data_VK5 # _chem_comp.id VK5 _chem_comp.name "~{N}-[[3-[4-[(dimethylamino)methyl]phenyl]imidazo[1,2-a]pyridin-6-yl]methyl]-~{N}-methyl-5-[3-methyl-5-(1,3,5-trimethylpyrazol-4-yl)pyridin-2-yl]-1,3,4-oxadiazol-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H35 N9 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-20 _chem_comp.pdbx_modified_date 2021-09-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.680 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VK5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OLX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VK5 C1 C1 C 0 1 N N N 32.814 17.256 13.683 -1.610 6.758 -0.792 C1 VK5 1 VK5 C2 C2 C 0 1 N N N 30.772 16.274 12.821 -3.492 5.234 -0.763 C2 VK5 2 VK5 C3 C3 C 0 1 Y N N 29.538 16.580 13.635 -3.951 3.894 -0.250 C3 VK5 3 VK5 N6 N1 N 0 1 Y N N 25.374 6.359 27.962 8.560 -0.132 0.734 N6 VK5 4 VK5 C7 C4 C 0 1 Y N N 27.961 18.162 14.557 -4.810 2.546 1.534 C7 VK5 5 VK5 C8 C5 C 0 1 Y N N 29.094 17.885 13.809 -4.389 3.770 1.057 C8 VK5 6 VK5 C9 C6 C 0 1 Y N N 26.025 17.400 15.959 -5.239 0.115 1.199 C9 VK5 7 VK5 C10 C7 C 0 1 Y N N 24.848 18.017 15.620 -6.066 -0.112 2.262 C10 VK5 8 VK5 C11 C8 C 0 1 Y N N 24.598 17.471 17.681 -5.540 -2.056 1.454 C11 VK5 9 VK5 C12 C9 C 0 1 Y N N 24.188 17.224 19.017 -5.378 -3.423 1.157 C12 VK5 10 VK5 C13 C10 C 0 1 Y N N 25.039 16.587 19.863 -4.591 -3.790 0.109 C13 VK5 11 VK5 C14 C11 C 0 1 Y N N 26.352 16.154 19.436 -3.953 -2.803 -0.660 C14 VK5 12 VK5 C15 C12 C 0 1 N N N 27.328 15.444 20.340 -3.081 -3.204 -1.822 C15 VK5 13 VK5 C16 C13 C 0 1 N N N 26.782 13.082 19.772 -1.385 -4.866 -0.926 C16 VK5 14 VK5 C19 C14 C 0 1 Y N N 25.468 11.727 24.556 2.439 -1.055 -0.599 C19 VK5 15 VK5 C20 C15 C 0 1 Y N N 25.809 9.462 24.890 4.401 0.029 -1.158 C20 VK5 16 VK5 C21 C16 C 0 1 Y N N 25.020 9.444 26.033 5.004 -0.374 0.032 C21 VK5 17 VK5 C22 C17 C 0 1 Y N N 24.438 10.641 26.435 4.275 -1.153 0.937 C22 VK5 18 VK5 C24 C18 C 0 1 N N N 23.987 13.081 26.196 2.151 -2.333 1.555 C24 VK5 19 VK5 C27 C19 C 0 1 N N N 27.327 7.566 27.146 7.467 -2.351 0.313 C27 VK5 20 VK5 C30 C20 C 0 1 N N N 22.213 7.975 27.039 6.029 2.548 0.506 C30 VK5 21 VK5 C31 C21 C 0 1 Y N N 26.724 16.397 18.164 -4.118 -1.496 -0.363 C31 VK5 22 VK5 C29 C22 C 0 1 Y N N 23.637 7.587 27.241 6.857 1.289 0.544 C29 VK5 23 VK5 N7 N2 N 0 1 Y N N 24.027 6.495 27.916 8.180 