data_VK4 # _chem_comp.id VK4 _chem_comp.name "(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H36 Cl2 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-19 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.523 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VK4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JTW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VK4 C1 C1 C 0 1 Y N N -28.833 -3.604 -23.690 -1.132 -0.251 0.816 C1 VK4 1 VK4 C10 C2 C 0 1 N N N -26.840 -7.457 -24.103 4.294 1.984 -0.343 C10 VK4 2 VK4 C11 C3 C 0 1 N N R -26.344 -8.252 -25.297 5.562 1.608 -1.116 C11 VK4 3 VK4 C13 C4 C 0 1 N N N -27.551 -10.206 -24.902 5.519 -0.675 -0.030 C13 VK4 4 VK4 C14 C5 C 0 1 N N N -28.429 -9.340 -24.018 4.250 -0.274 0.731 C14 VK4 5 VK4 C15 C6 C 0 1 N N N -25.225 -10.262 -24.260 7.560 0.677 -0.051 C15 VK4 6 VK4 C17 C7 C 0 1 N N N -25.451 -11.742 -24.145 8.298 -0.474 0.584 C17 VK4 7 VK4 C18 C8 C 0 1 N N N -24.894 -12.349 -25.404 8.412 -1.658 -0.407 C18 VK4 8 VK4 C19 C9 C 0 1 N N N -23.956 -13.453 -25.006 9.642 -2.433 0.126 C19 VK4 9 VK4 C2 C10 C 0 1 Y N N -28.818 -3.274 -22.349 -0.992 -1.432 0.099 C2 VK4 10 VK4 C20 C11 C 0 1 N N N -23.582 -13.211 -23.572 10.616 -1.327 0.584 C20 VK4 11 VK4 C21 C12 C 0 1 N N N -24.605 -12.256 -23.003 9.761 -0.082 0.875 C21 VK4 12 VK4 C22 C13 C 0 1 N N N -25.261 -7.622 -26.133 6.472 2.832 -1.233 C22 VK4 13 VK4 C25 C14 C 0 1 N N N -27.653 -1.769 -24.833 -3.510 -0.240 0.726 C25 VK4 14 VK4 C27 C15 C 0 1 N N N -27.616 -1.110 -26.188 -4.844 0.016 1.378 C27 VK4 15 VK4 C28 C16 C 0 1 N N R -27.172 -2.070 -27.314 -5.964 -0.447 0.444 C28 VK4 16 VK4 C29 C17 C 0 1 N N N -27.190 -1.311 -28.657 -7.312 -0.303 1.155 C29 VK4 17 VK4 C3 C18 C 0 1 Y N N -28.949 -4.274 -21.397 0.232 -1.767 -0.451 C3 VK4 18 VK4 C30 C19 C 0 1 N N N -26.730 -2.233 -29.780 -8.419 -0.882 0.270 C30 VK4 19 VK4 C31 C20 C 0 1 N N N -26.935 -1.437 -31.071 -9.746 -0.740 0.970 C31 VK4 20 VK4 C34 C21 C 0 1 Y N N -25.800 -2.544 -26.960 -5.961 0.398 -0.803 C34 VK4 21 VK4 C35 C22 C 0 1 Y N N -24.713 -1.718 -27.102 -6.141 1.766 -0.711 C35 VK4 22 VK4 C36 C23 C 0 1 Y N N -23.450 -2.141 -26.755 -6.137 2.542 -1.856 C36 VK4 23 VK4 C37 C24 C 0 1 Y N N -23.266 -3.415 -26.257 -5.954 1.949 -3.091 C37 VK4 24 VK4 C38 C25 C 0 1 Y N N -24.348 -4.245 -26.114 -5.774 0.582 -3.183 C38 VK4 25 VK4 C39 C26 C 0 1 Y N N -25.607 -3.815 -26.456 -5.773 -0.193 -2.038 C39 VK4 26 VK4 C4 C27 C 0 1 Y N N -29.086 -5.595 -21.756 1.319 -0.927 -0.289 C4 VK4 27 VK4 C5 C28 C 0 1 Y N N -29.098 -5.908 -23.100 1.184 0.255 0.426 C5 VK4 28 VK4 C6 C29 C 0 1 Y N N -28.987 -4.920 -24.055 -0.042 0.594 0.979 C6 VK4 29 VK4 C9 C30 C 0 1 N N R -28.294 -7.839 -24.274 3.452 0.727 -0.108 C9 VK4 30 VK4 N12 N1 N 0 1 N N N -26.235 -9.662 -24.984 6.262 0.542 -0.386 N12 VK4 31 VK4 N24 N2 N 0 1 N N N -28.722 -2.635 -24.720 -2.372 0.091 1.369 N24 VK4 32 VK4 O16 O1 O 0 1 N N N -24.254 -9.717 -23.749 8.135 1.724 -0.261 O16 VK4 33 VK4 O26 O2 O 0 1 N N N -26.847 -1.503 -23.940 -3.459 -0.743 -0.376 O26 VK4 34 VK4 O32 O3 O 0 1 N N N -26.042 -0.595 -31.339 -10.867 -1.181 0.378 O32 VK4 35 VK4 O33 O4 O 0 1 N N N -27.951 -1.736 -31.753 -9.801 -0.228 2.063 O33 VK4 36 VK4 O8 O5 O 0 1 N N N -29.262 -7.242 -23.407 2.253 1.080 0.584 O8 VK4 37 VK4 CL2 CL1 CL 0 0 N N N -28.965 -3.852 -19.713 0.405 -3.244 -1.345 CL2 VK4 38 VK4 CL7 CL2 CL 0 0 N N N -29.025 -5.271 -25.751 -0.213 2.071 1.875 CL7 VK4 39 VK4 H1 H1 H 0 1 N N N -26.415 -7.806 -23.150 4.569 2.422 0.617 H1 VK4 40 VK4 H2 H2 H 0 1 N N N -26.667 -6.376 -24.207 3.716 2.706 -0.920 H2 VK4 41 VK4 H3 H3 H 0 1 N N N -27.211 -8.219 -25.974 5.292 1.254 -2.111 H3 VK4 42 VK4 H4 H4 H 0 1 N N N -27.987 -10.253 -25.911 6.139 -1.310 0.603 H4 VK4 43 VK4 H5 H5 H 0 1 N N N -27.498 -11.220 -24.478 5.246 -1.217 -0.935 H5 VK4 44 VK4 H6 H6 H 0 1 N N N -29.478 -9.626 -24.188 3.642 -1.159 0.917 H6 VK4 45 VK4 H7 H7 H 0 1 N N N -28.162 -9.536 -22.969 4.525 0.185 1.681 H7 VK4 46 VK4 H8 H8 H 0 1 N N N -26.515 -11.986 -24.008 7.797 -0.787 1.500 H8 VK4 47 VK4 H9 H9 H 0 1 N N N -24.350 -11.585 -25.979 7.517 -2.281 -0.370 H9 VK4 48 VK4 H10 H10 H 0 1 N N N -25.712 -12.756 -26.017 8.591 -1.298 -1.420 H10 VK4 49 VK4 H11 H11 H 0 1 N N N -24.455 -14.428 -25.108 9.360 -3.065 0.968 H11 VK4 50 VK4 H12 H12 H 0 1 N N N -23.057 -13.433 -25.640 10.090 -3.031 -0.668 H12 VK4 51 VK4 H13 H13 H 0 1 N N N -28.705 -2.244 -22.044 -1.839 -2.090 -0.029 H13 VK4 52 VK4 H14 H14 H 0 1 N N N -23.597 -14.158 -23.013 11.139 -1.641 1.487 H14 VK4 53 VK4 H15 H15 H 0 1 N N N -22.577 -12.767 -23.514 11.334 -1.111 -0.207 H15 VK4 54 VK4 H16 H16 H 0 1 N N N -24.096 -11.416 -22.508 10.064 0.739 0.225 H16 VK4 55 VK4 H17 H17 H 0 1 N N N -25.241 -12.781 -22.274 9.869 0.209 1.920 H17 VK4 56 VK4 H18 H18 H 