data_VJA # _chem_comp.id VJA _chem_comp.name "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-14 _chem_comp.pdbx_modified_date 2021-10-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.619 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JP0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJA C1 C1 C 0 1 Y N N -16.621 10.502 -2.588 10.133 1.679 1.020 C1 VJA 1 VJA C10 C2 C 0 1 N N N -12.931 -1.542 2.344 -4.839 -2.299 1.566 C10 VJA 2 VJA C11 C3 C 0 1 N N S -15.064 4.803 -0.471 2.115 -1.053 -0.428 C11 VJA 3 VJA C12 C4 C 0 1 N N N -15.224 3.525 0.297 0.933 -0.343 0.180 C12 VJA 4 VJA C14 C5 C 0 1 N N S -15.625 1.141 0.279 -1.429 0.255 0.181 C14 VJA 5 VJA C15 C6 C 0 1 N N N -14.242 0.603 0.537 -2.700 -0.533 -0.005 C15 VJA 6 VJA C17 C7 C 0 1 N N R -13.016 -0.053 2.701 -4.982 -1.087 0.643 C17 VJA 7 VJA C19 C8 C 0 1 N N N -11.640 0.537 2.994 -6.209 -0.272 1.059 C19 VJA 8 VJA C2 C9 C 0 1 Y N N -17.421 9.510 -3.158 9.854 0.342 1.235 C2 VJA 9 VJA C20 C10 C 0 1 N N S -11.626 2.037 2.760 -6.424 0.869 0.062 C20 VJA 10 VJA C21 C11 C 0 1 N N N -10.437 2.385 1.883 -7.642 1.727 0.477 C21 VJA 11 VJA C22 C12 C 0 1 N N N -9.812 3.615 2.531 -8.780 1.076 -0.339 C22 VJA 12 VJA C24 C13 C 0 1 N N N -11.394 2.818 4.014 -6.803 0.321 -1.296 C24 VJA 13 VJA C3 C14 C 0 1 Y N N -18.126 8.648 -2.321 8.783 -0.252 0.595 C3 VJA 14 VJA C30 C15 C 0 1 N N N -13.669 5.369 -0.305 2.055 -2.540 -0.073 C30 VJA 15 VJA C31 C16 C 0 1 N N N -13.614 6.733 -0.993 0.757 -3.141 -0.616 C31 VJA 16 VJA C32 C17 C 0 1 N N N -12.609 4.400 -0.816 3.251 -3.262 -0.696 C32 VJA 17 VJA C34 C18 C 0 1 N N N -16.434 0.166 -0.572 -1.538 1.583 -0.572 C34 VJA 18 VJA C35 C19 C 0 1 N N N -17.895 0.601 -0.693 -2.639 2.438 0.058 C35 VJA 19 VJA C36 C20 C 0 1 N N N -18.588 0.668 0.666 -2.222 2.845 1.473 C36 VJA 20 VJA C37 C21 C 0 1 N N N -18.662 -0.286 -1.684 -2.859 3.692 -0.790 C37 VJA 21 VJA C4 C22 C 0 1 Y N N -18.045 8.768 -0.937 7.989 0.491 -0.259 C4 VJA 22 VJA C5 C23 C 0 1 Y N N -17.238 9.751 -0.385 8.267 1.828 -0.473 C5 VJA 23 VJA C6 C24 C 0 1 Y N N -16.525 10.615 -1.205 9.340 2.421 0.166 C6 VJA 24 VJA C7 C25 C 0 1 N N N -18.819 7.842 -0.025 6.822 -0.158 -0.957 C7 VJA 25 VJA C9 C26 C 0 1 N N N -17.148 6.020 -0.355 4.494 -0.560 -0.617 C9 VJA 26 VJA N10 N1 N 0 1 N N N -15.928 5.798 0.096 3.355 -0.475 0.098 N10 VJA 27 VJA N13 N2 N 0 1 N N N -15.585 2.438 -0.381 -0.297 -0.512 -0.344 N13 VJA 28 VJA N16 N3 N 0 1 N N N -13.798 0.794 1.789 -3.783 -0.252 0.746 N16 VJA 29 VJA N23 N4 N 0 1 N N N -10.415 3.697 3.846 -8.125 0.454 -1.497 N23 VJA 30 VJA O11 O1 O 0 1 N N N -11.781 -1.789 1.514 -4.799 -1.861 2.925 O11 VJA 31 VJA O26 O2 O 0 1 N N N -12.029 2.662 5.048 -6.026 -0.168 -2.089 O26 VJA 32 VJA O29 O3 O 0 1 N N N -17.556 5.593 -1.424 4.493 -1.115 -1.697 O29 VJA 33 VJA O33 O4 O 0 1 N N N -15.042 3.499 1.505 1.088 0.382 1.140 O33 VJA 34 VJA O38 O5 O 0 1 N N N -13.605 0.100 -0.375 -2.748 -1.420 -0.831 O38 VJA 35 VJA O8 O6 O 0 1 N N N -18.014 