 1 N N N N N N 40.761 -2.145 -11.704 -5.939 -0.591 2.539 C27 VHP 17 VHP C3 C18 C 0 1 Y N N N N N 42.286 9.160 -17.396 8.233 0.202 -0.562 C3 VHP 18 VHP C30 C19 C 0 1 N N R N N N 42.968 4.695 -13.653 1.537 2.093 0.990 C30 VHP 19 VHP C34 C20 C 0 1 N N N N N N 41.891 -0.247 -16.363 -1.870 -2.194 0.869 C34 VHP 20 VHP C35 C21 C 0 1 N N N N N N 41.334 0.251 -17.702 -0.659 -2.856 0.209 C35 VHP 21 VHP C36 C22 C 0 1 N N N N N N 41.513 -0.797 -18.779 -0.542 -4.303 0.692 C36 VHP 22 VHP C37 C23 C 0 1 N N N N N N 39.846 0.436 -17.682 -0.833 -2.838 -1.311 C37 VHP 23 VHP C4 C24 C 0 1 Y N N N N N 42.759 8.203 -18.278 7.470 -0.831 -0.048 C4 VHP 24 VHP C5 C25 C 0 1 Y N N N N N 44.112 8.182 -18.622 7.741 -2.137 -0.411 C5 VHP 25 VHP C6 C26 C 0 1 Y N N N N N 44.997 9.129 -18.115 8.771 -2.410 -1.291 C6 VHP 26 VHP C7 C27 C 0 1 N N N N N N 41.796 7.169 -18.817 6.344 -0.532 0.907 C7 VHP 27 VHP C8 C28 C 0 1 N N N N N N 43.535 6.985 -12.979 0.426 3.623 -0.482 C8 VHP 28 VHP C9 C29 C 0 1 N N N N N N 42.212 5.596 -16.928 4.008 -0.043 0.870 C9 VHP 29 VHP N10 N1 N 0 1 N N N N N N 41.755 4.997 -15.833 2.836 0.163 0.237 N10 VHP 30 VHP N13 N2 N 0 1 N N N N N N 42.214 1.841 -15.399 -0.748 -0.029 1.043 N13 VHP 31 VHP N16 N3 N 0 1 N N N N N N 40.932 -0.148 -12.981 -4.378 -0.562 0.656 N16 VHP 32 VHP N23 N4 N 0 1 N N N N N N 39.691 2.842 -9.026 -5.688 -0.838 -2.817 N23 VHP 33 VHP O26 O1 O 0 1 N N N N N N 37.981 2.531 -10.494 -4.122 0.134 -1.496 O26 VHP 34 VHP O28 O2 O 0 1 N N N N N N 40.554 -2.760 -10.426 -6.252 -1.973 2.351 O28 VHP 35 VHP O29 O3 O 0 1 N N N N N N 43.376 5.481 -17.287 4.064 0.024 2.082 O29 VHP 36 VHP O32 O4 O 0 1 N N N N N N 43.620 5.924 -13.912 1.359 2.549 -0.352 O32 VHP 37 VHP O33 O5 O 0 1 N N N N N N 40.922 2.897 -13.870 0.483 -0.523 -0.736 O33 VHP 38 VHP O38 O6 O 0 1 N N N N N N 43.145 -0.102 -13.542 -3.101 0.835 1.813 O38 VHP 39 VHP O8 O7 O 0 1 N N N N N N 41.303 6.426 -17.708 5.117 -0.322 0.159 O8 VHP 40 VHP H1 H1 H 0 1 N N N N N N 45.175 10.841 -16.839 10.346 -1.593 -2.484 H1 VHP 41 VHP H2 H2 H 0 1 N N N N N N 44.914 7.954 -11.615 -1.679 3.961 -0.170 H2 VHP 42 VHP H3 H3 H 0 1 N N N N N N 45.211 6.198 -11.851 -1.277 2.336 -0.776 H3 VHP 43 VHP H4 H4 H 0 1 N N N N N N 45.663 7.367 -13.138 -0.957 2.757 0.924 H4 VHP 44 VHP H5 H5 H 0 1 N N N N N N 43.498 3.864 -15.552 1.746 0.216 2.027 H5 VHP 45 VHP H6 H6 H 0 1 N N N N N N 42.436 7.467 -11.184 1.410 4.465 -2.204 H6 VHP 46 VHP H7 H7 H 0 1 N N N N N N 41.521 6.491 -12.382 0.121 3.299 -2.590 H7 VHP 47 VHP H8 H8 H 0 1 N N N N N N 42.804 5.721 -11.389 -0.298 4.936 -2.030 H8 VHP 48 VHP H9 H9 H 0 1 N N N N N N 40.433 0.768 -15.149 -1.907 -0.621 -0.601 H9 VHP 49 VHP H10 H10 H 0 1 N N N N N N 43.036 9.080 -13.095 0.769 4.442 1.481 H10 VHP 50 VHP H11 H11 H 0 1 N N N N N N 43.874 8.429 -14.544 1.862 5.066 0.222 H11 VHP 51 VHP H12 H12 H 0 1 N N N N N N 42.146 8.034 -14.253 0.171 5.619 0.287 H12 VHP 52 VHP H13 H13 H 0 1 N N N N N N 42.001 -0.426 -11.137 -5.449 1.115 1.319 H13 VHP 53 VHP H14 H14 H 0 1 N N N