1.214 0.789 N7 VK5 24 VK5 C28 C23 C 0 1 N N N 23.195 5.496 28.569 9.068 2.346 1.068 C28 VK5 25 VK5 C26 C24 C 0 1 Y N N 25.852 7.392 27.298 7.503 -0.851 0.463 C26 VK5 26 VK5 C25 C25 C 0 1 Y N N 24.789 8.207 26.817 6.403 0.019 0.336 C25 VK5 27 VK5 N5 N3 N 0 1 Y N N 26.034 10.569 24.164 3.162 -0.316 -1.435 N5 VK5 28 VK5 C23 C26 C 0 1 Y N N 24.641 11.812 25.717 2.977 -1.495 0.613 C23 VK5 29 VK5 C18 C27 C 0 1 Y N N 25.763 12.896 23.708 1.051 -1.410 -0.953 C18 VK5 30 VK5 O O1 O 0 1 Y N N 26.166 12.714 22.410 0.487 -2.634 -0.851 O VK5 31 VK5 N3 N4 N 0 1 Y N N 25.692 14.143 24.035 0.136 -0.595 -1.418 N3 VK5 32 VK5 N4 N5 N 0 1 Y N N 26.065 14.868 22.906 -0.957 -1.245 -1.613 N4 VK5 33 VK5 C17 C28 C 0 1 Y N N 26.332 13.988 21.986 -0.784 -2.502 -1.273 C17 VK5 34 VK5 N2 N6 N 0 1 N N N 26.729 14.174 20.734 -1.731 -3.503 -1.339 N2 VK5 35 VK5 N8 N7 N 0 1 Y N N 25.866 17.044 17.296 -4.904 -1.117 0.685 N8 VK5 36 VK5 N1 N8 N 0 1 Y N N 23.968 18.065 16.668 -6.232 -1.425 2.395 N1 VK5 37 VK5 C6 C29 C 0 1 Y N N 27.237 17.131 15.155 -4.794 1.430 0.694 C6 VK5 38 VK5 C5 C30 C 0 1 Y N N 27.683 15.823 14.980 -4.357 1.564 -0.626 C5 VK5 39 VK5 C4 C31 C 0 1 Y N N 28.816 15.557 14.231 -3.938 2.794 -1.089 C4 VK5 40 VK5 N N9 N 0 1 N N N 31.971 16.057 13.645 -2.050 5.382 -0.524 N VK5 41 VK5 C C32 C 0 1 N N N 32.749 14.911 13.170 -1.282 4.419 -1.325 C VK5 42 VK5 H1 H1 H 0 1 N N N 33.700 17.062 14.305 -2.146 7.444 -0.135 H1 VK5 43 VK5 H2 H2 H 0 1 N N N 33.132 17.513 12.662 -0.539 6.840 -0.607 H2 VK5 44 VK5 H3 H3 H 0 1 N N N 32.242 18.093 14.110 -1.821 7.011 -1.831 H3 VK5 45 VK5 H4 H4 H 0 1 N N N 30.585 15.365 12.230 -3.692 5.301 -1.832 H4 VK5 46 VK5 H5 H5 H 0 1 N N N 30.962 17.119 12.143 -4.029 6.026 -0.242 H5 VK5 47 VK5 H6 H6 H 0 1 N N N 27.636 19.185 14.678 -5.146 2.449 2.556 H6 VK5 48 VK5 H7 H7 H 0 1 N N N 29.641 18.697 13.354 -4.400 4.633 1.706 H7 VK5 49 VK5 H8 H8 H 0 1 N N N 24.639 18.419 14.639 -6.511 0.647 2.889 H8 VK5 50 VK5 H9 H9 H 0 1 N N N 23.212 17.538 19.357 -5.873 -4.174 1.755 H9 VK5 51 VK5 H10 H10 H 0 1 N N N 24.728 16.399 20.880 -4.457 -4.834 -0.131 H10 VK5 52 VK5 H11 H11 H 0 1 N N N 28.271 15.262 19.803 -3.499 -4.089 -2.302 H11 VK5 53 VK5 H12 H12 H 0 1 N N N 27.526 16.057 21.232 -3.036 -2.387 -2.542 H12 VK5 54 VK5 H13 H13 H 0 1 N N N 26.296 12.192 20.199 -1.004 -5.420 -1.784 H13 VK5 55 VK5 H14 H14 H 0 1 N N N 26.258 