6.802 0.508 5.633 -0.029 -0.133 O8 VJA 36 VJA H1 H1 H 0 1 N N N -16.075 11.184 -3.223 10.967 2.144 1.523 H1 VJA 37 VJA H2 H2 H 0 1 N N N -13.841 -1.838 1.802 -5.690 -2.966 1.424 H2 VJA 38 VJA H3 H3 H 0 1 N N N -12.846 -2.133 3.268 -3.918 -2.831 1.327 H3 VJA 39 VJA H4 H4 H 0 1 N N N -15.284 4.641 -1.536 2.091 -0.936 -1.511 H4 VJA 40 VJA H5 H5 H 0 1 N N N -16.136 1.251 1.247 -1.275 0.451 1.242 H5 VJA 41 VJA H6 H6 H 0 1 N N N -13.549 -0.022 3.663 -5.103 -1.426 -0.386 H6 VJA 42 VJA H7 H7 H 0 1 N N N -11.379 0.335 4.043 -7.088 -0.917 1.068 H7 VJA 43 VJA H8 H8 H 0 1 N N N -10.898 0.064 2.334 -6.050 0.141 2.055 H8 VJA 44 VJA H9 H9 H 0 1 N N N -17.492 9.412 -4.231 10.474 -0.238 1.902 H9 VJA 45 VJA H10 H10 H 0 1 N N N -12.561 2.354 2.276 -5.528 1.485 -0.011 H10 VJA 46 VJA H11 H11 H 0 1 N N N -10.766 2.614 0.859 -7.832 1.643 1.547 H11 VJA 47 VJA H12 H12 H 0 1 N N N -9.718 1.553 1.860 -7.501 2.769 0.188 H12 VJA 48 VJA H13 H13 H 0 1 N N N -8.722 3.496 2.613 -9.287 0.318 0.259 H13 VJA 49 VJA H14 H14 H 0 1 N N N -10.039 4.518 1.945 -9.489 1.834 -0.669 H14 VJA 50 VJA H15 H15 H 0 1 N N N -18.745 7.875 -2.753 8.566 -1.297 0.762 H15 VJA 51 VJA H16 H16 H 0 1 N N N -13.492 5.527 0.769 2.083 -2.656 1.011 H16 VJA 52 VJA H17 H17 H 0 1 N N N -14.400 7.383 -0.582 0.712 -2.994 -1.695 H17 VJA 53 VJA H18 H18 H 0 1 N N N -12.630 7.192 -0.818 0.729 -4.208 -0.393 H18 VJA 54 VJA H19 H19 H 0 1 N N N -13.772 6.605 -2.074 -0.096 -2.650 -0.147 H19 VJA 55 VJA H20 H20 H 0 1 N N N -12.701 3.441 -0.284 4.176 -2.833 -0.309 H20 VJA 56 VJA H21 H21 H 0 1 N N N -12.752 4.236 -1.894 3.208 -4.321 -0.443 H21 VJA 57 VJA H22 H22 H 0 1 N N N -11.609 4.823 -0.639 3.222 -3.145 -1.779 H22 VJA 58 VJA H23 H23 H 0 1 N N N -16.396 -0.830 -0.107 -0.587 2.113 -0.512 H23 VJA 59 VJA H24 H24 H 0 1 N N N -15.991 0.118 -1.578 -1.781 1.390 -1.617 H24 VJA 60 VJA H25 H25 H 0 1 N N N -17.895 1.620 -1.107 -3.564 1.863 0.103 H25 VJA 61 VJA H26 H26 H 0 1 N N N -18.007 1.311 1.343 -1.338 3.481 1.422 H26 VJA 62 VJA H27 H27 H 0 1 N N N -19.599 1.084 0.542 -3.036 3.392 1.948 H27 VJA 63 VJA H28 H28 H 0 1 N N N -18.658 -0.344 1.092 -1.995 1.953 2.056 H28 VJA 64 VJA H29 H29 H 0 1 N N N -19.707 0.053 -1.748 -3.156 3.402 -1.798 H29 VJA 65 VJA H30 H30 H 0 1 N N N -18.193 -0.217 -2.677 -3.644 4.301 -0.341 H30 VJA 66 VJA H31 H31 H 0 1 N N N -18.636 -1.330 -1.338 -1.934 4.267 -0.835 H31 VJA 67 VJA H32 H32 H 0 1 N N N -17.164 9.845 0.688 7.647 2.408 -1.141 H32 VJA 68 VJA H33 H33 H 0 1 N N N -15.895 11.376 -0.769 9.555 3.467 0.001 H33 VJA 69 VJA H34 H34 H 0 1 N N N -19.231 8.431 0.808 6.654 0.333 -1.916 H34 VJA 70 VJA H35 H35 H 0 1 N N N -19.643 7.391 -0.598 7.037 -1.213 -1.122 H35 VJA 71 VJA H36 H36 H 0 1 N N N -15.593 6.345 0.863 3.355 -0.032 0.961 H36 VJA 72 VJA H37 H37 H 0 1 N N N -15.830 2.513 -1.348 -0.433 -1.143 -1.069 H37 VJA 73 VJA H38 H38 H 0 1 N N N -14.047 1.682 2.175 -3.769 0.504 1.354 H38 VJA 74 VJA H39 H39 H 0 1 N N N -10.125 4.345 4.550 -8.587 