data_VJL # _chem_comp.id VJL _chem_comp.name "Co-linked Tetra-amido macrocyclic ligand" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H37 Co N7 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-09 _chem_comp.pdbx_modified_date 2023-10-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 670.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CRN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJL C13 C1 C 0 1 Y N N 10.454 -3.989 -5.992 0.409 0.765 0.530 C13 VJL 1 VJL C15 C2 C 0 1 Y N N 8.660 -3.701 -7.620 -1.974 0.693 0.571 C15 VJL 2 VJL C20 C3 C 0 1 N N N 3.650 -2.422 -7.811 -5.629 -3.276 1.553 C20 VJL 3 VJL C21 C4 C 0 1 N N N 3.943 -0.268 -6.577 -3.664 -1.965 2.396 C21 VJL 4 VJL C24 C5 C 0 1 N N N 8.977 -0.122 -8.122 -8.754 0.495 0.139 C24 VJL 5 VJL C11 C6 C 0 1 N N N 9.898 -3.433 -3.521 1.713 -0.783 -0.898 C11 VJL 6 VJL C12 C7 C 0 1 Y N N 9.586 -3.571 -4.986 0.425 -0.315 -0.351 C12 VJL 7 VJL C14 C8 C 0 1 Y N N 10.005 -4.061 -7.308 -0.780 1.283 1.000 C14 VJL 8 VJL C18 C9 C 0 1 N N N 5.609 -2.134 -6.318 -3.981 -2.283 -0.108 C18 VJL 9 VJL C23 C10 C 0 1 N N N 7.751 0.110 -9.035 -7.433 -0.237 -0.104 C23 VJL 10 VJL C25 C11 C 0 1 N N N 7.903 1.590 -9.442 -7.758 -1.639 -0.624 C25 VJL 11 VJL O3 O1 O 0 1 N N N 6.023 -1.503 -5.381 -4.141 -3.193 -0.893 O3 VJL 12 VJL O6 O2 O 0 1 N N N 9.693 -4.135 -10.165 -3.971 3.425 1.127 O6 VJL 13 VJL N7 N1 N 0 1 N N N 7.978 -3.686 -8.840 -3.190 1.384 0.577 N7 VJL 14 VJL N4 N2 N 0 1 N N N 6.480 -2.934 -7.031 -3.152 -1.221 -0.255 N4 VJL 15 VJL N6 N3 N 0 1 N N N 7.232 -2.010 -10.399 -5.456 0.965 -0.906 N6 VJL 16 VJL N5 N4 N 0 1 N N N 5.661 -1.027 -8.319 -5.471 -0.864 1.163 N5 VJL 17 VJL O4 O3 O 0 1 N N N 6.540 0.698 -7.086 -7.239 -0.083 2.289 O4 VJL 18 VJL O5 O4 O 0 1 N N N 8.206 -0.179 -11.366 -7.162 0.669 -2.289 O5 VJL 19 VJL C16 C12 C 0 1 Y N N 7.782 -3.263 -6.591 -1.962 -0.500 -0.194 C16 VJL 20 VJL C27 C13 C 0 1 N N N 7.798 -3.171 -11.159 -4.887 2.315 -0.822 C27 VJL 21 VJL C30 C14 C 0 1 N N N 8.528 -3.947 -10.060 -3.978 2.455 0.400 C30 VJL 22 VJL C19 C15 C 0 1 N N N 4.673 -1.407 -7.298 -4.698 -2.094 1.276 C19 VJL 23 VJL C17 C16 C 0 1 Y N N 8.288 -3.206 -5.299 -0.754 -0.965 -0.725 C17 VJL 24 VJL C22 C17 C 0 1 N N N 6.484 0.036 -8.131 -6.717 -0.382 1.237 C22 VJL 25 VJL C29 C18 C 0 1 N N N 6.706 -4.089 -11.714 -4.075 2.597 -2.088 C29 VJL 26 VJL C26 C19 C 0 1 N N N 7.874 -0.792 -10.328 -6.674 