0 1 N N N -25.486 -6.556 -26.282 7.340 2.582 -1.844 H18 VK4 57 VK4 H19 H19 H 0 1 N N N -24.294 -7.724 -25.618 5.923 3.650 -1.699 H19 VK4 58 VK4 H20 H20 H 0 1 N N N -25.212 -8.126 -27.109 6.803 3.135 -0.240 H20 VK4 59 VK4 H21 H21 H 0 1 N N N -26.911 -0.266 -26.148 -4.902 -0.535 2.316 H21 VK4 60 VK4 H22 H22 H 0 1 N N N -28.623 -0.736 -26.423 -4.953 1.082 1.575 H22 VK4 61 VK4 H23 H23 H 0 1 N N N -27.866 -2.922 -27.364 -5.805 -1.492 0.176 H23 VK4 62 VK4 H24 H24 H 0 1 N N N -26.514 -0.445 -28.596 -7.284 -0.843 2.101 H24 VK4 63 VK4 H25 H25 H 0 1 N N N -28.213 -0.964 -28.866 -7.512 0.751 1.344 H25 VK4 64 VK4 H26 H26 H 0 1 N N N -27.334 -3.152 -29.795 -8.447 -0.342 -0.676 H26 VK4 65 VK4 H27 H27 H 0 1 N N N -25.669 -2.494 -29.653 -8.219 -1.936 0.081 H27 VK4 66 VK4 H28 H28 H 0 1 N N N -24.851 -0.720 -27.492 -6.284 2.228 0.254 H28 VK4 67 VK4 H29 H29 H 0 1 N N N -22.606 -1.478 -26.872 -6.278 3.610 -1.784 H29 VK4 68 VK4 H30 H30 H 0 1 N N N -22.278 -3.755 -25.982 -5.952 2.555 -3.985 H30 VK4 69 VK4 H31 H31 H 0 1 N N N -24.209 -5.245 -25.729 -5.631 0.120 -4.148 H31 VK4 70 VK4 H32 H32 H 0 1 N N N -26.452 -4.476 -26.330 -5.628 -1.261 -2.109 H32 VK4 71 VK4 H33 H33 H 0 1 N N N -29.182 -6.366 -21.006 2.273 -1.191 -0.719 H33 VK4 72 VK4 H34 H34 H 0 1 N N N -28.577 -7.647 -25.319 3.198 0.276 -1.067 H34 VK4 73 VK4 H35 H35 H 0 1 N N N -29.455 -2.576 -25.398 -2.412 0.565 2.214 H35 VK4 74 VK4 H36 H36 H 0 1 N N N -26.235 -0.182 -32.172 -11.694 -1.068 0.866 H36 VK4 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VK4 O33 C31 DOUB N N 1 VK4 O32 C31 SING N N 2 VK4 C31 C30 SING N N 3 VK4 C30 C29 SING N N 4 VK4 C29 C28 SING N N 5 VK4 C28 C34 SING N N 6 VK4 C28 C27 SING N N 7 VK4 C35 C34 DOUB Y N 8 VK4 C35 C36 SING Y N 9 VK4 C34 C39 SING Y N 10 VK4 C36 C37 DOUB Y N 11 VK4 C39 C38 DOUB Y N 12 VK4 C37 C38 SING Y N 13 VK4 C27 C25 SING N N 14 VK4 C22 C11 SING N N 15 VK4 CL7 C6 SING N N 16 VK4 C18 C19 SING N N 17 VK4 C18 C17 SING N N 18 VK4 C11 N12 SING N N 19 VK4 C11 C10 SING N N 20 VK4 C19 C20 SING N N 21 VK4 N12 C13 SING N N 22 VK4 N12 C15 SING N N 23 VK4 C13 C14 SING N N 24 VK4 C25 N24 SING N N 25 VK4 C25 O26 DOUB N N 26 VK4 N24 C1 SING N N 27 VK4 C9 C10 SING N N 28 VK4 C9 C14 SING N N 29 VK4 C9 O8 SING N N 30 VK4 C15 C17 SING N N 31 VK4 C15 O16 DOUB N N 32 VK4 C17 C21 SING N N 33 VK4 C6 C1 DOUB Y N 34 VK4 C6 C5 SING Y N 35 VK4 C1 C2 SING