13.379 18.851 -0.622 -4.828 -0.150 H14 VK5 56 VK5 H15 H15 H 0 1 N N N 27.832 12.850 19.538 -2.274 -5.364 -0.538 H15 VK5 57 VK5 H16 H16 H 0 1 N N N 26.265 8.537 24.568 4.957 0.631 -1.862 H16 VK5 58 VK5 H17 H17 H 0 1 N N N 23.818 10.660 27.319 4.717 -1.480 1.867 H17 VK5 59 VK5 H18 H18 H 0 1 N N N 22.994 13.179 25.734 2.214 -3.381 1.260 H18 VK5 60 VK5 H19 H19 H 0 1 N N N 23.880 13.048 27.290 2.530 -2.218 2.570 H19 VK5 61 VK5 H20 H20 H 0 1 N N N 24.609 13.943 25.914 1.112 -2.006 1.515 H20 VK5 62 VK5 H21 H21 H 0 1 N N N 27.848 6.740 27.651 7.267 -2.808 1.282 H21 VK5 63 VK5 H22 H22 H 0 1 N N N 27.588 7.565 26.077 6.680 -2.627 -0.388 H22 VK5 64 VK5 H23 H23 H 0 1 N N N 27.632 8.522 27.597 8.428 -2.701 -0.062 H23 VK5 65 VK5 H24 H24 H 0 1 N N N 21.836 7.519 26.112 6.021 2.947 -0.508 H24 VK5 66 VK5 H25 H25 H 0 1 N N N 21.613 7.623 27.891 5.008 2.321 0.815 H25 VK5 67 VK5 H26 H26 H 0 1 N N N 22.138 9.070 26.965 6.458 3.286 1.184 H26 VK5 68 VK5 H27 H27 H 0 1 N N N 27.699 16.084 17.821 -3.622 -0.745 -0.960 H27 VK5 69 VK5 H28 H28 H 0 1 N N N 23.835 4.731 29.032 9.096 2.530 2.142 H28 VK5 70 VK5 H29 H29 H 0 1 N N N 22.582 5.979 29.344 10.072 2.116 0.712 H29 VK5 71 VK5 H30 H30 H 0 1 N N N 22.538 5.023 27.825 8.696 3.234 0.556 H30 VK5 72 VK5 H31 H31 H 0 1 N N N 27.139 15.008 15.434 -4.343 0.705 -1.281 H31 VK5 73 VK5 H32 H32 H 0 1 N N N 29.143 14.535 14.109 -3.600 2.898 -2.109 H32 VK5 74 VK5 H34 H34 H 0 1 N N N 33.635 14.779 13.808 -1.480 4.588 -2.384 H34 VK5 75 VK5 H35 H35 H 0 1 N N N 32.129 14.004 13.213 -0.218 4.550 -1.130 H35 VK5 76 VK5 H36 H36 H 0 1 N N N 33.067 15.089 12.132 -1.579 3.405 -1.057 H36 VK5 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VK5 C2 C3 SING N N 1 VK5 C2 N SING N N 2 VK5 C N SING N N 3 VK5 C3 C8 DOUB Y N 4 VK5 C3 C4 SING Y N 5 VK5 N C1 SING N N 6 VK5 C8 C7 SING Y N 7 VK5 C4 C5 DOUB Y N 8 VK5 C7 C6 DOUB Y N 9 VK5 C5 C6 SING Y N 10 VK5 C6 C9 SING N N 11 VK5 C10 C9 DOUB Y N 12 VK5 C10 N1 SING Y N 13 VK5 C9 N8 SING Y N 14 VK5 N1 C11 DOUB Y N 15 VK5 N8 C11 SING Y N 16 VK5 N8 C31 SING Y N 17 VK5 C11 C12 SING Y N 18 VK5 C31 C14 DOUB Y N 19 VK5 C12 C13 DOUB Y N 20 VK5 C14 C13 SING Y N 21 VK5 C14 C15 SING N N 22 VK5 C16 N2 SING N N 23 VK5 C15 N2 SING N N 24 VK5 N2 C17 SING N N 25 VK5 C17 O SING Y N 26 VK5 C17 N4 DOUB Y N 27 VK5 O C18 SING Y N 28 VK5 N4 N3 SING Y N 29 VK5 C18 N3 DOUB Y N 30 VK5 