data_VHU # _chem_comp.id VHU _chem_comp.name "(4M)-4-(2-{4-[(3S)-1-acetylpiperidine-3-carbonyl]piperazine-1-carbonyl}-1-benzofuran-7-yl)-1H-isoindol-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H28 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-12 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.556 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VHU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U4W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VHU N1 N1 N 0 1 N N N N N N 31.518 -27.766 -1.213 -6.711 0.133 -0.483 N1 VHU 1 VHU N3 N2 N 0 1 N N N N N N 25.003 -28.889 -4.513 -0.407 -1.513 0.803 N3 VHU 2 VHU C4 C1 C 0 1 N N N N N N 30.924 -29.867 -2.312 -6.597 2.363 0.501 C4 VHU 3 VHU C5 C2 C 0 1 N N N N N N 29.903 -29.082 -3.142 -5.160 2.453 -0.017 C5 VHU 4 VHU C6 C3 C 0 1 N N S N N N 29.403 -27.863 -2.360 -4.517 1.069 0.032 C6 VHU 5 VHU C7 C4 C 0 1 N N N N N N 30.604 -26.968 -2.045 -5.296 0.115 -0.878 C7 VHU 6 VHU C8 C5 C 0 1 N N N N N N 28.397 -27.119 -3.203 -3.091 1.161 -0.447 C8 VHU 7 VHU C10 C6 C 0 1 N N N N N N 25.853 -29.619 -3.548 0.063 -0.268 0.178 C10 VHU 8 VHU C13 C7 C 0 1 N N N N N N 23.722 -29.233 -4.830 0.398 -2.592 0.872 C13 VHU 9 VHU C15 C8 C 0 1 Y N N N N N 23.358 -31.563 -3.816 2.663 -3.535 0.340 C15 VHU 10 VHU C17 C9 C 0 1 Y N N N N N 21.091 -31.361 -3.581 3.703 -1.587 -0.254 C17 VHU 11 VHU C20 C10 C 0 1 Y N N N N N 20.598 -33.857 -2.467 6.209 -2.678 -0.828 C20 VHU 12 VHU C21 C11 C 0 1 Y N N N N N 21.890 -33.507 -2.796 5.190 -3.504 -0.406 C21 VHU 13 VHU C22 C12 C 0 1 Y N N N N N 18.660 -30.784 -3.496 4.537 0.694 -0.837 C22 VHU 14 VHU C24 C13 C 0 1 Y N N N N N 16.450 -30.446 -4.413 4.393 2.632 -2.251 C24 VHU 15 VHU C26 C14 C 0 1 Y N N N N N 17.626 -28.600 -3.417 4.069 2.878 0.115 C26 VHU 16 VHU C28 C15 C 0 1 N N N N N N 19.741 -28.566 -2.456 4.136 1.236 1.720 C28 VHU 17 VHU C1 C16 C 0 1 N N N N N N 32.698 -28.163 1.002 -6.669 -2.338 -0.393 C1 VHU 18 VHU C2 C17 C 0 1 N N N N N N 31.776 -27.403 0.073 -7.358 -1.013 -0.194 C2 VHU 19 VHU O1 O1 O 0 1 N N N N N N 31.242 -26.406 0.517 -8.495 -0.978 0.225 O1 VHU 20 VHU C3 C18 C 0 1 N N N N N N 32.081 -28.951 -1.891 -7.404 1.426 -0.403 C3 VHU 21 VHU O2 O2 O 0 1 N N N N N N 28.776 -26.151 -3.835 -2.667 2.205 -0.895 O2 VHU 22 VHU N2 N3 N 0 1 N N N N N N 27.096 -27.502 -3.287 -2.286 0.082 -0.379 N2 VHU 23 VHU C9 C19 C 0 1 N N N N N N 26.528 -28.654 -2.564 -0.924 0.128 -0.927 C9 VHU 24 VHU C11 C20 C 0 1 N N N N N N 25.615 -27.726 -5.185 -1.768 -1.558 1.355 C11 VHU 25 VHU C12 C21 C 0 1 N N N N N N 26.144 -26.759 -4.126 -2.758 -1.158 0.254 C12 VHU 26 VHU O3 O3 O 0 1 N N N N N N 23.119 -28.553 -5.641 -0.036 -3.649 1.288 O3 VHU 27 VHU C14 C22 C 0 1 Y N N N N N 22.948 -30.346 -4.259 1.800 -2.491 0.444 C14 VHU 28 VHU C16 C23 C 0 1 Y N N N N N 22.150 -32.254 -3.358 3.932 -2.967 -0.116 C16 VHU 29 VHU O4 O4 O 0 1 Y N N N N N 21.617 -30.257 -4.118 2.426 -1.348 0.094 O4 VHU 30 VHU C18 C24 C 0 1 Y N N N N N 19.783 -31.721 -3.239 