data_VJ3 # _chem_comp.id VJ3 _chem_comp.name "1-[([1,1'-biphenyl]-2-yl)carbamoyl]-D-proline" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-09 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.347 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FYC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJ3 C1 C1 C 0 1 N N N 7.909 6.701 15.598 -4.006 1.973 -0.089 C1 VJ3 1 VJ3 C2 C2 C 0 1 N N R 6.961 6.361 16.777 -3.384 0.617 -0.483 C2 VJ3 2 VJ3 N3 N1 N 0 1 N N N 6.350 7.628 17.102 -1.970 0.651 -0.081 N3 VJ3 3 VJ3 C4 C3 C 0 1 N N N 6.641 8.616 16.013 -1.694 1.948 0.564 C4 VJ3 4 VJ3 C5 C4 C 0 1 N N N 7.209 7.800 14.853 -2.771 2.908 0.002 C5 VJ3 5 VJ3 C6 C5 C 0 1 N N N 5.914 5.321 16.416 -4.094 -0.502 0.235 C6 VJ3 6 VJ3 O7 O1 O 0 1 N N N 6.271 4.476 15.486 -5.272 -0.952 -0.223 O7 VJ3 7 VJ3 O8 O2 O 0 1 N N N 4.844 5.233 17.019 -3.603 -0.992 1.224 O8 VJ3 8 VJ3 C9 C6 C 0 1 N N N 5.961 7.981 18.376 -1.075 -0.338 -0.270 C9 VJ3 9 VJ3 O10 O3 O 0 1 N N N 5.834 9.180 18.712 -1.416 -1.370 -0.816 O10 VJ3 10 VJ3 N11 N2 N 0 1 N N N 5.653 6.943 19.221 0.198 -0.185 0.146 N11 VJ3 11 VJ3 C12 C7 C 0 1 Y N N 5.484 7.089 20.594 1.096 -1.252 0.057 C12 VJ3 12 VJ3 C13 C8 C 0 1 Y N N 6.545 7.633 21.352 0.627 -2.557 0.048 C13 VJ3 13 VJ3 C14 C9 C 0 1 Y N N 6.399 7.674 22.733 1.516 -3.611 -0.040 C14 VJ3 14 VJ3 C15 C10 C 0 1 Y N N 5.306 7.141 23.393 2.877 -3.372 -0.118 C15 VJ3 15 VJ3 C16 C11 C 0 1 Y N N 4.235 6.593 22.625 3.358 -2.078 -0.109 C16 VJ3 16 VJ3 C17 C12 C 0 1 Y N N 4.320 6.548 21.229 2.471 -1.008 -0.028 C17 VJ3 17 VJ3 C18 C13 C 0 1 Y N N 3.193 5.964 20.452 2.982 0.385 -0.025 C18 VJ3 18 VJ3 C19 C14 C 0 1 Y N N 2.758 4.666 20.689 4.010 0.750 0.842 C19 VJ3 19 VJ3 C20 C15 C 0 1 Y N N 1.681 4.150 20.001 4.482 2.047 0.841 C20 VJ3 20 VJ3 C21 C16 C 0 1 Y N N 1.029 4.922 19.065 3.936 2.984 -0.019 C21 VJ3 21 VJ3 C22 C17 C 0 1 Y N N 1.447 6.212 18.808 2.915 2.626 -0.881 C22 VJ3 22 VJ3 C23 C18 C 0 1 Y N N 2.568 6.715 19.484 2.440 1.331 -0.892 C23 VJ3 23 VJ3 H24 H1 H 0 1 N N N 8.885 7.045 15.971 -4.696 2.319 -0.858 H24 VJ3 24 VJ3 H25 H2 H 0 1 N N N 8.053 5.824 14.950 -4.507 1.901 0.877 H25 VJ3 25 VJ3 H26 H3 H 0 1 N N N 7.561 5.996 17.624 -3.459 0.474 -1.561 H26 VJ3 26 VJ3 H28 H4 H 0 1 N N N 5.718 9.129 15.705 -1.791 1.861 1.646 H28 VJ3 27 VJ3 H27 H5 H 0 1 N N N 7.377 9.358 16.356 -0.697 2.299 0.299 H27 VJ3 28 VJ3 H29 H6 H 0 1 N N N 7.913 8.391 14.249 -2.489 3.278 -0.984 H29 VJ3 29 VJ3 H30 H7 H 0 1 N N N 6.411 7.406 14.206 -2.956 3.734 0.689 H30 VJ3 30 VJ3 H31 H8 H 0 1 N N N 5.590 3.823 15.372 -5.690 -1.671 0.271 H31 VJ3 31 VJ3 H32 H9 H 0 1 N N N 5.544 6.030 18.827 0.490 0.667 0.507 H32 VJ3 32 VJ3 H33 H10 H 0 1 N N N 7.439 8.004 20.874 -0.434 -2.750 0.109 H33 VJ3 33 VJ3 H34 H11 H 0 1 N N N 7.175 8.144 23.319 1.148 -4.626 -0.047 H34 VJ3 34 VJ3 H35 H12 H 0 1 N N N 5.264 7.140 24.472 3.566 -4.201 -0.185 H35 VJ3 35 VJ3 H36 H13 H 0 1 N N N 3.356 6.212 23.123 4.421 -1.896 -0.170 H36 VJ3 36 VJ3 H37 H14 H 0 1 N N N 3.269 4.056 21.419 4.437 0.020 1.515 H37 VJ3 37 VJ3 H38 H15 H 0 1 N N N 1.349 3.141 20.196 5.279 2.332 1.512 H38 VJ3 38 VJ3 H39 H16 H 0 1 N N N 0.185 4.515 18.528 4.308 3.997 -0.016 H39 VJ3 39 VJ3 H40 H17 H 0 1 N N N 0.917 6.826 18.095 2.493 3.362 -1.550 H40 VJ3 40 VJ3 H41 H18 H 0 1 N N N 2.943 7.699 19.243 1.646 1.052 -1.569 H41 VJ3 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJ3 C1 C2 SING N N 1 VJ3 C2 N3 SING N N 2 VJ3 N3 C4 SING N N 3 VJ3 C1 C5 SING N N 4 VJ3 C4 C5 SING N N 5 VJ3 C2 C6 SING N N 6 VJ3 C6 O7 SING N N 7 VJ3 C6 O8 DOUB N N 8 VJ3 N3 C9 SING N N 9 VJ3 C9 O10 DOUB N N 10 VJ3 C9 N11 SING N N 11 VJ3 N11 C12 SING N N 12 VJ3 C12 C13 DOUB Y N 13 VJ3 C13 C14 SING Y N 14 VJ3 C14 C15 DOUB Y N 15 VJ3 C15 C16 SING Y N 16 VJ3 C12 C17 SING Y N 17 VJ3 C16 C17 DOUB Y N 18 VJ3 C17 C18 SING N N 19 VJ3 C18 C19 DOUB Y N 20 VJ3 C19 C20 SING Y N 21 VJ3 C20 C21 DOUB Y N 22 VJ3 C21 C22 SING Y N 23 VJ3 C18 C23 SING Y N 24 VJ3 C22 C23 DOUB Y N 25 VJ3 C1 H24 SING N N 26 VJ3 C1 H25 SING N N 27 VJ3 C2 H26 SING N N 28 VJ3 C4 H28 SING N N 29 VJ3 C4 H27 SING N N 30 VJ3 C5 H29 SING N N 31 VJ3 C5 H30 SING N N 32 VJ3 O7 H31 SING N N 33 VJ3 N11 H32 SING N N 34 VJ3 C13 H33 SING N N 35 VJ3 C14 H34 SING N N 36 VJ3 C15 H35 SING N N 37 VJ3 C16 H36 SING N N 38 VJ3 C19 H37 SING N N 39 VJ3 C20 H38 SING N N 40 VJ3 C21 H39 SING N N 41 VJ3 C22 H40 SING N N 42 VJ3 C23 H41 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJ3 SMILES ACDLabs 12.01 "OC(=O)C1CCCN1C(=O)Nc1ccccc1c1ccccc1" VJ3 InChI InChI 1.06 "InChI=1S/C18H18N2O3/c21-17(22)16-11-6-12-20(16)18(23)19-15-10-5-4-9-14(15)13-7-2-1-3-8-13/h1-5,7-10,16H,6,11-12H2,(H,19,23)(H,21,22)/t16-/m0/s1" VJ3 InChIKey InChI 1.06 FNKODVVRWXUHMU-INIZCTEOSA-N VJ3 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H]1CCCN1C(=O)Nc2ccccc2c3ccccc3" VJ3 SMILES CACTVS 3.385 "OC(=O)[CH]1CCCN1C(=O)Nc2ccccc2c3ccccc3" VJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2NC(=O)N3CCC[C@@H]3C(=O)O" VJ3 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2NC(=O)N3CCCC3C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VJ3 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[([1,1'-biphenyl]-2-yl)carbamoyl]-D-proline" VJ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-1-[(2-phenylphenyl)carbamoyl]pyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJ3 "Create component" 2023-05-09 RCSB VJ3 "Initial release" 2023-06-14 RCSB #