data_VK6
#
_chem_comp.id VK6
_chem_comp.name "2-[(2~{Z})-3-oxidanyl-2-[(3~{R})-1-(phenylsulfonyl)pyrrolidin-3-yl]carbonylimino-1,3-thiazol-4-yl]ethanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H17 N3 O6 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-07-27
_chem_comp.pdbx_modified_date 2023-12-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 411.453
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VK6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8K73
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VK6 C13 C1 C 0 1 N N N N N N 26.753 -25.095 5.348 2.397 -2.042 -1.183 C13 VK6 1
VK6 C17 C2 C 0 1 Y N N N N N 29.600 -22.165 5.809 3.321 1.791 1.304 C17 VK6 2
VK6 C20 C3 C 0 1 Y N N N N N 30.306 -21.376 3.251 2.599 3.123 -1.008 C20 VK6 3
VK6 C21 C4 C 0 1 Y N N N N N 30.160 -22.727 3.542 3.192 1.877 -1.085 C21 VK6 4
VK6 C24 C5 C 0 1 N N N N N N 27.784 -25.446 3.205 2.528 -2.127 1.204 C24 VK6 5
VK6 C02 C6 C 0 1 N N N N N N 17.864 -25.057 7.763 -6.339 0.313 -0.187 C02 VK6 6
VK6 C03 C7 C 0 1 N N N N N N 19.123 -25.922 7.695 -5.423 0.626 0.968 C03 VK6 7
VK6 C04 C8 C 0 1 N N N N N N 20.211 -25.332 6.792 -3.991 0.565 0.504 C04 VK6 8
VK6 C07 C9 C 0 1 N N N N N N 20.022 -24.354 5.757 -3.338 1.653 0.116 C07 VK6 9
VK6 C09 C10 C 0 1 N N N N N N 22.454 -24.960 5.849 -2.023 -0.558 0.037 C09 VK6 10
VK6 C11 C11 C 0 1 N N N N N N 24.430 -24.242 4.577 0.062 -1.368 -0.521 C11 VK6 11
VK6 C12 C12 C 0 1 N N R N N N 25.982 -24.316 4.324 1.023 -2.522 -0.650 C12 VK6 12
VK6 C16 C13 C 0 1 Y N N N N N 29.807 -23.121 4.827 3.553 1.210 0.071 C16 VK6 13
VK6 C18 C14 C 0 1 Y N N N N N 29.747 -20.823 5.514 2.728 3.037 1.381 C18 VK6 14
VK6 C19 C15 C 0 1 Y N N N N N 30.100 -20.426 4.237 2.368 3.703 0.225 C19 VK6 15
VK6 C25 C16 C 0 1 N N N N N N 26.358 -24.893 2.997 1.409 -3.084 0.743 C25 VK6 16
VK6 N05 N1 N 0 1 N N N N N N 21.732 -25.705 6.839 -3.304 -0.608 0.469 N05 VK6 17
VK6 N10 N2 N 0 1 N N N N N N 23.709 -25.013 5.610 -1.171 -1.579 -0.078 N10 VK6 18
VK6 N14 N3 N 0 1 N N N N N N 28.061 -25.384 4.703 3.092 -1.502 -0.001 N14 VK6 19
VK6 O01 O1 O 0 1 N N N N N N 17.676 -24.301 8.754 -5.876 0.065 -1.275 O01 VK6 20
VK6 O06 O2 O 0 1 N N N N N N 22.251 -26.639 7.747 -3.902 -1.827 0.868 O06 VK6 21
VK6 O22 O3 O 0 1 N N N N N N 29.724 -25.072 6.669 4.904 -0.461 -1.314 O22 VK6 22
VK6 O23 O4 O 0 1 N N N N N N 30.658 -25.663 4.550 5.039 -0.550 1.180 O23 VK6 23
VK6 O26 O5 O 0 1 N N N N N N 23.852 -23.476 3.882 0.416 -0.244 -0.822 O26 VK6 24
VK6 O27 O6 O 0 1 N N N N N N 17.006 -25.112 6.842 -7.669 0.310 -0.007 O27 VK6 25
VK6 S08 S1 S 0 1 N N N N N N 21.385 -24.086 5.140 -1.717 1.097 -0.333 S08 VK6 26
VK6 S15 S2 S 0 1 N N N N N N 29.611 -24.883 5.222 4.308 -0.378 -0.027 S15 VK6 27
VK6 H1 H1 H 0 1 N N N N N N 26.895 -24.499 6.261 2.954 -2.880 -1.602 H1 VK6 28
VK6 H2 H2 H 0 1 N N N N N N 26.230 -26.030 5.598 2.262 -1.263 -1.933 H2 VK6 29
VK6 H3 H3 H 0 1 N N N N N N 29.323 -22.470 6.807 3.599 1.268 2.208 H3 VK6 30
VK6 H4 H4 H 0 1 N N N N N N 30.581 -21.066 2.253 2.317 3.644 -1.911 H4 VK6 31
VK6 H5 H5 H 0 1 N N N N N N 30.320 -23.468 2.773 3.373 1.423 -2.048 H5 VK6 32
