data_VJT # _chem_comp.id VJT _chem_comp.name "(2-(4-(beta-L-fucopyranosylethynyl)phenyl)-2-methylpropan-1-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-20 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.395 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OLU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJT N1 N1 N 0 1 N N N 6.292 8.439 1.319 7.580 -1.022 -0.034 N1 VJT 1 VJT C4 C1 C 0 1 N N S 5.938 15.234 10.976 -5.429 0.264 -0.257 C4 VJT 2 VJT C5 C2 C 0 1 N N S 7.196 14.426 10.748 -4.758 1.306 0.642 C5 VJT 3 VJT C6 C3 C 0 1 N N N 8.436 15.275 10.694 -5.252 2.703 0.261 C6 VJT 4 VJT C7 C4 C 0 1 N N N 5.978 12.228 8.056 -1.310 0.030 0.638 C7 VJT 5 VJT C8 C5 C 0 1 N N N 5.865 11.782 6.967 -0.147 0.071 0.489 C8 VJT 6 VJT C10 C6 C 0 1 Y N N 4.978 10.142 5.364 2.056 -0.998 0.589 C10 VJT 7 VJT C13 C7 C 0 1 Y N N 5.694 11.843 3.278 3.248 1.335 -0.322 C13 VJT 8 VJT C15 C8 C 0 1 N N N 4.738 10.300 1.483 5.513 0.275 -0.229 C15 VJT 9 VJT C17 C9 C 0 1 N N N 4.334 11.535 0.672 5.831 0.587 -1.692 C17 VJT 10 VJT O5 O1 O 0 1 N N N 7.101 13.762 9.479 -3.341 1.239 0.471 O5 VJT 11 VJT C3 C10 C 0 1 N N R 4.744 14.305 10.934 -4.884 -1.125 0.091 C3 VJT 12 VJT C2 C11 C 0 1 N N S 4.668 13.508 9.667 -3.360 -1.118 -0.065 C2 VJT 13 VJT C1 C12 C 0 1 N N R 6.011 12.817 9.401 -2.769 -0.022 0.826 C1 VJT 14 VJT O2 O2 O 0 1 N N N 3.610 12.571 9.743 -2.834 -2.387 0.327 O2 VJT 15 VJT O3 O3 O 0 1 N N N 3.531 15.056 11.093 -5.450 -2.095 -0.792 O3 VJT 16 VJT O4 O4 O 0 1 N N N 5.887 16.242 9.972 -5.145 0.560 -1.625 O4 VJT 17 VJT C9 C13 C 0 1 Y N N 5.622 11.346 5.634 1.273 0.121 0.306 C9 VJT 18 VJT C11 C14 C 0 1 Y N N 4.688 9.790 4.045 3.423 -0.942 0.414 C11 VJT 19 VJT C12 C15 C 0 1 Y N N 5.031 10.641 2.963 4.018 0.221 -0.040 C12 VJT 20 VJT C14 C16 C 0 1 Y N N 5.982 12.178 4.571 1.879 1.290 -0.157 C14 VJT 21 VJT C18 C17 C 0 1 N N N 6.053 9.799 0.853 6.124 -1.075 0.150 C18 VJT 22 VJT C16 C18 C 0 1 N N N 3.606 9.277 1.366 6.100 1.369 0.665 C16 VJT 23 VJT H1 H1 H 0 1 N N N 7.142 8.094 0.921 8.008 -1.903 0.209 H1 VJT 24 VJT H2 H2 H 0 1 N N N 6.366 8.437 2.316 7.816 -0.754 -0.978 H2 VJT 25 VJT H4 H4 H 0 1 N N N 5.991 15.698 11.972 -6.506 0.283 -0.095 H4 VJT 26 VJT H5 H5 H 0 1 N N N 7.299 13.686 11.556 -5.008 1.103 1.683 H5 VJT 27 VJT H6 H6 H 0 1 N N N 8.557 15.809 11.648 -6.333 2.753 0.390 H6 VJT 28 VJT H7 H7 H 0 1 N N N 9.312 14.633 10.519 -4.774 3.444 0.900 H7 VJT 29 VJT H8 H8 H 0 1 N N N 8.346 16.004 9.875 -5.001 2.905 -0.780 H8 VJT 30 VJT H9 H9 H 0 1 N N N 4.703 9.482 6.173 1.593 -1.906 0.947 H9 VJT 31 VJT H10 H10 H 0 1 N N N 5.981 12.514 2.481 3.718 2.239 -0.680 H10 VJT 32 VJT H11 H11 H 0 1 N N N 3.395 11.946 1.072 5.396 1.550 -1.962 H11 VJT 33 VJT H12 H12 H 0 1 N N N 5.126 12.295 0.742 6.912 0.627 -1.829 H12 VJT 34 VJT H13 H13 H 0 1 N N N 4.190 11.251 -0.381 5.413 -0.192 -2.329 H13 VJT 35 VJT H14 H14 H 0 1 N N N 4.837 13.600 11.773 -5.145 -1.372 1.120 H14 VJT 36 VJT H15 H15 H 0 1 N