data_VK1 # _chem_comp.id VK1 _chem_comp.name "1-{6-[(3R)-3-methylmorpholin-4-yl]-2-(methylsulfanyl)pyrimidin-4-yl}cyclopropane-1-sulfonimidoamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H21 N5 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-18 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VK1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JTC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VK1 C10 C1 C 0 1 N N R -16.815 20.305 -6.076 3.310 0.590 -0.486 C10 VK1 1 VK1 C15 C2 C 0 1 N N N -15.915 18.071 -5.812 1.713 2.201 0.356 C15 VK1 2 VK1 C17 C3 C 0 1 Y N N -20.580 18.955 -6.634 0.532 -2.127 0.014 C17 VK1 3 VK1 C03 C4 C 0 1 N N N -20.512 15.281 -6.783 -2.730 -0.442 -0.334 C03 VK1 4 VK1 C04 C5 C 0 1 N N N -20.783 14.099 -5.847 -3.652 -1.630 -0.052 C04 VK1 5 VK1 C05 C6 C 0 1 N N N -19.499 14.134 -6.671 -3.509 -1.094 -1.478 C05 VK1 6 VK1 C06 C7 C 0 1 Y N N -20.057 16.737 -6.619 -1.244 -0.685 -0.276 C06 VK1 7 VK1 C07 C8 C 0 1 Y N N -18.737 17.047 -6.267 -0.358 0.357 -0.470 C07 VK1 8 VK1 C08 C9 C 0 1 Y N N -18.441 18.404 -6.131 1.011 0.088 -0.408 C08 VK1 9 VK1 C11 C10 C 0 1 N N N -16.370 20.397 -7.554 3.540 0.040 0.923 C11 VK1 10 VK1 C12 C11 C 0 1 N N N -15.718 20.826 -5.141 4.296 1.729 -0.758 C12 VK1 11 VK1 C14 C12 C 0 1 N N N -14.951 18.631 -4.765 2.716 3.323 0.075 C14 VK1 12 VK1 C19 C13 C 0 1 N N N -21.021 21.827 -6.238 2.895 -3.482 0.279 C19 VK1 13 VK1 N01 N1 N 0 1 N N N -22.660 16.366 -8.459 -2.392 1.611 1.562 N01 VK1 14 VK1 N09 N2 N 0 1 N N N -17.125 18.902 -5.783 1.936 1.102 -0.595 N09 VK1 15 VK1 N16 N3 N 0 1 Y N N -19.357 19.327 -6.324 1.414 -1.155 -0.166 N16 VK1 16 VK1 N20 N4 N 0 1 Y N N -20.952 17.703 -6.788 -0.773 -1.901 -0.039 N20 VK1 17 VK1 N21 N5 N 0 1 N N N -21.163 13.830 -9.091 -4.716 1.101 0.614 N21 VK1 18 VK1 O13 O1 O 0 1 N N N -14.629 19.952 -5.071 4.044 2.800 0.155 O13 VK1 19 VK1 O22 O2 O 0 1 N N N -21.149 15.701 -9.744 -3.141 2.228 -0.740 O22 VK1 20 VK1 S02 S1 S 0 1 N N R -21.414 15.175 -8.394 -3.277 1.195 0.226 S02 VK1 21 VK1 S18 S2 S 0 1 N N N -21.777 20.276 -6.856 1.107 -3.763 0.325 S18 VK1 22 VK1 H1 H1 H 0 1 N N N -17.717 20.920 -5.942 3.461 -0.205 -1.217 H1 VK1 23 VK1 H2 H2 H 0 1 N N N -16.169 17.028 -5.570 1.851 1.835 1.373 H2 VK1 24 VK1 H3 H3 H 0 1 N N N -15.453 18.114 -6.809 0.698 2.582 0.241 H3 VK1 25 VK1 H4 H4 H 0 1 N N N -20.740 14.240 -4.757 -3.183 -2.588 0.175 H4 VK1 26 VK1 H5 H5 H 0 1 N N N -21.573 13.374 -6.092 -4.587 -1.429 0.470 H5 VK1 27 VK1 H6 H6 H 0 1 N N N -19.365 13.435 -7.510 -4.350 -0.540 -1.894 H6 VK1 28 VK1 H7 H7 H 0 1 N N N -18.532 14.301 -6.175 -2.946 -1.699 -2.189 H7 VK1 29 VK1 H8 H8 H 0 1 N N N -17.992 16.281 -6.110 -0.716 1.357 -0.665 H8 VK1 30 VK1 H9 H9 H 0 1 N N N -16.131 21.442 -7.801 2.834 -0.767 1.117 H9 VK1 31 VK1 H10 H10 H 0 1 N N N -15.479 19.771 -7.708 4.558 -0.339 1.003 H10 VK1 32 VK1 H11 H11 H 0 1 N N N -17.184 20.044 -8.204 3.390 0.837 1.652 H11 VK1 33 VK1 H12 H12 H 0 1 N N N -15.368 21.800 -5.513 5.316 1.367 -0.623 H12 VK1 34 VK1 H13 H13 H 0 1 N N N -16.140 20.949 -4.133 4.168 2.084 -1.781 H13 VK1 35 VK1 H14 H14 H 0 1 N N N -15.427 18.592 -3.774 2.542 3.725 -0.923 H14 VK1 36 VK1 H15 H15 H 0 1 N N N -14.033 18.025 -4.755 2.591 4.115 0.814 H15 VK1 37 VK1 H16 H16 H 0 1 N N N -21.733 22.657 -6.361 3.176 -3.092 -0.699 H16 VK1 38 VK1 H17 H17 H 0 1 N N N -20.771 21.714 -5.173 3.169 -2.761 1.050 H17 VK1 39 VK1 H18 H18 H 0 1 N N N -20.106 22.041 -6.809 3.416 -4.422 0.459 H18 VK1 40 VK1 H19 H19 H 0 1 N N N -23.177 16.355 -7.603 -2.452 1.076 2.369 H19 VK1 41 VK1 H20 H20 H 0 1 N N N -22.251 17.269 -8.590 -1.814 2.389 1.538 H20 VK1 42 VK1 H21 H21 H 0 1 N N N -20.954 13.945 -10.062 -4.989 1.311 1.521 H21 VK1 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VK1 O22 S02 DOUB N N 1 VK1 N21 S02 DOUB N N 2 VK1 N01 S02 SING N N 3 VK1 S02 C03 SING N N 4 VK1 C11 C10 SING N N 5 VK1 S18 C17 SING N N 6 VK1 S18 C19 SING N N 7 VK1 N20 C17 DOUB Y N 8 VK1 N20 C06 SING Y N 9 VK1 C03 C05 SING N N 10 VK1 C03 C06 SING N N 11 VK1 C03 C04 SING N N 12 VK1 C05 C04 SING N N 13 VK1 C17 N16 SING Y N 14 VK1 C06 C07 DOUB Y N 15 VK1 N16 C08 DOUB Y N 16 VK1 C07 C08 SING Y N 17 VK1 C08 N09 SING N N 18 VK1 C10 N09 SING N N 19 VK1 C10 C12 SING N N 20 VK1 C15 N09 SING N N 21 VK1 C15 C14 SING N N 22 VK1 C12 O13 SING N N 23 VK1 O13 C14 SING N N 24 VK1 C10 H1 SING N N 25 VK1 C15 H2 SING N N 26 VK1 C15 H3 SING N N 27 VK1 C04 H4 SING N N 28 VK1 C04 H5 SING N N 29 VK1 C05 H6 SING N N 30 VK1 C05 H7 SING N N 31 VK1 C07 H8 SING N N 32 VK1 C11 H9 SING N N 33 VK1 C11 H10 SING N N 34 VK1 C11 H11 SING N N 35 VK1 C12 H12 SING N N 36 VK1 C12 H13 SING N N 37 VK1 C14 H14 SING N N 38 VK1 C14 H15 SING N N 39 VK1 C19 H16 SING N N 40 VK1 C19 H17 SING N N 41 VK1 C19 H18 SING N N 42 VK1 N01 H19 SING N N 43 VK1 N01 H20 SING N N 44 VK1 N21 H21 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VK1 SMILES ACDLabs 12.01 "C1(N(CCOC1)c3cc(C2(CC2)S(N)(=N)=O)nc(n3)SC)C" VK1 InChI InChI 1.03 "InChI=1S/C13H21N5O2S2/c1-9-8-20-6-5-18(9)11-7-10(16-12(17-11)21-2)13(3-4-13)22(14,15)19/h7,9H,3-6,8H2,1-2H3,(H3,14,15,19)/t9-/m1/s1" VK1 InChIKey InChI 1.03 XGFQEZBAAOLAMH-SECBINFHSA-N VK1 SMILES_CANONICAL CACTVS 3.385 "CSc1nc(cc(n1)C2(CC2)[S@](N)(=N)=O)N3CCOC[C@H]3C" VK1 SMILES CACTVS 3.385 "CSc1nc(cc(n1)C2(CC2)[S](N)(=N)=O)N3CCOC[CH]3C" VK1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1COCCN1c2cc(nc(n2)SC)C3(CC3)S(=N)(=O)N" VK1 SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2cc(nc(n2)SC)C3(CC3)S(=N)(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VK1 "SYSTEMATIC NAME" ACDLabs 12.01 "1-{6-[(3R)-3-methylmorpholin-4-yl]-2-(methylsulfanyl)pyrimidin-4-yl}cyclopropane-1-sulfonimidoamide" VK1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-4-[6-[1-(azanylsulfonimidoyl)cyclopropyl]-2-methylsulfanyl-pyrimidin-4-yl]-3-methyl-morpholine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VK1 "Create component" 2020-08-18 RCSB VK1 "Initial release" 2021-08-25 RCSB ##