data_VJX # _chem_comp.id VJX _chem_comp.name Rebamipide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H15 Cl N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-(4-chlorobenzoyl)-3-(2-oxo-1,2-dihydroquinolin-4-yl)-L-alanine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-13 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.786 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U5M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJX C10 C1 C 0 1 N N N N N N -14.381 -3.399 22.872 2.264 -0.209 -0.970 C10 VJX 1 VJX C13 C2 C 0 1 N N N N N N -14.908 -4.219 23.762 1.543 -1.202 -1.547 C13 VJX 2 VJX C15 C3 C 0 1 N N N N N N -16.355 -4.611 23.848 1.777 -2.548 -1.193 C15 VJX 3 VJX C17 C4 C 0 1 Y N N N N N -17.581 -2.616 20.895 4.435 -2.275 1.282 C17 VJX 4 VJX C20 C5 C 0 1 Y N N N N N -17.121 -1.763 19.921 5.194 -1.293 1.881 C20 VJX 5 VJX C21 C6 C 0 1 Y N N N N N -12.647 -7.994 22.734 -2.419 0.546 0.482 C21 VJX 6 VJX C22 C7 C 0 1 Y N N N N N -12.198 -9.218 22.233 -2.794 -0.067 -0.715 C22 VJX 7 VJX C24 C8 C 0 1 Y N N N N N -12.340 -10.443 22.926 -4.028 -0.675 -0.818 C24 VJX 8 VJX C26 C9 C 0 1 Y N N N N N -12.955 -10.414 24.179 -4.894 -0.677 0.263 C26 VJX 9 VJX CL01 CL1 CL 0 0 N N N N N N -13.145 -11.961 25.094 -6.445 -1.445 0.126 CL01 VJX 10 VJX O02 O1 O 0 1 N N N N N N -10.244 -2.574 21.594 -0.178 3.787 -0.913 O02 VJX 11 VJX O03 O2 O 0 1 N N N N N N -16.901 -5.333 24.631 1.117 -3.425 -1.724 O03 VJX 12 VJX O04 O3 O 0 1 N N N N N N -9.723 -4.694 22.141 1.981 4.134 -0.591 O04 VJX 13 VJX O05 O4 O 0 1 N N N N N N -12.436 -6.722 20.742 -0.778 1.742 1.638 O05 VJX 14 VJX N06 N1 N 0 1 N N N N N N -12.285 -5.450 22.612 -0.255 1.208 -0.453 N06 VJX 15 VJX N07 N2 N 0 1 N N N N N N -17.185 -4.010 22.826 2.709 -2.887 -0.285 N07 VJX 16 VJX C08 C10 C 0 1 N N N N N N -12.879 -3.031 22.814 2.024 1.232 -1.340 C08 VJX 17 VJX C09 C11 C 0 1 N N S N N N -12.082 -4.099 21.999 1.051 1.860 -0.340 C09 VJX 18 VJX C11 C12 C 0 1 Y N N N N N -15.280 -2.813 21.823 3.277 -0.567 0.024 C11 VJX 19 VJX C12 C13 C 0 1 Y N N N N N -16.676 -3.140 21.842 3.475 -1.925 0.338 C12 VJX 20 VJX C14 C14 C 0 1 Y N N N N N -14.882 -1.934 20.795 4.051 0.413 0.654 C14 VJX 21 VJX C16 C15 C 0 1 N N N N N N -10.505 -3.729 21.901 0.906 3.331 -0.636 C16 VJX 22 VJX C18 C16 C 0 1 N N N N N N -12.458 -6.653 21.946 -1.100 1.204 0.597 C18 VJX 23 VJX C19 C17 C 0 1 Y N N N N N -15.752 -1.416 19.870 4.996 0.045 1.569 C19 VJX 24 VJX C23 C18 C 0 1 Y N N N N N -13.258 -8.033 24.015 -3.296 0.540 1.568 C23 VJX 25 VJX C25 C19 C 0 1 Y N N N N N -13.422 -9.228 24.747 -4.527 -0.071 1.453 C25 VJX 26 VJX H1 H1 H 0 1 N N N N N N -14.239 -4.646 24.494 0.787 -0.961 -2.280 H1 VJX 27 VJX H2 H2 H 0 1 N N N N N N -18.627 -2.883 20.935 4.597 -3.313 1.531 H2 VJX 28 VJX H3 H3 H 0 1 N N N N N N -17.807 -1.357 19.193 5.939 -1.567 2.614 H3 VJX 29 VJX H4 H4 H 0 1 N N N N N N -11.717 -9.230 21.266 -2.119 -0.066 -1.559 H4 VJX 30 VJX H5 H5 H 0 1 N N N N N N -11.985 -11.370 22.500 -4.319 -1.149 -1.743 H5 VJX 31 VJX H6 H6 H 0 1 N N N N N N -8.823 -4.403 22.050 1.838 5.070 -0.788 H6 VJX 32 VJX H7 H7 H 0 1 N N N N N N -12.297 -5.488 23.611 -0.512 0.779 -1.285 H7 VJX 33 VJX H8 H8 H 0 1 N N N N N N -18.162 -4.222 22.818 2.844 -3.822 -0.065 H8 VJX 34 VJX H9 H9 H 0 1 N N N N N N -12.478 -2.984 23.837 2.969 1.776 -1.318 H9 VJX 35 VJX H10 H10 H 0 1 N N N N N N -12.766 -2.049 22.331 1.598 1.284 -2.342 H10 VJX 36 VJX H11 H11 H 0 1 N N N N N N -12.480 -4.111 20.974 1.436 1.730 0.672 H11 VJX 37 VJX H12 H12 H 0 1 N N N N N N -13.841 -1.655 20.733 3.903 1.456 0.417 H12 VJX 38 VJX H13 H13 H 0 1 N N N N N N -15.392 -0.745 19.105 5.600 0.801 2.049 H13 VJX 39 VJX H14 H14 H 0 1 N N N N N N -13.612 -7.109 24.447 -3.011 1.013 2.496 H14 VJX 40 VJX H15 H15 H 0 1 N N N N N N -13.895 -9.225 25.718 -5.207 -0.076 2.292 H15 VJX 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJX C19 C20 SING Y N 1 VJX C19 C14 DOUB Y N 2 VJX C20 C17 DOUB Y N 3 VJX O05 C18 DOUB N N 4 VJX C14 C11 SING Y N 5 VJX C17 C12 SING Y N 6 VJX O02 C16 DOUB N N 7 VJX C11 C12 DOUB Y N 8 VJX C11 C10 SING N N 9 VJX C12 N07 SING N N 10 VJX C16 C09 SING N N 11 VJX C16 O04 SING N N 12 VJX C18 N06 SING N N 13 VJX C18 C21 SING N N 14 VJX C09 N06 SING N N 15 VJX C09 C08 SING N N 16 VJX C22 C21 DOUB Y N 17 VJX C22 C24 SING Y N 18 VJX C21 C23 SING Y N 19 VJX C08 C10 SING N N 20 VJX N07 C15 SING N N 21 VJX C10 C13 DOUB N N 22 VJX C24 C26 DOUB Y N 23 VJX C13 C15 SING N N 24 VJX C15 O03 DOUB N N 25 VJX C23 C25 DOUB Y N 26 VJX C26 C25 SING Y N 27 VJX C26 CL01 SING N N 28 VJX C13 H1 SING N N 29 VJX C17 H2 SING N N 30 VJX C20 H3 SING N N 31 VJX C22 H4 SING N N 32 VJX C24 H5 SING N N 33 VJX O04 H6 SING N N 34 VJX N06 H7 SING N N 35 VJX N07 H8 SING N N 36 VJX C08 H9 SING N N 37 VJX C08 H10 SING N N 38 VJX C09 H11 SING N N 39 VJX C14 H12 SING N N 40 VJX C19 H13 SING N N 41 VJX C23 H14 SING N N 42 VJX C25 H15 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJX SMILES ACDLabs 12.01 "Clc1ccc(cc1)C(=O)NC(CC1=CC(=O)Nc2ccccc21)C(=O)O" VJX InChI InChI 1.06 "InChI=1S/C19H15ClN2O4/c20-13-7-5-11(6-8-13)18(24)22-16(19(25)26)9-12-10-17(23)21-15-4-2-1-3-14(12)15/h1-8,10,16H,9H2,(H,21,23)(H,22,24)(H,25,26)/t16-/m0/s1" VJX InChIKey InChI 1.06 ALLWOAVDORUJLA-INIZCTEOSA-N VJX SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](CC1=CC(=O)Nc2ccccc12)NC(=O)c3ccc(Cl)cc3" VJX SMILES CACTVS 3.385 "OC(=O)[CH](CC1=CC(=O)Nc2ccccc12)NC(=O)c3ccc(Cl)cc3" VJX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)C[C@@H](C(=O)O)NC(=O)c3ccc(cc3)Cl" VJX SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)CC(C(=O)O)NC(=O)c3ccc(cc3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VJX "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-chlorobenzoyl)-3-(2-oxo-1,2-dihydroquinolin-4-yl)-L-alanine" VJX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[(4-chlorophenyl)carbonylamino]-3-(2-oxidanylidene-1~{H}-quinolin-4-yl)propanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VJX _pdbx_chem_comp_synonyms.name "N-(4-chlorobenzoyl)-3-(2-oxo-1,2-dihydroquinolin-4-yl)-L-alanine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJX "Create component" 2023-09-13 RCSB VJX "Initial release" 2024-02-07 RCSB #