0.176 -2.303 H39 VJA 75 VJA H40 H40 H 0 1 N N N -11.738 -2.713 1.299 -4.709 -2.579 3.567 H40 VJA 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJA C2 C1 DOUB Y N 1 VJA C2 C3 SING Y N 2 VJA C1 C6 SING Y N 3 VJA C3 C4 DOUB Y N 4 VJA C37 C35 SING N N 5 VJA O29 C9 DOUB N N 6 VJA C6 C5 DOUB Y N 7 VJA C31 C30 SING N N 8 VJA C4 C5 SING Y N 9 VJA C4 C7 SING N N 10 VJA C32 C30 SING N N 11 VJA C35 C34 SING N N 12 VJA C35 C36 SING N N 13 VJA C34 C14 SING N N 14 VJA C11 C30 SING N N 15 VJA C11 N10 SING N N 16 VJA C11 C12 SING N N 17 VJA N13 C14 SING N N 18 VJA N13 C12 SING N N 19 VJA O38 C15 DOUB N N 20 VJA C9 N10 SING N N 21 VJA C9 O8 SING N N 22 VJA C7 O8 SING N N 23 VJA C14 C15 SING N N 24 VJA C12 O33 DOUB N N 25 VJA C15 N16 SING N N 26 VJA O11 C10 SING N N 27 VJA N16 C17 SING N N 28 VJA C21 C22 SING N N 29 VJA C21 C20 SING N N 30 VJA C10 C17 SING N N 31 VJA C22 N23 SING N N 32 VJA C17 C19 SING N N 33 VJA C20 C19 SING N N 34 VJA C20 C24 SING N N 35 VJA N23 C24 SING N N 36 VJA C24 O26 DOUB N N 37 VJA C1 H1 SING N N 38 VJA C10 H2 SING N N 39 VJA C10 H3 SING N N 40 VJA C11 H4 SING N N 41 VJA C14 H5 SING N N 42 VJA C17 H6 SING N N 43 VJA C19 H7 SING N N 44 VJA C19 H8 SING N N 45 VJA C2 H9 SING N N 46 VJA C20 H10 SING N N 47 VJA C21 H11 SING N N 48 VJA C21 H12 SING N N 49 VJA C22 H13 SING N N 50 VJA C22 H14 SING N N 51 VJA C3 H15 SING N N 52 VJA C30 H16 SING N N 53 VJA C31 H17 SING N N 54 VJA C31 H18 SING N N 55 VJA C31 H19 SING N N 56 VJA C32 H20 SING N N 57 VJA C32 H21 SING N N 58 VJA C32 H22 SING N N 59 VJA C34 H23 SING N N 60 VJA C34 H24 SING N N 61 VJA C35 H25 SING N N 62 VJA C36 H26 SING N N 63 VJA C36 H27 SING N N 64 VJA C36 H28 SING N N 65 VJA C37 H29 SING N N 66 VJA C37 H30 SING N N 67 VJA C37 H31 SING N N 68 VJA C5 H32 SING N N 69 VJA C6 H33 SING N N 70 VJA C7 H34 SING N N 71 VJA C7 H35 SING N N 72 VJA N10 H36 SING N N 73 VJA N13 H37 SING N N 74 VJA N16 H38 SING N N 75 VJA N23 H39 SING N N 76 VJA O11 H40 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJA SMILES ACDLabs 12.01 "c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CO)CC2C(=O)NCC2)=O)CC(C)C)=O" VJA InChI InChI 1.03 "InChI=1S/C26H40N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,16-17,19-22,31H,10-15H2,1-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20+,21-,22-/m0/s1" VJA InChIKey InChI 1.03 GLZAWCKOCLSXEU-LRSLUSHPSA-N VJA SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[C@@H](CO)C[C@@H]2CCNC2=O" VJA SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O" VJA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@H](C[C@@H]1CCNC1=O)CO)NC(=O)[C@H](C(C)C)NC(=O)OCc2ccccc2" VJA SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)C)NC(=O)OCc2ccccc2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VJA "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" VJA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJA "Create component" 2020-08-14 RCSB VJA "Initial release" 2021-10-13 RCSB ##