data_VKA # _chem_comp.id VKA _chem_comp.name "3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C64 H84 F3 N11 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Protac MS33" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-20 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1208.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JTD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKA C1 C1 C 0 1 Y N N -5.998 -11.428 14.843 -22.194 -4.031 -1.906 C1 VKA 1 VKA C2 C2 C 0 1 Y N N -6.372 -12.456 15.704 -22.847 -4.078 -3.087 C2 VKA 2 VKA C4 C3 C 0 1 Y N N -4.221 -13.094 15.418 -23.837 -5.846 -2.167 C4 VKA 3 VKA C6 C4 C 0 1 Y N N -6.845 -10.253 14.332 -21.172 -3.037 -1.515 C6 VKA 4 VKA C7 C5 C 0 1 Y N N -6.722 -9.800 13.040 -21.241 -2.414 -0.268 C7 VKA 5 VKA C9 C6 C 0 1 Y N N -8.508 -8.578 14.824 -19.182 -1.790 -2.019 C9 VKA 6 VKA C10 C7 C 0 1 Y N N -7.517 -8.719 12.630 -20.284 -1.487 0.091 C10 VKA 7 VKA C11 C8 C 0 1 Y N N -8.405 -8.117 13.517 -19.257 -1.175 -0.782 C11 VKA 8 VKA C12 C9 C 0 1 N N N -9.279 -6.920 13.036 -18.215 -0.162 -0.383 C12 VKA 9 VKA C14 C10 C 0 1 N N N -7.845 -5.585 11.523 -16.053 -0.131 0.741 C14 VKA 10 VKA C16 C11 C 0 1 N N S -7.292 -5.291 10.105 -14.914 -0.830 1.436 C16 VKA 11 VKA C C12 C 0 1 Y N N -7.733 -9.633 15.232 -20.130 -2.722 -2.389 C VKA 12 VKA S3 S1 S 0 1 Y N N -4.364 -11.707 14.484 -22.782 -5.362 -0.912 S3 VKA 13 VKA N5 N1 N 0 1 Y N N -5.391 -13.351 15.987 -23.711 -5.064 -3.187 N5 VKA 14 VKA N13 N2 N 0 1 N N N -8.779 -6.633 11.718 -17.107 -0.842 0.293 N13 VKA 15 VKA O15 O1 O 0 1 N N N -7.470 -4.932 12.459 -16.023 1.071 0.585 O15 VKA 16 VKA N17 N3 N 0 1 N N N -7.105 -3.708 9.845 -13.895 0.152 1.836 N17 VKA 17 VKA C18 C13 C 0 1 N N N -5.894 -3.474 9.418 -13.767 0.129 3.305 C18 VKA 18 VKA C19 C14 C 0 1 N N R -5.363 -4.878 9.060 -14.260 -1.279 3.724 C19 VKA 19 VKA C20 C15 C 0 1 N N N -6.120 -5.802 10.014 -15.424 -1.515 2.721 C20 VKA 20 VKA C21 C16 C 0 1 N N N -8.200 -2.736 10.065 -13.193 0.941 0.999 C21 VKA 21 VKA O22 O2 O 0 1 N N N -5.698 -5.168 7.767 -13.231 -2.255 3.550 O22 VKA 22 VKA O23 O3 O 0 1 N N N -9.229 -3.148 10.452 -13.445 0.942 -0.187 O23 VKA 23 VKA C24 C17 C 0 1 N N S -7.974 -1.244 9.802 -12.096 1.823 1.537 C24 VKA 24 VKA C25 C18 C 0 1 N N N -7.758 -0.516 11.185 -12.660 3.213 1.839 C25 VKA 25 VKA N26 