N N N 44.211 4.115 -11.979 3.652 2.492 0.910 H14 VHP 54 VHP H15 H15 H 0 1 N N N N N N 43.421 2.745 -12.830 2.688 3.784 1.665 H15 VHP 55 VHP H16 H16 H 0 1 N N N N N N 44.822 3.581 -13.581 3.007 2.275 2.555 H16 VHP 56 VHP H17 H17 H 0 1 N N N N N N 38.934 -0.123 -11.425 -6.850 -1.260 0.013 H17 VHP 57 VHP H18 H18 H 0 1 N N N N N N 39.799 -0.281 -9.859 -7.682 0.180 0.648 H18 VHP 58 VHP H19 H19 H 0 1 N N N N N N 42.797 10.857 -16.199 9.863 0.734 -1.839 H19 VHP 59 VHP H20 H20 H 0 1 N N N N N N 40.230 1.956 -11.922 -6.307 1.608 -0.907 H20 VHP 60 VHP H21 H21 H 0 1 N N N N N N 41.964 0.895 -9.944 -8.567 0.118 -1.566 H21 VHP 61 VHP H22 H22 H 0 1 N N N N N N 42.085 2.518 -10.705 -7.765 1.227 -2.728 H22 VHP 62 VHP H23 H23 H 0 1 N N N N N N 41.188 1.796 -7.945 -7.543 -1.788 -2.489 H23 VHP 63 VHP H24 H24 H 0 1 N N N N N N 41.694 3.394 -8.592 -7.465 -0.765 -3.954 H24 VHP 64 VHP H25 H25 H 0 1 N N N N N N 39.862 -2.302 -12.319 -5.082 -0.501 3.207 H25 VHP 65 VHP H26 H26 H 0 1 N N N N N N 41.624 -2.624 -12.188 -6.796 -0.080 2.977 H26 VHP 66 VHP H27 H27 H 0 1 N N N N N N 41.245 9.170 -17.110 8.021 1.222 -0.279 H27 VHP 67 VHP H28 H28 H 0 1 N N N N N N 42.070 4.838 -13.034 0.681 2.395 1.593 H28 VHP 68 VHP H29 H29 H 0 1 N N N N N N 41.510 -1.265 -16.192 -1.789 -2.286 1.952 H29 VHP 69 VHP H30 H30 H 0 1 N N N N N N 42.988 -0.274 -16.438 -2.782 -2.686 0.530 H30 VHP 70 VHP H31 H31 H 0 1 N N N N N N 41.834 1.186 -17.993 0.245 -2.309 0.478 H31 VHP 71 VHP H32 H32 H 0 1 N N N N N N 42.583 -1.026 -18.894 0.321 -4.775 0.222 H32 VHP 72 VHP H33 H33 H 0 1 N N N N N N 40.971 -1.711 -18.495 -0.418 -4.316 1.775 H33 VHP 73 VHP H34 H34 H 0 1 N N N N N N 41.115 -0.416 -19.731 -1.446 -4.850 0.424 H34 VHP 74 VHP H35 H35 H 0 1 N N N N N N 39.580 1.188 -16.925 -1.737 -3.385 -1.579 H35 VHP 75 VHP H36 H36 H 0 1 N N N N N N 39.505 0.775 -18.671 -0.916 -1.807 -1.655 H36 VHP 76 VHP H37 H37 H 0 1 N N N N N N 39.361 -0.520 -17.435 0.030 -3.309 -1.781 H37 VHP 77 VHP H38 H38 H 0 1 N N N N N N 44.478 7.418 -19.292 7.146 -2.943 -0.009 H38 VHP 78 VHP H39 H39 H 0 1 N N N N N N 46.040 9.115 -18.393 8.983 -3.431 -1.574 H39 VHP 79 VHP H40 H40 H 0 1 N N N N N N 40.963 7.666 -19.337 6.214 -1.372 1.590 H40 VHP 80 VHP H41 H41 H 0 1 N N N N N N 42.317 6.499 -19.517 6.580 0.367 1.477 H41 VHP 81 VHP H42 H42 H 0 1 N N N N N N 40.803 5.149 -15.566 2.777 0.043 -0.724 H42 VHP 82 VHP H43 H43 H 0 1 N N N N N N 42.959 1.902 -16.063 -0.815 0.429 1.895 H43 VHP 83 VHP H44 H44 H 0 1 N N N N N N 40.015 0.046 -13.330 -4.436 -1.303 0.032 H44 VHP 84 VHP H45 H45 H 0 1 N N N N N N 39.178 3.417 -8.389 -5.092 -1.322 -3.410 H45 VHP 85 VHP H46 H46 H 0 1 N N N N N N 40.393 -3.689 -10.543 -6.477 -2.440 3.167 H46 VHP 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHP C7 C4 SING N N 1 VHP C7 O8 SING N N 2 VHP C36 C35 SING N N 3 VHP C5 C4 DOUB Y N 4 VHP C5 C6 SING Y N 5 VHP C4 C3 SING Y N 6 VHP C6 C1 DOUB Y N 7 VHP O8 C9 SING N N 8 VHP C35 C37 SING N N 9 VHP C35 C34 SING N N 10 VHP C3 C2 DOUB Y N 11 VHP O29 C9 