4.753 -0.760 -0.685 C18 VHU 31 VHU C19 C25 C 0 1 Y N N N N N 19.549 -32.976 -2.689 5.997 -1.316 -0.968 C19 VHU 32 VHU C23 C26 C 0 1 Y N N N N N 17.520 -31.279 -4.141 4.591 1.291 -2.109 C23 VHU 33 VHU C25 C27 C 0 1 Y N N N N N 16.493 -29.113 -4.057 4.133 3.437 -1.140 C25 VHU 34 VHU C27 C28 C 0 1 Y N N N N N 18.713 -29.437 -3.140 4.272 1.489 0.281 C27 VHU 35 VHU N4 N4 N 0 1 N N N N N N 19.168 -27.222 -2.387 3.879 2.359 2.339 N4 VHU 36 VHU C29 C29 C 0 1 N N N N N N 17.945 -27.246 -2.937 3.817 3.397 1.484 C29 VHU 37 VHU O5 O5 O 0 1 N N N N N N 17.212 -26.282 -3.036 3.595 4.554 1.780 O5 VHU 38 VHU H1 H1 H 0 1 N N N N N N 30.431 -30.267 -1.413 -6.594 1.973 1.519 H1 VHU 39 VHU H2 H2 H 0 1 N N N N N N 31.319 -30.698 -2.914 -7.050 3.355 0.493 H2 VHU 40 VHU H3 H3 H 0 1 N N N N N N 29.050 -29.735 -3.380 -5.161 2.817 -1.044 H3 VHU 41 VHU H4 H4 H 0 1 N N N N N N 30.377 -28.744 -4.075 -4.593 3.139 0.611 H4 VHU 42 VHU H5 H5 H 0 1 N N N N N N 28.933 -28.194 -1.422 -4.534 0.696 1.056 H5 VHU 43 VHU H6 H6 H 0 1 N N N N N N 31.106 -26.665 -2.976 -4.900 -0.896 -0.772 H6 VHU 44 VHU H7 H7 H 0 1 N N N N N N 30.276 -26.073 -1.497 -5.201 0.439 -1.915 H7 VHU 45 VHU H8 H8 H 0 1 N N N N N N 25.229 -30.328 -2.984 0.110 0.522 0.928 H8 VHU 46 VHU H9 H9 H 0 1 N N N N N N 26.629 -30.171 -4.099 1.052 -0.426 -0.253 H9 VHU 47 VHU H10 H10 H 0 1 N N N N N N 24.369 -31.944 -3.804 2.456 -4.573 0.556 H10 VHU 48 VHU H11 H11 H 0 1 N N N N N N 20.400 -34.826 -2.032 7.180 -3.095 -1.050 H11 VHU 49 VHU H12 H12 H 0 1 N N N N N N 22.700 -34.200 -2.620 5.362 -4.564 -0.299 H12 VHU 50 VHU H13 H13 H 0 1 N N N N N N 15.575 -30.841 -4.907 4.438 3.077 -3.234 H13 VHU 51 VHU H14 H14 H 0 1 N N N N N N 20.709 -28.875 -2.090 4.232 0.270 2.195 H14 VHU 52 VHU H15 H15 H 0 1 N N N N N N 32.733 -27.658 1.979 -6.188 -2.641 0.537 H15 VHU 53 VHU H16 H16 H 0 1 N N N N N N 32.322 -29.189 1.133 -7.404 -3.089 -0.684 H16 VHU 54 VHU H17 H17 H 0 1 N N N N N N 33.709 -28.195 0.570 -5.917 -2.243 -1.176 H17 VHU 55 VHU H18 H18 H 0 1 N N N N N N 32.749 -29.490 -1.203 -7.486 1.860 -1.399 H18 VHU 56 VHU H19 H19 H 0 1 N N N N N N 32.647 -28.636 -2.780 -8.400 1.281 0.017 H19 VHU 57 VHU H20 H20 H 0 1 N N N N N N 25.783 -28.296 -1.838 -0.702 1.139 -1.270 H20 VHU 58 VHU H21 H21 H 0 1 N N N N N N 27.333 -29.182 -2.032 -0.840 -0.570 -1.760 H21 VHU 59 VHU H22 H22 H 0 1 N N N N N N 26.445 -28.064 -5.823 -1.990 -2.569 1.698 H22 VHU 60 VHU H23 H23 H 0 1 N N N N N N 24.860 -27.218 -5.803 -1.847 -0.861 2.190 H23 VHU 61 VHU H24 H24 H 0 1 N N N N N N 26.652 -25.912 -4.611 -3.744 -0.999 0.690 H24 VHU 62 VHU H25 H25 H 0 1 N N N N N N 25.313 -26.385 -3.510 -2.809 -1.947 -0.496 H25 VHU 63 VHU H26 H26 H 0 1 N N N N N N 18.542 -33.268 -2.432 6.805 -0.681 -1.299 H26 VHU 64 VHU H27 H27 H 0 1 N N N N N N 17.476 -32.319 -4.428 4.792 0.683 -2.979 H27 VHU 65 VHU H28 H28 H 0 1 N N N N N N 15.654 -28.468 -4.272 3.978 4.498 -1.267 H28 VHU 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VHU O3 C13 DOUB N N 1 VHU C11 