C18 C19 SING N N 31 VK5 N5 C19 DOUB Y N 32 VK5 N5 C20 SING Y N 33 VK5 C19 C23 SING Y N 34 VK5 C20 C21 DOUB Y N 35 VK5 C23 C24 SING N N 36 VK5 C23 C22 DOUB Y N 37 VK5 C21 C22 SING Y N 38 VK5 C21 C25 SING N N 39 VK5 C25 C29 DOUB Y N 40 VK5 C25 C26 SING Y N 41 VK5 C30 C29 SING N N 42 VK5 C27 C26 SING N N 43 VK5 C29 N7 SING Y N 44 VK5 C26 N6 DOUB Y N 45 VK5 N7 N6 SING Y N 46 VK5 N7 C28 SING N N 47 VK5 C1 H1 SING N N 48 VK5 C1 H2 SING N N 49 VK5 C1 H3 SING N N 50 VK5 C2 H4 SING N N 51 VK5 C2 H5 SING N N 52 VK5 C7 H6 SING N N 53 VK5 C8 H7 SING N N 54 VK5 C10 H8 SING N N 55 VK5 C12 H9 SING N N 56 VK5 C13 H10 SING N N 57 VK5 C15 H11 SING N N 58 VK5 C15 H12 SING N N 59 VK5 C16 H13 SING N N 60 VK5 C16 H14 SING N N 61 VK5 C16 H15 SING N N 62 VK5 C20 H16 SING N N 63 VK5 C22 H17 SING N N 64 VK5 C24 H18 SING N N 65 VK5 C24 H19 SING N N 66 VK5 C24 H20 SING N N 67 VK5 C27 H21 SING N N 68 VK5 C27 H22 SING N N 69 VK5 C27 H23 SING N N 70 VK5 C30 H24 SING N N 71 VK5 C30 H25 SING N N 72 VK5 C30 H26 SING N N 73 VK5 C31 H27 SING N N 74 VK5 C28 H28 SING N N 75 VK5 C28 H29 SING N N 76 VK5 C28 H30 SING N N 77 VK5 C5 H31 SING N N 78 VK5 C4 H32 SING N N 79 VK5 C H34 SING N N 80 VK5 C H35 SING N N 81 VK5 C H36 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VK5 InChI InChI 1.03 "InChI=1S/C32H35N9O/c1-20-14-26(29-21(2)37-40(7)22(29)3)15-34-30(20)31-35-36-32(42-31)39(6)18-24-10-13-28-33-16-27(41(28)19-24)25-11-8-23(9-12-25)17-38(4)5/h8-16,19H,17-18H2,1-7H3" VK5 InChIKey InChI 1.03 CZIXXCVLEHVEBZ-UHFFFAOYSA-N VK5 SMILES_CANONICAL CACTVS 3.385 "CN(C)Cc1ccc(cc1)c2cnc3ccc(CN(C)c4oc(nn4)c5ncc(cc5C)c6c(C)nn(C)c6C)cn23" VK5 SMILES CACTVS 3.385 "CN(C)Cc1ccc(cc1)c2cnc3ccc(CN(C)c4oc(nn4)c5ncc(cc5C)c6c(C)nn(C)c6C)cn23" VK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cnc1c2nnc(o2)N(C)Cc3ccc4ncc(n4c3)c5ccc(cc5)CN(C)C)c6c(nn(c6C)C)C" VK5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cnc1c2nnc(o2)N(C)Cc3ccc4ncc(n4c3)c5ccc(cc5)CN(C)C)c6c(nn(c6C)C)C" # _pdbx_chem_comp_identifier.comp_id VK5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[3-[4-[(dimethylamino)methyl]phenyl]imidazo[1,2-a]pyridin-6-yl]methyl]-~{N}-methyl-5-[3-methyl-5-(1,3,5-trimethylpyrazol-4-yl)pyridin-2-yl]-1,3,4-oxadiazol-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VK5 "Create component" 2021-05-20 PDBE VK5 "Initial release" 2021-09-15 RCSB ##