N4 N 0 1 N N N -9.156 -0.716 9.215 -11.027 1.935 0.541 N26 VKA 26 VKA C27 C19 C 0 1 N N N -9.053 -0.557 12.000 -13.104 3.877 0.535 C27 VKA 27 VKA C28 C20 C 0 1 N N N -6.640 -1.230 11.962 -13.860 3.083 2.779 C28 VKA 28 VKA C29 C21 C 0 1 N N N -7.365 0.929 10.938 -11.580 4.068 2.506 C29 VKA 29 VKA C30 C22 C 0 1 N N N -9.192 -0.378 7.749 -9.769 2.219 0.932 C30 VKA 30 VKA C31 C23 C 0 1 N N N -10.489 0.192 7.148 -8.670 2.335 -0.092 C31 VKA 31 VKA C32 C24 C 0 1 N N N -11.239 1.194 8.149 -7.350 2.662 0.610 C32 VKA 32 VKA O32 O4 O 0 1 N N N -8.222 -0.550 7.058 -9.521 2.382 2.108 O32 VKA 33 VKA C33 C25 C 0 1 N N N -10.235 2.052 8.996 -6.234 2.779 -0.430 C33 VKA 34 VKA C34 C26 C 0 1 N N N -10.660 3.564 9.079 -4.915 3.105 0.273 C34 VKA 35 VKA C35 C27 C 0 1 N N N -9.584 4.503 8.499 -3.799 3.223 -0.767 C35 VKA 36 VKA C36 C28 C 0 1 N N N -8.910 5.416 9.614 -2.479 3.549 -0.065 C36 VKA 37 VKA C37 C29 C 0 1 N N N -8.352 6.712 9.044 -1.363 3.667 -1.105 C37 VKA 38 VKA C38 C30 C 0 1 N N N -7.042 7.145 9.736 -0.044 3.993 -0.403 C38 VKA 39 VKA C39 C31 C 0 1 N N N -7.296 7.913 11.041 1.072 4.111 -1.443 C39 VKA 40 VKA C40 C32 C 0 1 N N N -6.296 7.499 12.185 2.372 4.432 -0.751 C40 VKA 41 VKA N41 N5 N 0 1 N N N -6.792 7.295 13.561 3.500 4.583 -1.472 N41 VKA 42 VKA O42 O5 O 0 1 N N N -5.158 7.353 11.945 2.402 4.555 0.455 O42 VKA 43 VKA C43 C33 C 0 1 N N N -5.845 6.903 14.645 4.763 4.896 -0.800 C43 VKA 44 VKA C44 C34 C 0 1 N N N -6.322 7.446 16.018 5.879 5.013 -1.840 C44 VKA 45 VKA N45 N6 N 0 1 N N N -7.548 7.113 16.254 7.146 5.327 -1.165 N45 VKA 46 VKA C47 C35 C 0 1 N N N -7.932 7.600 17.471 8.188 5.680 -2.140 C47 VKA 47 VKA C48 C36 C 0 1 N N N -9.281 7.061 17.938 9.466 6.076 -1.395 C48 VKA 48 VKA N49 N7 N 0 1 N N N -9.297 5.695 17.880 9.900 4.958 -0.546 N49 VKA 49 VKA C50 C37 C 0 1 N N N -9.054 5.246 16.626 8.858 4.605 0.429 C50 VKA 50 VKA C51 C38 C 0 1 N N N -7.697 5.755 16.134 7.581 4.209 -0.316 C51 VKA 51 VKA C52 C39 C 0 1 N N N -10.342 5.182 18.421 11.167 5.272 0.129 C52 VKA 52 VKA C53 C40 C 0 1 Y N N -11.701 5.641 17.731 11.705 4.029 0.790 C53 VKA 53 VKA C54 C41 C 0 1 Y N N -12.419 6.738 18.217 12.550 3.189 0.093 C54 VKA 54 VKA C55 C42 C 0 1 Y N N -13.628 7.136 17.595 13.047 2.040 0.705 C55 VKA 55 VKA C56 C43 C 0 1 Y N N -14.122 6.424 16.471 12.688 1.746 2.019 C56 VKA 56 VKA C57 