VK6 H6 H6 H 0 1 N N N N N N 27.843 -26.486 2.851 2.115 -1.361 1.860 H6 VK6 33
VK6 H7 H7 H 0 1 N N N N N N 28.513 -24.830 2.658 3.303 -2.688 1.728 H7 VK6 34
VK6 H8 H8 H 0 1 N N N N N N 19.531 -26.027 8.711 -5.641 1.626 1.343 H8 VK6 35
VK6 H9 H9 H 0 1 N N N N N N 18.846 -26.913 7.307 -5.579 -0.102 1.763 H9 VK6 36
VK6 H10 H10 H 0 1 N N N N N N 19.087 -23.895 5.471 -3.716 2.664 0.079 H10 VK6 37
VK6 H12 H12 H 0 1 N N N N N N 26.353 -23.281 4.351 0.609 -3.303 -1.287 H12 VK6 38
VK6 H13 H13 H 0 1 N N N N N N 29.586 -20.082 6.283 2.547 3.490 2.344 H13 VK6 39
VK6 H14 H14 H 0 1 N N N N N N 30.215 -19.377 4.009 1.905 4.677 0.285 H14 VK6 40
VK6 H15 H15 H 0 1 N N N N N N 26.352 -24.115 2.219 1.784 -4.104 0.658 H15 VK6 41
VK6 H16 H16 H 0 1 N N N N N N 25.666 -25.700 2.714 0.559 -3.040 1.425 H16 VK6 42
VK6 H17 H17 H 0 1 N N N N N N 23.188 -26.723 7.615 -3.316 -2.594 0.799 H17 VK6 43
VK6 H18 H18 H 0 1 N N N N N N 16.284 -24.528 7.046 -8.216 0.103 -0.777 H18 VK6 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VK6 C13 C12 SING N N 1
VK6 C13 N14 SING N N 2
VK6 C17 C16 DOUB Y N 3
VK6 C17 C18 SING Y N 4
VK6 C20 C21 DOUB Y N 5
VK6 C20 C19 SING Y N 6
VK6 C21 C16 SING Y N 7
VK6 C24 C25 SING N N 8
VK6 C24 N14 SING N N 9
VK6 C02 C03 SING N N 10
VK6 C02 O01 DOUB N N 11
VK6 C02 O27 SING N N 12
VK6 C03 C04 SING N N 13
VK6 C04 C07 DOUB N N 14
VK6 C04 N05 SING N N 15
VK6 C07 S08 SING N N 16
VK6 C09 N05 SING N N 17
VK6 C09 N10 DOUB N N 18
VK6 C09 S08 SING N N 19
VK6 C11 C12 SING N N 20
VK6 C11 N10 SING N N 21
VK6 C11 O26 DOUB N N 22
VK6 C12 C25 SING N N 23
VK6 C16 S15 SING N N 24
VK6 C18 C19 DOUB Y N 25
VK6 N05 O06 SING N N 26
VK6 N14 S15 SING N N 27
VK6 O22 S15 DOUB N N 28
VK6 O23 S15 DOUB N N 29
VK6 C13 H1 SING N N 30
VK6 C13 H2 SING N N 31
VK6 C17 H3 SING N N 32
VK6 C20 H4 SING N N 33
VK6 C21 H5 SING N N 34
VK6 C24 H6 SING N N 35
VK6 C24 H7 SING N N 36
VK6 C03 H8 SING N N 37
VK6 C03 H9 SING N N 38
VK6 C07 H10 SING N N 39
VK6 C12 H12 SING N N 40
VK6 C18 H13 SING N N 41
VK6 C19 H14 SING N N 42
VK6 C25 H15 SING N N 43
VK6 C25 H16 SING N N 44
VK6 O06 H17 SING N N 45
VK6 O27 H18 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VK6 InChI InChI 1.06 "InChI=1S/C16H17N3O6S2/c20-14(21)8-12-10-26-16(19(12)23)17-15(22)11-6-7-18(9-11)27(24,25)13-4-2-1-3-5-13/h1-5,10-11,23H,6-9H2,(H,20,21)/b17-16-/t11-/m1/s1"
VK6 InChIKey InChI 1.06 SIHOQGBZZIZREU-RRGFCBMYSA-N
VK6 SMILES_CANONICAL CACTVS 3.385 "ON1C(=CSC1=NC(=O)[C@@H]2CCN(C2)[S](=O)(=O)c3ccccc3)CC(O)=O"
VK6 SMILES CACTVS 3.385 "ON1C(=CSC1=NC(=O)[CH]2CCN(C2)[S](=O)(=O)c3ccccc3)CC(O)=O"
VK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)N2CC[C@H](C2)C(=O)/N=C\3/N(C(=CS3)CC(=O)O)O"
VK6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)N2CCC(C2)C(=O)N=C3N(C(=CS3)CC(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id VK6
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[(2~{Z})-3-oxidanyl-2-[(3~{R})-1-(phenylsulfonyl)pyrrolidin-3-yl]carbonylimino-1,3-thiazol-4-yl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VK6 "Create component" 2023-07-27 PDBJ
VK6 "Initial release" 2023-12-13 RCSB
#