N N 4.478 14.203 8.836 -3.101 -0.921 -1.105 H15 VJT 37 VJT H16 H16 H 0 1 N N N 6.152 12.021 10.148 -2.994 -0.242 1.870 H16 VJT 38 VJT H17 H17 H 0 1 N N N 2.793 13.027 9.908 -1.872 -2.454 0.253 H17 VJT 39 VJT H18 H18 H 0 1 N N N 3.575 15.563 11.895 -5.148 -3.000 -0.629 H18 VJT 40 VJT H19 H19 H 0 1 N N N 5.105 16.768 10.090 -5.461 1.428 -1.913 H19 VJT 41 VJT H20 H20 H 0 1 N N N 4.193 8.851 3.844 4.031 -1.808 0.632 H20 VJT 42 VJT H21 H21 H 0 1 N N N 6.498 13.104 4.775 1.278 2.160 -0.376 H21 VJT 43 VJT H22 H22 H 0 1 N N N 6.885 10.450 1.161 5.705 -1.854 -0.487 H22 VJT 44 VJT H23 H23 H 0 1 N N N 5.967 9.807 -0.244 5.897 -1.297 1.192 H23 VJT 45 VJT H24 H24 H 0 1 N N N 3.866 8.375 1.939 5.873 1.147 1.708 H24 VJT 46 VJT H25 H25 H 0 1 N N N 2.677 9.711 1.766 7.181 1.409 0.529 H25 VJT 47 VJT H26 H26 H 0 1 N N N 3.461 9.010 0.309 5.665 2.332 0.396 H26 VJT 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJT C17 C15 SING N N 1 VJT C18 N1 SING N N 2 VJT C18 C15 SING N N 3 VJT C16 C15 SING N N 4 VJT C15 C12 SING N N 5 VJT C12 C13 DOUB Y N 6 VJT C12 C11 SING Y N 7 VJT C13 C14 SING Y N 8 VJT C11 C10 DOUB Y N 9 VJT C14 C9 DOUB Y N 10 VJT C10 C9 SING Y N 11 VJT C9 C8 SING N N 12 VJT C8 C7 TRIP N N 13 VJT C7 C1 SING N N 14 VJT C1 O5 SING N N 15 VJT C1 C2 SING N N 16 VJT O5 C5 SING N N 17 VJT C2 O2 SING N N 18 VJT C2 C3 SING N N 19 VJT O4 C4 SING N N 20 VJT C6 C5 SING N N 21 VJT C5 C4 SING N N 22 VJT C3 C4 SING N N 23 VJT C3 O3 SING N N 24 VJT N1 H1 SING N N 25 VJT N1 H2 SING N N 26 VJT C4 H4 SING N N 27 VJT C5 H5 SING N N 28 VJT C6 H6 SING N N 29 VJT C6 H7 SING N N 30 VJT C6 H8 SING N N 31 VJT C10 H9 SING N N 32 VJT C13 H10 SING N N 33 VJT C17 H11 SING N N 34 VJT C17 H12 SING N N 35 VJT C17 H13 SING N N 36 VJT C3 H14 SING N N 37 VJT C2 H15 SING N N 38 VJT C1 H16 SING N N 39 VJT O2 H17 SING N N 40 VJT O3 H18 SING N N 41 VJT O4 H19 SING N N 42 VJT C11 H20 SING N N 43 VJT C14 H21 SING N N 44 VJT C18 H22 SING N N 45 VJT C18 H23 SING N N 46 VJT C16 H24 SING N N 47 VJT C16 H25 SING N N 48 VJT C16 H26 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJT InChI InChI 1.03 "InChI=1S/C18H25NO4/c1-11-15(20)17(22)16(21)14(23-11)9-6-12-4-7-13(8-5-12)18(2,3)10-19/h4-5,7-8,11,14-17,20-22H,10,19H2,1-3H3/t11-,14+,15+,16+,17+/m0/s1" VJT InChIKey InChI 1.03 OLKQUCDVBRXNDQ-WVRYCFJFSA-N VJT SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@H](C#Cc2ccc(cc2)C(C)(C)CN)[C@@H](O)[C@H](O)[C@@H]1O" VJT SMILES CACTVS 3.385 "C[CH]1O[CH](C#Cc2ccc(cc2)C(C)(C)CN)[CH](O)[CH](O)[CH]1O" VJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)C#Cc2ccc(cc2)C(C)(C)CN)O)O)O" VJT SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)C#Cc2ccc(cc2)C(C)(C)CN)O)O)O" # _pdbx_chem_comp_identifier.comp_id VJT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VJT _pdbx_chem_comp_synonyms.name "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJT "Create component" 2021-05-20 PDBE VJT "Initial release" 2022-06-01 RCSB ##