C44 C 0 1 Y N N -13.402 5.318 15.978 11.842 2.592 2.706 C57 VKA 57 VKA C58 C45 C 0 1 Y N N -12.202 4.921 16.595 11.356 3.735 2.095 C58 VKA 58 VKA C59 C46 C 0 1 Y N N -14.370 8.352 18.175 13.956 1.133 -0.039 C59 VKA 59 VKA C60 C47 C 0 1 Y N N -14.148 8.636 19.511 14.451 -0.015 0.575 C60 VKA 60 VKA C61 C48 C 0 1 Y N N -14.768 9.730 20.081 15.299 -0.859 -0.122 C61 VKA 61 VKA C62 C49 C 0 1 Y N N -15.656 10.524 19.322 15.654 -0.558 -1.438 C62 VKA 62 VKA C63 C50 C 0 1 Y N N -15.859 10.256 17.973 15.159 0.587 -2.046 C63 VKA 63 VKA C64 C51 C 0 1 Y N N -15.215 9.151 17.392 14.309 1.426 -1.355 C64 VKA 64 VKA N65 N8 N 0 1 N N N -16.270 11.687 19.985 16.510 -1.409 -2.142 N65 VKA 65 VKA C66 C52 C 0 1 N N N -17.384 12.347 19.295 17.767 -0.729 -2.483 C66 VKA 66 VKA C67 C53 C 0 1 N N N -17.999 13.473 20.104 18.705 -1.716 -3.182 C67 VKA 67 VKA N68 N9 N 0 1 N N N -17.042 14.409 20.492 18.050 -2.240 -4.388 N68 VKA 68 VKA C69 C54 C 0 1 N N N -16.037 13.854 21.207 16.792 -2.920 -4.048 C69 VKA 69 VKA C70 C55 C 0 1 N N N -15.346 12.726 20.424 15.854 -1.933 -3.349 C70 VKA 70 VKA C71 C56 C 0 1 N N N -17.605 15.310 21.232 18.949 -3.135 -5.129 C71 VKA 71 VKA N72 N10 N 0 1 N N N -14.485 9.916 21.489 15.799 -2.014 0.493 N72 VKA 72 VKA C73 C57 C 0 1 N N N -13.174 10.291 21.994 15.088 -2.624 1.462 C73 VKA 73 VKA C74 C58 C 0 1 N N N -13.106 10.323 23.558 15.670 -3.767 2.197 C74 VKA 74 VKA C75 C59 C 0 1 N N N -13.738 9.221 24.192 16.169 -3.580 3.557 C75 VKA 75 VKA N76 N11 N 0 1 N N N -13.753 9.095 25.522 16.694 -4.540 4.266 N76 VKA 76 VKA C77 C60 C 0 1 N N N -13.173 10.008 26.288 16.824 -5.792 3.810 C77 VKA 77 VKA C78 C61 C 0 1 N N N -12.531 11.134 25.737 16.344 -6.119 2.413 C78 VKA 78 VKA C79 C62 C 0 1 N N N -12.484 11.296 24.310 15.733 -4.989 1.608 C79 VKA 79 VKA C80 C63 C 0 1 N N N -11.793 12.500 23.657 15.220 -5.212 0.208 C80 VKA 80 VKA O85 O6 O 0 1 N N N -12.230 10.454 21.305 13.969 -2.234 1.731 O85 VKA 81 VKA O86 O7 O 0 1 N N N -13.219 9.833 27.666 17.320 -6.652 4.508 O86 VKA 82 VKA C87 C64 C 0 1 N N N -7.778 -12.604 16.274 -22.607 -3.085 -4.195 C87 VKA 83 VKA F82 F1 F 0 1 N N N -11.421 13.393 24.623 16.231 -4.917 -0.712 F82 VKA 84 VKA F83 F2 F 0 1 N N N -10.684 12.073 22.978 14.830 -6.548 0.062 F83 VKA 85 VKA F84 F3 F 0 1 N N N -12.649 13.099 22.793 14.121 -4.378 -0.024 F84 VKA 86 