N3 SING N N 2 VHU C11 C12 SING N N 3 VHU C13 N3 SING N N 4 VHU C13 C14 SING N N 5 VHU N3 C10 SING N N 6 VHU C24 C23 DOUB Y N 7 VHU C24 C25 SING Y N 8 VHU C14 O4 SING Y N 9 VHU C14 C15 DOUB Y N 10 VHU C23 C22 SING Y N 11 VHU C12 N2 SING N N 12 VHU O4 C17 SING Y N 13 VHU C25 C26 DOUB Y N 14 VHU O2 C8 DOUB N N 15 VHU C15 C16 SING Y N 16 VHU C17 C16 DOUB Y N 17 VHU C17 C18 SING Y N 18 VHU C10 C9 SING N N 19 VHU C22 C18 SING N N 20 VHU C22 C27 DOUB Y N 21 VHU C26 C27 SING Y N 22 VHU C26 C29 SING N N 23 VHU C16 C21 SING Y N 24 VHU N2 C8 SING N N 25 VHU N2 C9 SING N N 26 VHU C18 C19 DOUB Y N 27 VHU C8 C6 SING N N 28 VHU C5 C6 SING N N 29 VHU C5 C4 SING N N 30 VHU C27 C28 SING N N 31 VHU O5 C29 DOUB N N 32 VHU C29 N4 SING N N 33 VHU C21 C20 DOUB Y N 34 VHU C19 C20 SING Y N 35 VHU C28 N4 DOUB N N 36 VHU C6 C7 SING N N 37 VHU C4 C3 SING N N 38 VHU C7 N1 SING N N 39 VHU C3 N1 SING N N 40 VHU N1 C2 SING N N 41 VHU C2 O1 DOUB N N 42 VHU C2 C1 SING N N 43 VHU C4 H1 SING N N 44 VHU C4 H2 SING N N 45 VHU C5 H3 SING N N 46 VHU C5 H4 SING N N 47 VHU C6 H5 SING N N 48 VHU C7 H6 SING N N 49 VHU C7 H7 SING N N 50 VHU C10 H8 SING N N 51 VHU C10 H9 SING N N 52 VHU C15 H10 SING N N 53 VHU C20 H11 SING N N 54 VHU C21 H12 SING N N 55 VHU C24 H13 SING N N 56 VHU C28 H14 SING N N 57 VHU C1 H15 SING N N 58 VHU C1 H16 SING N N 59 VHU C1 H17 SING N N 60 VHU C3 H18 SING N N 61 VHU C3 H19 SING N N 62 VHU C9 H20 SING N N 63 VHU C9 H21 SING N N 64 VHU C11 H22 SING N N 65 VHU C11 H23 SING N N 66 VHU C12 H24 SING N N 67 VHU C12 H25 SING N N 68 VHU C19 H26 SING N N 69 VHU C23 H27 SING N N 70 VHU C25 H28 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VHU SMILES ACDLabs 12.01 "CC(=O)N1CCCC(C1)C(=O)N1CCN(CC1)C(=O)c1cc2cccc(c2o1)c1cccc2C(=O)N=Cc21" VHU InChI InChI 1.06 "InChI=1S/C29H28N4O5/c1-18(34)33-10-4-6-20(17-33)28(36)31-11-13-32(14-12-31)29(37)25-15-19-5-2-8-22(26(19)38-25)21-7-3-9-23-24(21)16-30-27(23)35/h2-3,5,7-9,15-16,20H,4,6,10-14,17H2,1H3/t20-/m0/s1" VHU InChIKey InChI 1.06 WEKQAAWIQMMXNF-FQEVSTJZSA-N VHU SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCC[C@@H](C1)C(=O)N2CCN(CC2)C(=O)c3oc4c(cccc4c5cccc6C(=O)N=Cc56)c3" VHU SMILES CACTVS 3.385 "CC(=O)N1CCC[CH](C1)C(=O)N2CCN(CC2)C(=O)c3oc4c(cccc4c5cccc6C(=O)N=Cc56)c3" VHU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC[C@@H](C1)C(=O)N2CCN(CC2)C(=O)c3cc4cccc(c4o3)c5cccc6c5C=NC6=O" VHU SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCCC(C1)C(=O)N2CCN(CC2)C(=O)c3cc4cccc(c4o3)c5cccc6c5C=NC6=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VHU "SYSTEMATIC NAME" ACDLabs 12.01 "(4M)-4-(2-{4-[(3S)-1-acetylpiperidine-3-carbonyl]piperazine-1-carbonyl}-1-benzofuran-7-yl)-1H-isoindol-1-one" VHU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[2-[4-[(3~{S})-1-ethanoylpiperidin-3-yl]carbonylpiperazin-1-yl]carbonyl-1-benzofuran-7-yl]isoindol-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VHU "Create component" 2023-09-12 RCSB VHU "Initial release" 2024-03-27 RCSB #