0.503 -1.191 C26 VJL 27 VJL C28 C20 C 0 1 N N N 8.808 -2.923 -12.286 -6.025 3.333 -0.721 C28 VJL 28 VJL N3 N5 N 0 1 N N N 10.458 -4.419 -2.708 2.859 -0.167 -0.546 N3 VJL 29 VJL C10 C21 C 0 1 N N N 9.908 -4.204 -1.274 4.138 -0.631 -1.089 C10 VJL 30 VJL C9 C22 C 0 1 N N N 10.303 -3.079 -0.317 5.271 0.233 -0.533 C9 VJL 31 VJL C8 C23 C 0 1 N N N 11.780 -2.624 -0.396 6.607 -0.252 -1.101 C8 VJL 32 VJL C6 C24 C 0 1 N N N 12.007 -1.482 0.528 7.741 0.613 -0.545 C6 VJL 33 VJL C5 C25 C 0 1 N N S 13.356 -0.755 0.338 9.077 0.128 -1.113 C5 VJL 34 VJL C2 C26 C 0 1 N N S 13.559 0.618 1.011 10.242 0.975 -0.566 C2 VJL 35 VJL N1 N6 N 0 1 N N N 13.078 0.597 2.402 9.879 1.501 0.759 N1 VJL 36 VJL C1 C27 C 0 1 N N N 14.128 0.823 3.227 10.764 1.058 1.663 C1 VJL 37 VJL O1 O5 O 0 1 N N N 14.037 0.812 4.447 10.704 1.340 2.844 O1 VJL 38 VJL N2 N7 N 0 1 N N N 15.299 0.992 2.539 11.721 0.275 1.146 N2 VJL 39 VJL C3 C28 C 0 1 N N R 15.121 0.884 1.106 11.500 0.138 -0.302 C3 VJL 40 VJL C4 C29 C 0 1 N N N 15.882 -0.383 0.588 11.297 -1.350 -0.646 C4 VJL 41 VJL S1 S1 S 0 1 N N N 14.751 -1.767 0.875 9.476 -1.557 -0.492 S1 VJL 42 VJL O2 O6 O 0 1 N N N 9.091 -2.789 -2.918 1.741 -1.725 -1.667 O2 VJL 43 VJL CO1 CO1 CO 0 0 N N R 6.402 -2.697 -8.860 -4.325 0.077 0.142 CO1 VJL 44 VJL H1 H1 H 0 1 N N N 11.472 -4.257 -5.752 1.343 1.202 0.852 H1 VJL 45 VJL H2 H2 H 0 1 N N N 2.941 -2.667 -7.007 -6.343 -3.376 0.736 H2 VJL 46 VJL H3 H3 H 0 1 N N N 3.104 -1.993 -8.664 -5.041 -4.190 1.635 H3 VJL 47 VJL H4 H4 H 0 1 N N N 4.170 -3.337 -8.132 -6.166 -3.105 2.486 H4 VJL 48 VJL H5 H5 H 0 1 N N N 3.238 -0.689 -5.845 -3.082 -2.884 2.461 H5 VJL 49 VJL H6 H6 H 0 1 N N N 4.676 0.366 -6.057 -2.999 -1.128 2.182 H6 VJL 50 VJL H7 H7 H 0 1 N N N 3.391 0.337 -7.312 -4.174 -1.791 3.343 H7 VJL 51 VJL H8 H8 H 0 1 N N N 8.890 0.506 -7.223 -8.551 1.478 0.564 H8 VJL 52 VJL H9 H9 H 0 1 N N N 9.019 -1.181 -7.827 -9.284 0.611 -0.807 H9 VJL 53 VJL H10 H10 H 0 1 N N N 9.895 0.143 -8.667 -9.368 -0.081 0.831 H10 VJL 54 VJL H11 H11 H 0 1 N N N 10.673 -4.389 -8.091 -0.789 2.120 1.682 H11 VJL 55 VJL H12 H12 H 0 1 N N N 7.819 2.227 -8.549 -8.401 -2.152 0.090 H12 VJL 56 VJL H13 H13 H 0 1 N N N 8.887 1.742 -9.910 -8.270 -1.560 -1.583 H13 VJL 57 VJL H14 H14 H 0 1 N N N 7.112 1.856 -10.158 -6.833 -2.202 -0.752 H14 VJL 58 VJL H15 H15 H 0 1 N N N 7.642 -2.862 -4.505 -0.734 -1.798 -1.413 H15 VJL 59 VJL H16 H16 H 0 1 N N N 5.961 -4.289 -10.930 -4.725 2.527 -2.960 H16 VJL 60 VJL H17 H17 H 0 1 N N N 6.216 -3.600 -12.569 -3.650 3.599 -2.031 H17 VJL 61 VJL H18 H18 H 0 1 N N N 7.156 -5.037 -12.042 -3.271 1.866 -2.174 H18 VJL 62 VJL H19 H19 H 0 1 N N N 9.610 -2.264 -11.922 -6.617 3.129 0.171 H19 VJL 63 VJL H20 H20 H 0 1 N N N 9.239 -3.882 -12.609 -5.608 4.338 -0.658 H20 VJL 64 VJL H21 H21 H 0 1 N N N 8.299 -2.445 -13.136 -6.660 3.258 -1.604 H21 VJL 65 VJL H22 H22 H 0 1 N N N 11.096 -5.133 -2.997 2.836 0.584 0.068 H22 VJL 66 VJL H23 H23 H 0 1 N N N 8.819 -4.110 -1.395 4.299 -1.670 -0.802 H23 VJL 67 VJL H24 H24 H 0 1 N N N 10.138 -5.135 -0.735 4.120 -0.553 -2.176 H24 VJL 68 VJL H25 H25 H 0 1 N N N 9.668 -2.208 -0.537 5.110 1.272 -0.821 H25 VJL 69 VJL H26 H26 H 0 1 N N N 10.109 -3.424 0.709 5.289 0.155 0.554 H26 VJL 70 VJL H27 H27 H 0 1 N N N 12.435 -3.460 -0.110 6.768 -1.291 -0.814 H27 VJL 71 VJL H28 H28 H 0 1 N N N 12.011 -2.312 -1.425 6.590 -0.174 -2.188 H28 VJL 72 VJL H29 H29 H 0 1 N N N 11.199 -0.751 0.374 7.580 1.652 -0.832 H29 VJL 73 VJL H30 H30 H 0 1 N N N 11.965 -1.862 1.559 7.758 0.534 0.542 H30 VJL 74 VJL H31 H31 H 0 1 N N N 13.507 -0.618 -0.743 9.061 0.144 -2.202 H31 VJL 75 VJL H32 H32 H 0 1 N N N 13.075 1.413 0.425 10.469 1.791 -1.253 H32 VJL 76 VJL H33 H33 H 0 1 N N N 12.133 0.442 2.690 9.122 2.076 0.948 H33 VJL 77 VJL H34 H34 H 0 1 N N N 16.180 1.170 2.977 12.444 -0.135 1.646 H34 VJL 78 VJL H35 H35 H 0 1 N N N 15.411 1.790 0.554 12.347 0.545 -0.854 H35 VJL 79 VJL H36 H36 H 0 1 N N N 16.818 -0.527 1.148 11.625 -1.560 -1.664 H36 VJL 80 VJL H37 H37 H 0 1 N N N 16.108 -0.286 -0.484 11.819 -1.987 0.068 H37 VJL 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJL C28 C27 SING N N 1 VJL C29 C27 SING N N 2 VJL O5 C26 DOUB N N 3 VJL C27 N6 SING N N 4 VJL C27 C30 SING N N 5 VJL N6 C26 SING N N 6 VJL N6 CO1 SING N N 7 VJL C26 C23 SING N N 8 VJL O6 C30 DOUB N N 9 VJL C30 N7 SING N N 10 VJL C25 C23 SING N N 11 VJL C23 C22 SING N N 12 VJL C23 C24 SING N N 13 VJL CO1 N7 SING N N 14 VJL CO1 N5 SING N N 15 VJL CO1 N4 SING N N 16 VJL N7 C15 SING N N 17 VJL N5 C22 SING N N 18 VJL N5 C19 SING N N 19 VJL C22 O4 DOUB N N 20 VJL C20 C19 SING N N 21 VJL C15 C14 DOUB Y N 22 VJL C15 C16 SING Y N 23 VJL C14 C13 SING Y N 24 VJL C19 C21 SING N N 25 VJL C19 C18 SING N N 26 VJL N4 C16 SING N N 27 VJL N4 C18 SING N N 28 VJL C16 C17 DOUB Y N 29 VJL C18 O3 DOUB N N 30 VJL C13 C12 DOUB Y N 31 VJL C17 C12 SING Y N 32 VJL C12 C11 SING N N 33 VJL C11 O2 DOUB N N 34 VJL C11 N3 SING N N 35 VJL N3 C10 SING N N 36 VJL C10 C9 SING N N 37 VJL C8 C9 SING N N 38 VJL C8 C6 SING N N 39 VJL C5 C6 SING N N 40 VJL C5 S1 SING N N 41 VJL C5 C2 SING N N 42 VJL C4 S1 SING N N 43 VJL C4 C3 SING N N 44 VJL C2 C3 SING N N 45 VJL C2 N1 SING N N 46 VJL C3 N2 SING N N 47 VJL N1 C1 SING N N 48 VJL N2 C1 SING N N 49 VJL C1 O1 DOUB N N 50 VJL C13 H1 SING N N 51 VJL C20 H2 SING N N 52 VJL C20 H3 SING N N 53 VJL C20 H4 SING N N 54 VJL C21 H5 SING N N 55 VJL C21 H6 SING N N 56 VJL C21 H7 SING N N 57 VJL C24 H8 SING N N 58 VJL C24 H9 SING N N 59 VJL C24 H10 SING N N 60 VJL C14 H11 SING N N 61 VJL C25 H12 SING N N 62 VJL C25 H13 SING N N 63 VJL C25 H14 SING N N 64 VJL C17 H15 SING N N 65 VJL C29 H16 SING N N 66 VJL C29 H17 SING N N 67 VJL C29 H18 SING N N 68 VJL C28 H19 SING N N 69 VJL C28 H20 SING N N 70 VJL C28 H21 SING N N 71 VJL N3 H22 SING N N 72 VJL C10 H23 SING N N 73 VJL C10 H24 SING N N 74 VJL C9 H25 SING N N 75 VJL C9 H26 SING N N 76 VJL C8 H27 SING N N 77 VJL C8 H28 SING N N 78 VJL C6 H29 SING N N 79 VJL C6 H30 SING N N 80 VJL C5 H31 SING N N 81 VJL C2 H32 SING N N 82 VJL N1 H33 SING N N 83 VJL N2 H34 SING N N 84 VJL C3 H35 SING N N 85 VJL C4 H36 SING N N 86 VJL C4 H37 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJL InChI InChI 1.06 "InChI=1S/C29H41N7O6S.Co/c1-27(2)22(38)35-28(3,4)24(40)31-16-11-10-15(13-17(16)32-25(41)29(5,6)36-23(27)39)21(37)30-12-8-7-9-19-20-18(14-43-19)33-26(42)34-20;/h10-11,13,18-20H,7-9,12,14H2,1-6H3,(H7,30,31,32,33,34,35,36,37,38,39,40,41,42);/q;+4/p-4/t18-,19-,20-;/m0./s1" VJL InChIKey InChI 1.06 TULPYLAKDFRJPS-HBSNOMOYSA-J VJL SMILES_CANONICAL CACTVS 3.385 "CC1(C)N2C(=O)C(C)(C)C(=O)N3C(C)(C)C(=O)N4c5cc(ccc5N(C1=O)[Co@]234)C(=O)NCCCC[C@@H]6SC[C@@H]7NC(=O)N[C@H]67" VJL SMILES CACTVS 3.385 "CC1(C)N2C(=O)C(C)(C)C(=O)N3C(C)(C)C(=O)N4c5cc(ccc5N(C1=O)[Co]234)C(=O)NCCCC[CH]6SC[CH]7NC(=O)N[CH]67" VJL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N2C(C(=O)N3[Co]24N(c5c3ccc(c5)C(=O)NCCCC[C@H]6[C@@H]7[C@H](CS6)NC(=O)N7)C(=O)C(N4C1=O)(C)C)(C)C)C" VJL SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N2C(C(=O)N3[Co]24N(c5c3ccc(c5)C(=O)NCCCCC6C7C(CS6)NC(=O)N7)C(=O)C(N4C1=O)(C)C)(C)C)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJL "Create component" 2023-03-09 PDBE VJL "Initial release" 2023-10-18 RCSB #