DOUB N N 12 VHP C1 C2 SING Y N 13 VHP C9 N10 SING N N 14 VHP C34 C14 SING N N 15 VHP N10 C11 SING N N 16 VHP N13 C14 SING N N 17 VHP N13 C12 SING N N 18 VHP C14 C15 SING N N 19 VHP C11 C12 SING N N 20 VHP C11 C30 SING N N 21 VHP C12 O33 DOUB N N 22 VHP O32 C30 SING N N 23 VHP O32 C8 SING N N 24 VHP C15 O38 DOUB N N 25 VHP C15 N16 SING N N 26 VHP C16 C8 SING N N 27 VHP C30 C18 SING N N 28 VHP N16 C17 SING N N 29 VHP C8 C10 SING N N 30 VHP C8 C13 SING N N 31 VHP C27 C17 SING N N 32 VHP C27 O28 SING N N 33 VHP C17 C19 SING N N 34 VHP C19 C20 SING N N 35 VHP C20 C24 SING N N 36 VHP C20 C21 SING N N 37 VHP O26 C24 DOUB N N 38 VHP C24 N23 SING N N 39 VHP C21 C22 SING N N 40 VHP N23 C22 SING N N 41 VHP C1 H1 SING N N 42 VHP C10 H2 SING N N 43 VHP C10 H3 SING N N 44 VHP C10 H4 SING N N 45 VHP C11 H5 SING N N 46 VHP C13 H6 SING N N 47 VHP C13 H7 SING N N 48 VHP C13 H8 SING N N 49 VHP C14 H9 SING N N 50 VHP C16 H10 SING N N 51 VHP C16 H11 SING N N 52 VHP C16 H12 SING N N 53 VHP C17 H13 SING N N 54 VHP C18 H14 SING N N 55 VHP C18 H15 SING N N 56 VHP C18 H16 SING N N 57 VHP C19 H17 SING N N 58 VHP C19 H18 SING N N 59 VHP C2 H19 SING N N 60 VHP C20 H20 SING N N 61 VHP C21 H21 SING N N 62 VHP C21 H22 SING N N 63 VHP C22 H23 SING N N 64 VHP C22 H24 SING N N 65 VHP C27 H25 SING N N 66 VHP C27 H26 SING N N 67 VHP C3 H27 SING N N 68 VHP C30 H28 SING N N 69 VHP C34 H29 SING N N 70 VHP C34 H30 SING N N 71 VHP C35 H31 SING N N 72 VHP C36 H32 SING N N 73 VHP C36 H33 SING N N 74 VHP C36 H34 SING N N 75 VHP C37 H35 SING N N 76 VHP C37 H36 SING N N 77 VHP C37 H37 SING N N 78 VHP C5 H38 SING N N 79 VHP C6 H39 SING N N 80 VHP C7 H40 SING N N 81 VHP C7 H41 SING N N 82 VHP N10 H42 SING N N 83 VHP N13 H43 SING N N 84 VHP N16 H44 SING N N 85 VHP N23 H45 SING N N 86 VHP O28 H46 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHP SMILES ACDLabs 12.01 "c1ccc(cc1)COC(NC(C(=O)NC(C(=O)NC(CC2C(NCC2)=O)CO)CC(C)C)C(C)OC(C)(C)C)=O" VHP InChI InChI 1.03 "InChI=1S/C29H46N4O7/c1-18(2)14-23(26(36)31-22(16-34)15-21-12-13-30-25(21)35)32-27(37)24(19(3)40-29(4,5)6)33-28(38)39-17-20-10-8-7-9-11-20/h7-11,18-19,21-24,34H,12-17H2,1-6H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t19-,21+,22+,23+,24+/m1/s1" VHP InChIKey InChI 1.03 AWESOLQTDOBPDY-FFYZIMEISA-N VHP SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)[C@@H](C)OC(C)(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" VHP SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)[CH](C)OC(C)(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O" VHP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C" VHP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VHP "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" VHP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHP "Create component" 2020-08-13 RCSB VHP "Modify coordinates" 2020-08-20 RCSB VHP "Initial release" 2020-12-23 RCSB VHP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VHP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #