data_VIR # _chem_comp.id VIR _chem_comp.name "VIRGINIAMYCIN M1" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C28 H35 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-12-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 525.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VIR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VIR C1 C1 C 0 1 N N N 66.198 7.922 41.108 0.134 0.419 -3.911 C1 VIR 1 VIR C10 C10 C 0 1 Y N N 62.531 11.569 39.014 4.443 0.289 -0.190 C10 VIR 2 VIR C12 C12 C 0 1 Y N N 62.786 11.451 41.169 4.320 0.636 -2.331 C12 VIR 3 VIR C13 C13 C 0 1 N N N 61.995 12.179 37.775 4.916 0.321 1.241 C13 VIR 4 VIR C14 C14 C 0 1 N N N 62.689 11.735 36.558 3.901 -0.375 2.116 C14 VIR 5 VIR C16 C16 C 0 1 N N N 62.381 10.390 35.970 2.763 0.402 2.725 C16 VIR 6 VIR C17 C17 C 0 1 N N S 63.531 9.831 35.167 2.290 -0.294 4.002 C17 VIR 7 VIR C19 C19 C 0 1 N N N 63.968 8.456 35.616 0.800 -0.159 4.157 C19 VIR 8 VIR C2 C2 C 0 1 N N N 67.377 7.978 40.453 -0.177 1.132 -4.977 C2 VIR 9 VIR C20 C20 C 0 1 N N N 65.184 8.003 35.568 0.292 0.524 5.177 C20 VIR 10 VIR C21 C21 C 0 1 N N N 66.341 8.820 35.046 1.206 1.159 6.193 C21 VIR 11 VIR C22 C22 C 0 1 N N N 65.472 6.687 36.059 -1.169 0.660 5.311 C22 VIR 12 VIR C23 C23 C 0 1 N N N 66.780 6.303 36.199 -1.960 0.050 4.439 C23 VIR 13 VIR C24 C24 C 0 1 N N N 67.221 4.932 36.761 -3.463 0.168 4.543 C24 VIR 14 VIR C26 C26 C 0 1 N N N 67.030 4.132 39.034 -3.905 0.602 2.219 C26 VIR 15 VIR C28 C28 C 0 1 N N N 67.659 4.726 40.334 -4.062 0.152 0.832 C28 VIR 16 VIR C29 C29 C 0 1 N N N 67.604 4.083 41.257 -4.015 1.036 -0.163 C29 VIR 17 VIR C3 C3 C 0 1 N N N 67.366 9.071 39.442 1.088 1.502 -5.717 C3 VIR 18 VIR C30 C30 C 0 1 N N R 68.073 4.194 42.741 -4.143 0.569 -1.594 C30 VIR 19 VIR C31 C31 C 0 1 N N N 69.591 4.381 42.909 -4.085 1.777 -2.532 C31 VIR 20 VIR C32 C32 C 0 1 N N R 67.287 5.343 43.407 -2.995 -0.388 -1.920 C32 VIR 21 VIR C33 C33 C 0 1 N N N 68.010 5.898 44.602 -3.567 -1.703 -2.453 C33 VIR 22 VIR C34 C34 C 0 1 N N N 67.193 7.034 45.234 -2.421 -2.665 -2.773 C34 VIR 23 VIR C35 C35 C 0 1 N N N 68.212 4.789 45.650 -4.478 -2.329 -1.395 C35 VIR 24 VIR C37 C37 C 0 1 N N N 65.932 6.861 42.115 -0.820 -0.115 -2.929 C37 VIR 25 VIR C4 C4 C 0 1 N N N 65.987 9.681 39.532 2.215 0.891 -4.861 C4 VIR 26 VIR C6 C6 C 0 1 N N N 64.233 9.415 41.315 2.025 -0.405 -2.705 C6 VIR 27 VIR C8 C8 C 0 1 Y N N 63.463 10.432 40.571 3.199 -0.011 -1.927 C8 VIR 28 VIR N25 N25 N 0 1 N N N 67.522 5.013 38.165 -4.024 -0.284 3.248 N25 VIR 29 VIR N5 N5 N 0 1 N N N 65.285 8.923 40.630 1.515 0.237 -3.755 N5 VIR 30 VIR N9 N9 N 0 1 Y N N 63.287 10.520 39.196 3.325 -0.232 -0.583 N9 VIR 31 VIR O11 O11 O 0 1 Y N N 62.182 12.180 40.194 5.091 0.810 -1.241 O11 VIR 32 VIR O15 O15 O 0 1 N N N 63.502 12.502 36.043 4.003 -1.560 2.328 O15 VIR 33 VIR O18 O18 O 0 1 N N N 63.094 9.724 33.775 2.634 -1.679 3.938 O18 VIR 34 VIR O27 O27 O 0 1 N N N 66.265 3.189 38.729 -3.667 1.772 2.453 O27 VIR 35 VIR O36 O36 O 0 1 N N N 67.173 6.462 42.478 -2.124 0.202 -2.926 O36 VIR 36 VIR