data_VK3 # _chem_comp.id VK3 _chem_comp.name MENADIONE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "VITAMIN K3; 2-METHYL-1,4-NAPHTHALENEDIONE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.180 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2QR2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VK3 C1K C1K C 0 1 N N N 34.006 14.994 33.258 1.677 -0.000 0.275 C1K VK3 1 VK3 O1K O1K O 0 1 N N N 33.215 14.480 34.059 2.854 -0.002 -0.025 O1K VK3 2 VK3 C2K C2K C 0 1 N N N 33.423 15.860 32.227 1.275 0.000 1.694 C2K VK3 3 VK3 C3K C3K C 0 1 N N N 34.233 16.448 31.282 -0.017 0.002 2.044 C3K VK3 4 VK3 C4K C4K C 0 1 N N N 35.699 16.281 31.319 -1.079 -0.002 1.020 C4K VK3 5 VK3 O4K O4K O 0 1 N N N 36.312 16.870 30.414 -2.247 -0.005 1.353 O4K VK3 6 VK3 C5K C5K C 0 1 Y N N 36.261 15.514 32.408 -0.716 0.002 -0.413 C5K VK3 7 VK3 C6K C6K C 0 1 Y N N 37.620 15.439 32.522 -1.697 0.002 -1.397 C6K VK3 8 VK3 C7K C7K C 0 1 Y N N 38.159 14.745 33.569 -1.331 0.001 -2.734 C7K VK3 9 VK3 C8K C8K C 0 1 Y N N 37.373 14.145 34.510 0.002 -0.000 -3.095 C8K VK3 10 VK3 C9K C9K C 0 1 Y N N 36.015 14.221 34.421 0.992 -0.000 -2.125 C9K VK3 11 VK3 C10 C10 C 0 1 Y N N 35.444 14.908 33.377 0.641 0.000 -0.780 C10 VK3 12 VK3 C11 C11 C 0 1 N N N 33.589 17.300 30.166 -0.392 0.003 3.503 C11 VK3 13 VK3 H2K1 1H2K H 0 0 N N N 32.343 16.075 32.160 2.035 -0.000 2.462 H2K1 VK3 14 VK3 H6K1 1H6K H 0 0 N N N 38.271 15.931 31.780 -2.741 0.004 -1.121 H6K1 VK3 15 VK3 H7K1 1H7K H 0 0 N N N 39.255 14.667 33.656 -2.093 0.002 -3.499 H7K1 VK3 16 VK3 H8K1 1H8K H 0 0 N N N 37.837 13.596 35.346 0.275 -0.000 -4.140 H8K1 VK3 17 VK3 H9K1 1H9K H 0 0 N N N 35.386 13.732 35.184 2.033 -0.001 -2.412 H9K1 VK3 18 VK3 H111 1H11 H 0 0 N N N 34.245 17.776 29.400 0.512 0.002 4.111 H111 VK3 19 VK3 H112 2H11 H 0 0 N N N 32.818 16.685 29.645 -0.979 0.894 3.727 H112 VK3 20 VK3 H113 3H11 H 0 0 N N N 32.956 18.088 30.636 -0.982 -0.885 3.728 H113 VK3 21 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VK3 C1K O1K DOUB N N 1 VK3 C1K C2K SING N N 2 VK3 C1K C10 SING N N 3 VK3 C2K C3K DOUB N N 4 VK3 C2K H2K1 SING N N 5 VK3 C3K C4K SING N N 6 VK3 C3K C11 SING N N 7 VK3 C4K O4K DOUB N N 8 VK3 C4K C5K SING N N 9 VK3 C5K C6K DOUB Y N 10 VK3 C5K C10 SING Y N 11 VK3 C6K C7K SING Y N 12 VK3 C6K H6K1 SING N N 13 VK3 C7K C8K DOUB Y N 14 VK3 C7K H7K1 SING N N 15 VK3 C8K C9K SING Y N 16 VK3 C8K H8K1 SING N N 17 VK3 C9K C10 DOUB Y N 18 VK3 C9K H9K1 SING N N 19 VK3 C11 H111 SING N N 20 VK3 C11 H112 SING N N 21 VK3 C11 H113 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VK3 SMILES ACDLabs 10.04 "O=C2c1c(cccc1)C(=O)C(=C2)C" VK3 SMILES_CANONICAL CACTVS 3.341 "CC1=CC(=O)c2ccccc2C1=O" VK3 SMILES CACTVS 3.341 "CC1=CC(=O)c2ccccc2C1=O" VK3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CC(=O)c2ccccc2C1=O" VK3 SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CC(=O)c2ccccc2C1=O" VK3 InChI InChI 1.03 "InChI=1S/C11H8O2/c1-7-6-10(12)8-4-2-3-5-9(8)11(7)13/h2-6H,1H3" VK3 InChIKey InChI 1.03 MJVAVZPDRWSRRC-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VK3 "SYSTEMATIC NAME" ACDLabs 10.04 "2-methylnaphthalene-1,4-dione" VK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-methylnaphthalene-1,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VK3 "Create component" 1999-07-08 RCSB VK3 "Modify descriptor" 2011-06-04 RCSB VK3 "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VK3 "VITAMIN K3" ? ? 2 VK3 "2-METHYL-1,4-NAPHTHALENEDIONE" ? ? ##