Y N 36 VK4 C20 C21 SING N N 37 VK4 O8 C5 SING N N 38 VK4 C5 C4 DOUB Y N 39 VK4 C2 C3 DOUB Y N 40 VK4 C4 C3 SING Y N 41 VK4 C3 CL2 SING N N 42 VK4 C10 H1 SING N N 43 VK4 C10 H2 SING N N 44 VK4 C11 H3 SING N N 45 VK4 C13 H4 SING N N 46 VK4 C13 H5 SING N N 47 VK4 C14 H6 SING N N 48 VK4 C14 H7 SING N N 49 VK4 C17 H8 SING N N 50 VK4 C18 H9 SING N N 51 VK4 C18 H10 SING N N 52 VK4 C19 H11 SING N N 53 VK4 C19 H12 SING N N 54 VK4 C2 H13 SING N N 55 VK4 C20 H14 SING N N 56 VK4 C20 H15 SING N N 57 VK4 C21 H16 SING N N 58 VK4 C21 H17 SING N N 59 VK4 C22 H18 SING N N 60 VK4 C22 H19 SING N N 61 VK4 C22 H20 SING N N 62 VK4 C27 H21 SING N N 63 VK4 C27 H22 SING N N 64 VK4 C28 H23 SING N N 65 VK4 C29 H24 SING N N 66 VK4 C29 H25 SING N N 67 VK4 C30 H26 SING N N 68 VK4 C30 H27 SING N N 69 VK4 C35 H28 SING N N 70 VK4 C36 H29 SING N N 71 VK4 C37 H30 SING N N 72 VK4 C38 H31 SING N N 73 VK4 C39 H32 SING N N 74 VK4 C4 H33 SING N N 75 VK4 C9 H34 SING N N 76 VK4 N24 H35 SING N N 77 VK4 O32 H36 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VK4 SMILES ACDLabs 12.01 "c1(cc(Cl)cc(c1Cl)OC2CC(N(CC2)C(C3CCCC3)=O)C)NC(=O)CC(c4ccccc4)CCC(O)=O" VK4 InChI InChI 1.03 "InChI=1S/C30H36Cl2N2O5/c1-19-15-24(13-14-34(19)30(38)21-9-5-6-10-21)39-26-18-23(31)17-25(29(26)32)33-27(35)16-22(11-12-28(36)37)20-7-3-2-4-8-20/h2-4,7-8,17-19,21-22,24H,5-6,9-16H2,1H3,(H,33,35)(H,36,37)/t19-,22-,24-/m1/s1" VK4 InChIKey InChI 1.03 NWXXXIQTJWEGQR-ZFJSRUIDSA-N VK4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1C[C@@H](CCN1C(=O)C2CCCC2)Oc3cc(Cl)cc(NC(=O)C[C@@H](CCC(O)=O)c4ccccc4)c3Cl" VK4 SMILES CACTVS 3.385 "C[CH]1C[CH](CCN1C(=O)C2CCCC2)Oc3cc(Cl)cc(NC(=O)C[CH](CCC(O)=O)c4ccccc4)c3Cl" VK4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@@H](CCN1C(=O)C2CCCC2)Oc3cc(cc(c3Cl)NC(=O)C[C@@H](CCC(=O)O)c4ccccc4)Cl" VK4 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(CCN1C(=O)C2CCCC2)Oc3cc(cc(c3Cl)NC(=O)CC(CCC(=O)O)c4ccccc4)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VK4 "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid" VK4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{R})-6-[[2,5-bis(chloranyl)-3-[(2~{R},4~{R})-1-cyclopentylcarbonyl-2-methyl-piperidin-4-yl]oxy-phenyl]amino]-6-oxidanylidene-4-phenyl-hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VK4 "Create component" 2020-08-19 RCSB VK4 "Initial release" 2021-02-03 RCSB ##