O38 O38 O 0 1 N N N 64.896 6.393 42.539 -0.409 -0.880 -2.080 O38 VIR 37 VIR O7 O7 O 0 1 N N N 63.909 9.097 42.459 1.457 -1.423 -2.358 O7 VIR 38 VIR H12 H12 H 0 1 N N N 62.735 11.650 42.252 4.550 0.954 -3.337 H12 VIR 39 VIR H131 1H13 H 0 0 N N N 60.897 12.003 37.690 5.876 -0.189 1.320 H131 VIR 40 VIR H132 2H13 H 0 0 N N N 61.998 13.291 37.848 5.026 1.356 1.566 H132 VIR 41 VIR H161 1H16 H 0 0 N N N 62.057 9.672 36.759 3.100 1.410 2.965 H161 VIR 42 VIR H162 2H16 H 0 0 N N N 61.446 10.422 35.362 1.938 0.455 2.014 H162 VIR 43 VIR H17 H17 H 0 1 N N N 64.397 10.519 35.304 2.784 0.159 4.862 H17 VIR 44 VIR H19 H19 H 0 1 N N N 63.309 7.676 36.036 0.141 -0.621 3.437 H19 VIR 45 VIR HC2 HC2 H 0 1 N N N 68.188 7.271 40.695 -1.179 1.408 -5.273 HC2 VIR 46 VIR H211 1H21 H 0 0 N N N 67.385 8.431 35.004 0.611 1.673 6.947 H211 VIR 47 VIR H212 2H21 H 0 0 N N N 66.071 9.165 34.020 1.811 0.388 6.670 H212 VIR 48 VIR H213 3H21 H 0 0 N N N 66.362 9.775 35.620 1.859 1.876 5.695 H213 VIR 49 VIR H22 H22 H 0 1 N N N 64.682 5.965 36.330 -1.583 1.257 6.107 H22 VIR 50 VIR H23 H23 H 0 1 N N N 67.473 7.092 35.861 -1.530 -0.550 3.648 H23 VIR 51 VIR H241 1H24 H 0 0 N N N 66.463 4.141 36.550 -3.830 -0.465 5.350 H241 VIR 52 VIR H242 2H24 H 0 0 N N N 68.076 4.509 36.183 -3.743 1.205 4.728 H242 VIR 53 VIR H28 H28 H 0 1 N N N 68.174 5.658 40.618 -4.200 -0.896 0.615 H28 VIR 54 VIR H29 H29 H 0 1 N N N 67.066 3.310 40.681 -3.908 2.089 0.055 H29 VIR 55 VIR HC31 1HC3 H 0 0 N N N 68.193 9.808 39.567 1.088 1.065 -6.716 HC31 VIR 56 VIR HC32 2HC3 H 0 0 N N N 67.644 8.737 38.415 1.195 2.585 -5.774 HC32 VIR 57 VIR H30 H30 H 0 1 N N N 67.857 3.222 43.242 -5.094 0.053 -1.725 H30 VIR 58 VIR H311 1H31 H 0 0 N N N 69.926 4.460 43.969 -4.903 2.458 -2.298 H311 VIR 59 VIR H312 2H31 H 0 0 N N N 70.145 3.568 42.384 -3.134 2.293 -2.402 H312 VIR 60 VIR H313 3H31 H 0 0 N N N 69.943 5.260 42.321 -4.177 1.440 -3.565 H313 VIR 61 VIR H32 H32 H 0 1 N N N 66.299 4.918 43.702 -2.420 -0.584 -1.015 H32 VIR 62 VIR H33 H33 H 0 1 N N N 68.999 6.290 44.268 -4.142 -1.508 -3.358 H33 VIR 63 VIR H341 1H34 H 0 0 N N N 67.729 7.445 46.120 -2.829 -3.602 -3.153 H341 VIR 64 VIR H342 2H34 H 0 0 N N N 66.941 7.828 44.493 -1.773 -2.219 -3.527 H342 VIR 65 VIR H343 3H34 H 0 0 N N N 66.156 6.711 45.487 -1.846 -2.859 -1.868 H343 VIR 66 VIR H351 1H35 H 0 0 N N N 68.748 5.200 46.536 -3.903 -2.523 -0.490 H351 VIR 67 VIR H352 2H35 H 0 0 N N N 67.251 4.298 45.931 -5.294 -1.643 -1.167 H352 VIR 68 VIR H353 3H35 H 0 0 N N N 68.729 3.898 45.223 -4.886 -3.265 -1.775 H353 VIR 69 VIR HC41 1HC4 H 0 0 N N N 65.993 10.785 39.682 2.780 0.160 -5.440 HC41 VIR 70 VIR HC42 2HC4 H 0 0 N N N 65.433 9.684 38.564 2.875 1.672 -4.486 HC42 VIR 71 VIR H25 H25 H 0 1 N N N 68.118 5.736 38.567 -4.446 -1.150 3.139 H25 VIR 72 VIR "H18'" "'H18" H 0 0 N N N 63.817 9.372 33.269 2.320 -2.083 4.758 "H18'" VIR 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VIR C1 C2 DOUB N N 1 VIR C1 C37 SING N N 2 VIR C1 N5 SING N N 3 VIR C10 C13 SING N N 4 VIR C10 N9 DOUB Y N 5 VIR C10 O11 SING Y N 6 VIR C12 C8 DOUB Y N 7 VIR C12 O11 SING Y N 8 VIR C12 H12 SING N N 9 VIR C13 C14 SING N N 10 VIR C13 H131 SING N N 11 VIR C13 H132 SING N N 12 VIR C14 C16 SING N N 13 VIR C14 O15 DOUB N N 14 VIR C16 C17 SING N N 15 VIR C16 H161 SING N N 16 VIR C16 H162 SING N N 17 VIR C17 C19 SING N N 18 VIR C17 O18 SING N N 19 VIR C17 H17 SING N N 20 VIR C19 C20 DOUB N E 21 VIR C19 H19 SING N N 22 VIR C2 C3 SING N N 23 VIR C2 HC2 SING N N 24 VIR C20 C21 SING N N 25 VIR C20 C22 SING N N 26 VIR C21 H211 SING N N 27 VIR C21 H212 SING N N 28 VIR C21 H213 SING N N 29 VIR C22 C23 DOUB N E 30 VIR C22 H22 SING N N 31 VIR C23 C24 SING N N 32 VIR C23 H23 SING N N 33 VIR C24 N25 SING N N 34 VIR C24 H241 SING N N 35 VIR C24 H242 SING N N 36 VIR C26 C28 SING N N 37 VIR C26 N25 SING N N 38 VIR C26 O27 DOUB N N 39 VIR C28 C29 DOUB N E 40 VIR C28 H28 SING N N 41 VIR C29 C30 SING N N 42 VIR C29 H29 SING N N 43 VIR C3 C4 SING N N 44 VIR C3 HC31 SING N N 45 VIR C3 HC32 SING N N 46 VIR C30 C31 SING N N 47 VIR C30 C32 SING N N 48 VIR C30 H30 SING N N 49 VIR C31 H311 SING N N 50 VIR C31 H312 SING N N 51 VIR C31 H313 SING N N 52 VIR C32 C33 SING N N 53 VIR C32 O36 SING N N 54 VIR C32 H32 SING N N 55 VIR C33 C34 SING N N 56 VIR C33 C35 SING N N 57 VIR C33 H33 SING N N 58 VIR C34 H341 SING N N 59 VIR C34 H342 SING N N 60 VIR C34 H343 SING N N 61 VIR C35 H351 SING N N 62 VIR C35 H352 SING N N 63 VIR C35 H353 SING N N 64 VIR C37 O36 SING N N 65 VIR C37 O38 DOUB N N 66 VIR C4 N5 SING N N 67 VIR C4 HC41 SING N N 68 VIR C4 HC42 SING N N 69 VIR C6 C8 SING N N 70 VIR C6 N5 SING N N 71 VIR C6 O7 DOUB N N 72 VIR C8 N9 SING Y N 73 VIR N25 H25 SING N N 74 VIR O18 "H18'" SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VIR SMILES ACDLabs 10.04 "O=C2N1C(=CCC1)C(=O)OC(C(C=CC(=O)NCC=CC(=CC(O)CC(=O)Cc3nc2co3)C)C)C(C)C" VIR SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@H]1OC(=O)C2=CCCN2C(=O)c3coc(CC(=O)C[C@H](O)\C=C(C)\C=C\CNC(=O)\C=C\[C@H]1C)n3" VIR SMILES CACTVS 3.341 "CC(C)[CH]1OC(=O)C2=CCCN2C(=O)c3coc(CC(=O)C[CH](O)C=C(C)C=CCNC(=O)C=C[CH]1C)n3" VIR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1\C=C\C(=O)NC\C=C\C(=C\[C@H](CC(=O)Cc2nc(co2)C(=O)N3CCC=C3C(=O)O[C@@H]1C(C)C)O)\C" VIR SMILES "OpenEye OEToolkits" 1.5.0 "CC1C=CC(=O)NCC=CC(=CC(CC(=O)Cc2nc(co2)C(=O)N3CCC=C3C(=O)OC1C(C)C)O)C" VIR InChI InChI 1.03 "InChI=1S/C28H35N3O7/c1-17(2)26-19(4)9-10-24(34)29-11-5-7-18(3)13-20(32)14-21(33)15-25-30-22(16-37-25)27(35)31-12-6-8-23(31)28(36)38-26/h5,7-10,13,16-17,19-20,26,32H,6,11-12,14-15H2,1-4H3,(H,29,34)/b7-5+,10-9+,18-13+/t19-,20-,26-/m1/s1" VIR InChIKey InChI 1.03 DAIKHDNSXMZDCU-FQTGFAPKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VIR "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4R,5E,10E,12E,14S)-14-hydroxy-4,12-dimethyl-3-(1-methylethyl)-8,9,14,15,24,25-hexahydro-1H,3H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,16,22(4H,17H)-tetrone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VIR "Create component" 2001-12-04 RCSB VIR "Modify descriptor" 2011-06-04 RCSB #