data_VI3 # _chem_comp.id VI3 _chem_comp.name "(2~{R})-2-azanyl-3-[bis(oxidanylidene)-$l^{5}-sulfanyl]propanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H6 N O4 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-03-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 152.149 _chem_comp.one_letter_code C _chem_comp.three_letter_code VI3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ONM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VI3 O2 O O 0 1 N N N N N N 4.474 -1.791 20.177 2.319 1.260 0.008 O VI3 1 VI3 O1 O1 O 0 1 N N N N N N 3.200 0.222 19.249 2.777 -1.309 -0.165 O1 VI3 2 VI3 N N N 0 1 N N N Y Y N 6.999 1.870 21.333 -0.605 1.584 -0.467 N VI3 3 VI3 CA CA C 0 1 N N R Y N N 6.107 0.899 20.646 -0.826 0.132 -0.431 CA VI3 4 VI3 C C C 0 1 N N N Y N Y 5.965 1.257 19.172 -2.254 -0.149 -0.038 C VI3 5 VI3 O O2 O 0 1 N N N Y N Y 6.106 0.356 18.336 -2.902 0.698 0.530 O2 VI3 6 VI3 CB CB C 0 1 N N N N N N 4.735 0.807 21.289 0.119 -0.502 0.591 CB VI3 7 VI3 SG SG S -1 1 N N N N N N 3.722 -0.492 20.528 1.833 -0.165 0.119 SG VI3 8 VI3 OXT O3 O 0 1 N Y N Y N Y 5.683 2.515 18.842 -2.805 -1.340 -0.318 O3 VI3 9 VI3 H2 H3 H 0 1 N Y N Y Y N 7.082 1.622 22.298 -0.779 1.999 0.436 H3 VI3 10 VI3 H H4 H 0 1 N N N Y Y N 7.903 1.852 20.905 0.326 1.800 -0.790 H4 VI3 11 VI3 HA H6 H 0 1 N N N Y N N 6.573 -0.096 20.705 -0.631 -0.289 -1.417 H6 VI3 12 VI3 H7 H7 H 0 1 N N N N N N 4.222 1.773 21.173 -0.076 -0.081 1.577 H7 VI3 13 VI3 H8 H8 H 0 1 N N N N N N 4.857 0.583 22.359 -0.045 -1.580 0.618 H8 VI3 14 VI3 HXT H9 H 0 1 N Y N Y N Y 5.614 2.587 17.897 -3.723 -1.474 -0.046 H9 VI3 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VI3 O C DOUB N N 1 VI3 C CA SING N N 2 VI3 O1 SG DOUB N N 3 VI3 O2 SG DOUB N N 4 VI3 SG CB SING N N 5 VI3 CA CB SING N N 6 VI3 CA N SING N N 7 VI3 C OXT SING N N 8 VI3 N H2 SING N N 9 VI3 N H SING N N 10 VI3 CA HA SING N N 11 VI3 CB H7 SING N N 12 VI3 CB H8 SING N N 13 VI3 OXT HXT SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VI3 InChI InChI 1.06 "InChI=1S/C3H6NO4S/c4-2(3(5)6)1-9(7)8/h2H,1,4H2,(H,5,6)/q-1/t2-/m0/s1" VI3 InChIKey InChI 1.06 RRLRIWQWKHHDRA-REOHCLBHSA-N VI3 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](C[S-](=O)=O)C(O)=O" VI3 SMILES CACTVS 3.385 "N[CH](C[S-](=O)=O)C(O)=O" VI3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)O)N)[S-](=O)=O" VI3 SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)N)[S-](=O)=O" # _pdbx_chem_comp_identifier.comp_id VI3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-sulfinato-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VI3 "Create component" 2023-03-07 PDBE VI3 "Modify linking type" 2023-03-07 PDBE VI3 "Modify leaving atom flag" 2023-03-08 PDBE VI3 "Initial release" 2023-03-15 RCSB VI3 "Modify formula" 2023-05-12 PDBE VI3 "Modify backbone" 2023-11-03 PDBE VI3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VI3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type Oxidation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #