data_VI4 # _chem_comp.id VI4 _chem_comp.name "13-(3-Amino-2,3,6-trideoxy-alpha-L-ribo-hexopyranosyl)-6,7,12,13-tetrahydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazol-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-22 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.494 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VI4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8K1X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VI4 C10 C1 C 0 1 Y N N N N N 9.115 45.830 23.517 2.655 2.465 0.172 C10 VI4 1 VI4 C11 C2 C 0 1 Y N N N N N 7.919 46.130 24.158 2.728 3.841 0.142 C11 VI4 2 VI4 C12 C3 C 0 1 Y N N N N N 7.929 46.950 25.289 1.574 4.608 0.068 C12 VI4 3 VI4 C13 C4 C 0 1 Y N N N N N 9.132 47.468 25.780 0.339 4.001 0.022 C13 VI4 4 VI4 C14 C5 C 0 1 Y N N N N N 10.351 47.163 25.130 0.249 2.610 0.052 C14 VI4 5 VI4 C16 C6 C 0 1 Y N N N N N 12.415 48.340 26.369 -2.280 1.842 -0.054 C16 VI4 6 VI4 C18 C7 C 0 1 Y N N N N N 14.567 47.858 25.295 -2.566 -0.553 -0.012 C18 VI4 7 VI4 C15 C8 C 0 1 Y N N N N N 11.754 47.523 25.363 -0.880 1.667 0.019 C15 VI4 8 VI4 C17 C9 C 0 1 Y N N N N N 13.797 48.505 26.341 -3.108 0.725 -0.068 C17 VI4 9 VI4 C19 C10 C 0 1 Y N N N N N 15.989 47.819 24.970 -3.161 -1.903 -0.010 C19 VI4 10 VI4 C24 C11 C 0 1 Y N N N N N 16.138 47.033 23.853 -2.093 -2.809 0.066 C24 VI4 11 VI4 C23 C12 C 0 1 Y N N N N N 17.439 46.821 23.313 -2.358 -4.175 0.084 C23 VI4 12 VI4 C22 C13 C 0 1 Y N N N N N 18.544 47.406 23.916 -3.660 -4.626 0.028 C22 VI4 13 VI4 C21 C14 C 0 1 Y N N N N N 18.387 48.207 25.052 -4.714 -3.729 -0.047 C21 VI4 14 VI4 C20 C15 C 0 1 Y N N N N N 17.111 48.416 25.579 -4.471 -2.372 -0.063 C20 VI4 15 VI4 C01 C16 C 0 1 N N N N N N 12.122 42.905 20.845 3.195 -2.701 1.769 C01 VI4 16 VI4 C02 C17 C 0 1 N N S N N N 13.292 43.704 21.370 3.924 -1.413 1.379 C02 VI4 17 VI4 C03 C18 C 0 1 N N R N N N 13.723 44.715 20.313 4.681 -1.633 0.067 C03 VI4 18 VI4 C04 C19 C 0 1 N N R N N N 12.656 45.723 20.048 3.678 -1.954 -1.045 C04 VI4 19 VI4 C05 C20 C 0 1 N N N N N N 12.216 46.389 21.281 2.661 -0.813 -1.145 C05 VI4 20 VI4 C06 C21 C 0 1 N N R N N N 11.885 45.418 22.402 1.981 -0.626 0.214 C06 VI4 21 VI4 C09 C22 C 0 1 Y N N N N N 10.337 46.359 24.018 1.416 1.832 0.127 C09 VI4 22 VI4 C26 C23 C 0 1 Y N N N N N 13.948 47.078 24.331 -1.176 -0.734 0.061 C26 VI4 23 VI4 C27 C24 C 0 1 Y N N N N N 12.486 46.899 24.359 -0.331 0.385 0.076 C27 VI4 24 VI4 C28 C25 C 0 1 N N N N N N 14.205 49.415 27.517 -4.523 1.242 -0.150 C28 VI4 25 VI4 C30 C26 C 0 1 N N N N N N 11.880 49.142 27.574 -3.123 3.046 -0.123 C30 VI4 26 VI4 N08 N1 N 0 1 Y N N N N N 11.616 46.199 23.567 1.048 0.501 0.142 N08 VI4 27 VI4 N25 N2 N 0 1 Y N N N N N 14.899 46.594 23.480 -0.914 -2.088 0.106 N25 VI4 28 VI4 N29 N3 N 0 1 N N N N N N 13.003 49.778 28.242 -4.422 2.705 -0.179 N29 VI4 29 VI4 N32 N4 N 0 1 N N N N N N 13.204 46.793 19.117 4.390 -2.092 -2.323 N32 VI4 30 VI4 O07 O1 O 0 1 N N N N N N 12.930 44.369 22.623 2.973 -0.361 1.208 O07 VI4 31 VI4 O31 O2 O 0 1 N N N N N N 10.744 49.226 27.900 -2.704 4.187 -0.129 O31 VI4 32 VI4 O33 O3 O 0 1 N N N N N N 14.894 45.409 20.787 5.405 -0.447 -0.270 O33 VI4 33 VI4 H1 H1 H 0 1 N N N N N N 9.117 45.197 22.642 3.559 1.878 0.226 H1 VI4 34 VI4 H2 H2 H 0 1 N N N N N N 6.987 45.732 23.784 3.692 4.326 0.177 H2 VI4 35 VI4 H3 H3 H 0 1 N N N N N N 7.001 47.186 25.788 1.646 5.685 0.045 H3 VI4 36 VI4 H4 H4 H 0 1 N N N N N N 9.130 48.101 26.655 -0.558 4.601 -0.035 H4 VI4 37 VI4 H5 H5 H 0 1 N N N N N N 17.566 46.205 22.435 -1.544 -4.882 0.141 H5 VI4 38 VI4 H6 H6 H 0 1 N N N N N N 19.530 47.242 23.506 -3.860 -5.687 0.042 H6 VI4 39 VI4 H7 H7 H 0 1 N N N N N N 19.248 48.661 25.519 -5.729 -4.095 -0.091 H7 VI4 40 VI4 H8 H8 H 0 1 N N N N N N 16.984 49.036 26.454 -5.294 -1.675 -0.120 H8 VI4 41 VI4 H9 H9 H 0 1 N N N N N N 11.807 42.174 21.604 2.490 -2.972 0.983 H9 VI4 42 VI4 H10 H10 H 0 1 N N N N N N 11.286 43.584 20.620 3.921 -3.504 1.899 H10 VI4 43 VI4 H11 H11 H 0 1 N N N N N N 12.421 42.376 19.928 2.655 -2.545 2.703 H11 VI4 44 VI4 H12 H12 H 0 1 N N N N N N 14.131 43.017 21.555 4.628 -1.142 2.165 H12 VI4 45 VI4 H13 H13 H 0 1 N N N N N N 13.955 44.178 19.381 5.377 -2.464 0.183 H13 VI4 46 VI4 H14 H14 H 0 1 N N N N N N 11.799 45.231 19.565 3.161 -2.885 -0.812 H14 VI4 47 VI4 H15 H15 H 0 1 N N N N N N 13.020 47.057 21.623 3.172 0.107 -1.427 H15 VI4 48 VI4 H16 H16 H 0 1 N N N N N N 11.317 46.982 21.056 1.911 -1.059 -1.897 H16 VI4 49 VI4 H17 H17 H 0 1 N N N N N N 10.958 44.900 22.116 1.437 -1.533 0.476 H17 VI4 50 VI4 H18 H18 H 0 1 N N N N N N 14.895 48.876 28.184 -5.002 0.881 -1.060 H18 VI4 51 VI4 H19 H19 H 0 1 N N N N N N 14.715 46.002 22.695 -0.027 -2.479 0.159 H19 VI4 52 VI4 H20 H20 H 0 1 N N N N N N 12.494 47.473 18.935 3.748 -2.304 -3.072 H20 VI4 53 VI4 H21 H21 H 0 1 N N N N N N 13.989 47.239 19.547 4.926 -1.262 -2.530 H21 VI4 54 VI4 H23 H23 H 0 1 N N N N N N 15.586 44.782 20.961 6.056 -0.182 0.394 H23 VI4 55 VI4 H24 H24 H 0 1 N N N N N N 14.698 50.321 27.134 -5.090 0.923 0.724 H24 VI4 56 VI4 H25 H25 H 0 1 N N N N N N 12.955 50.360 29.054 -5.168 3.324 -0.231 H25 VI4 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VI4 N32 C04 SING N N 1 VI4 C04 C03 SING N N 2 VI4 C04 C05 SING N N 3 VI4 C03 O33 SING N N 4 VI4 C03 C02 SING N N 5 VI4 C01 C02 SING N N 6 VI4 C05 C06 SING N N 7 VI4 C02 O07 SING N N 8 VI4 C06 O07 SING N N 9 VI4 C06 N08 SING N N 10 VI4 C23 C24 DOUB Y N 11 VI4 C23 C22 SING Y N 12 VI4 N25 C24 SING Y N 13 VI4 N25 C26 SING Y N 14 VI4 C10 C09 SING Y N 15 VI4 C10 C11 DOUB Y N 16 VI4 N08 C09 SING Y N 17 VI4 N08 C27 SING Y N 18 VI4 C24 C19 SING Y N 19 VI4 C22 C21 DOUB Y N 20 VI4 C09 C14 DOUB Y N 21 VI4 C11 C12 SING Y N 22 VI4 C26 C27 SING Y N 23 VI4 C26 C18 DOUB Y N 24 VI4 C27 C15 DOUB Y N 25 VI4 C19 C18 SING Y N 26 VI4 C19 C20 DOUB Y N 27 VI4 C21 C20 SING Y N 28 VI4 C14 C15 SING Y N 29 VI4 C14 C13 SING Y N 30 VI4 C12 C13 DOUB Y N 31 VI4 C18 C17 SING Y N 32 VI4 C15 C16 SING Y N 33 VI4 C17 C16 DOUB Y N 34 VI4 C17 C28 SING N N 35 VI4 C16 C30 SING N N 36 VI4 C28 N29 SING N N 37 VI4 C30 O31 DOUB N N 38 VI4 C30 N29 SING N N 39 VI4 C10 H1 SING N N 40 VI4 C11 H2 SING N N 41 VI4 C12 H3 SING N N 42 VI4 C13 H4 SING N N 43 VI4 C23 H5 SING N N 44 VI4 C22 H6 SING N N 45 VI4 C21 H7 SING N N 46 VI4 C20 H8 SING N N 47 VI4 C01 H9 SING N N 48 VI4 C01 H10 SING N N 49 VI4 C01 H11 SING N N 50 VI4 C02 H12 SING N N 51 VI4 C03 H13 SING N N 52 VI4 C04 H14 SING N N 53 VI4 C05 H15 SING N N 54 VI4 C05 H16 SING N N 55 VI4 C06 H17 SING N N 56 VI4 C28 H18 SING N N 57 VI4 N25 H19 SING N N 58 VI4 N32 H20 SING N N 59 VI4 N32 H21 SING N N 60 VI4 O33 H23 SING N N 61 VI4 C28 H24 SING N N 62 VI4 N29 H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VI4 InChI InChI 1.06 "InChI=1S/C26H24N4O3/c1-12-25(31)16(27)10-19(33-12)30-18-9-5-3-7-14(18)21-22-15(11-28-26(22)32)20-13-6-2-4-8-17(13)29-23(20)24(21)30/h2-9,12,16,19,25,29,31H,10-11,27H2,1H3,(H,28,32)/t12-,16+,19+,25-/m0/s1" VI4 InChIKey InChI 1.06 QNQXRLNOOGRQEB-FUJFFIKUSA-N VI4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@H](C[C@@H](N)[C@H]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7CNC(=O)c47" VI4 SMILES CACTVS 3.385 "C[CH]1O[CH](C[CH](N)[CH]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7CNC(=O)c47" VI4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H]([C@@H](C[C@@H](O1)n2c3ccccc3c4c2c5c(c6ccccc6[nH]5)c7c4C(=O)NC7)N)O" VI4 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)n2c3ccccc3c4c2c5c(c6ccccc6[nH]5)c7c4C(=O)NC7)N)O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VI4 "Create component" 2023-07-22 PDBJ VI4 "Initial release" 2024-10-16 RCSB #