VKA H1 H1 H 0 1 N N N -3.323 -13.682 15.536 -24.508 -6.691 -2.117 H1 VKA 87 VKA H2 H2 H 0 1 N N N -6.029 -10.266 12.356 -22.043 -2.656 0.414 H2 VKA 88 VKA H3 H3 H 0 1 N N N -9.194 -8.108 15.514 -18.376 -1.545 -2.695 H3 VKA 89 VKA H4 H4 H 0 1 N N N -7.439 -8.351 11.618 -20.337 -1.004 1.056 H4 VKA 90 VKA H5 H5 H 0 1 N N N -9.153 -6.052 13.700 -17.842 0.345 -1.273 H5 VKA 91 VKA H6 H6 H 0 1 N N N -10.342 -7.202 12.999 -18.659 0.569 0.293 H6 VKA 92 VKA H7 H7 H 0 1 N N N -7.996 -5.683 9.356 -14.472 -1.572 0.771 H7 VKA 93 VKA H8 H8 H 0 1 N N N -7.804 -9.990 16.249 -20.069 -3.203 -3.353 H8 VKA 94 VKA H9 H9 H 0 1 N N N -9.091 -7.174 10.937 -17.132 -1.804 0.418 H9 VKA 95 VKA H10 H10 H 0 1 N N N -5.282 -3.011 10.206 -12.726 0.269 3.598 H10 VKA 96 VKA H11 H11 H 0 1 N N N -5.908 -2.821 8.533 -14.393 0.901 3.752 H11 VKA 97 VKA H12 H12 H 0 1 N N N -4.281 -4.935 9.247 -14.624 -1.276 4.752 H12 VKA 98 VKA H13 H13 H 0 1 N N N -6.173 -6.822 9.605 -16.339 -1.039 3.073 H13 VKA 99 VKA H14 H14 H 0 1 N N N -5.631 -5.827 10.999 -15.581 -2.582 2.557 H14 VKA 100 VKA H15 H15 H 0 1 N N N -5.373 -6.032 7.541 -12.442 -2.094 4.084 H15 VKA 101 VKA H16 H16 H 0 1 N N N -7.092 -1.096 9.161 -11.695 1.387 2.452 H16 VKA 102 VKA H17 H17 H 0 1 N N N -9.968 -0.568 9.779 -11.225 1.805 -0.399 H17 VKA 103 VKA H18 H18 H 0 1 N N N -8.897 -0.048 12.963 -13.873 3.268 0.060 H18 VKA 104 VKA H19 H19 H 0 1 N N N -9.853 -0.049 11.442 -13.506 4.867 0.750 H19 VKA 105 VKA H20 H20 H 0 1 N N N -9.340 -1.604 12.180 -12.249 3.970 -0.135 H20 VKA 106 VKA H21 H21 H 0 1 N N N -6.485 -0.727 12.928 -13.529 2.684 3.738 H21 VKA 107 VKA H22 H22 H 0 1 N N N -6.926 -2.278 12.137 -14.311 4.063 2.930 H22 VKA 108 VKA H23 H23 H 0 1 N N N -5.709 -1.197 11.378 -14.595 2.408 2.339 H23 VKA 109 VKA H24 H24 H 0 1 N N N -7.214 1.438 11.901 -10.725 4.160 1.836 H24 VKA 110 VKA H25 H25 H 0 1 N N N -6.432 0.961 10.356 -11.982 5.058 2.721 H25 VKA 111 VKA H26 H26 H 0 1 N N N -8.164 1.435 10.377 -11.264 3.594 3.435 H26 VKA 112 VKA H27 H27 H 0 1 N N N -10.241 0.736 6.224 -8.572 1.391 -0.628 H27 VKA 113 VKA H28 H28 H 0 1 N N N -11.165 -0.643 6.912 -8.912 3.130 -0.797 H28 VKA 114 VKA H29 H29 H 0 1 N N N -11.875 1.872 7.560 -7.448 3.605 1.147 H29 VKA 115 VKA H30 H30 H 0 1 N N N -11.867 0.605 8.834 -7.108 1.867 1.315 H30 VKA 116 VKA H31 H31 H 0 1 N N N -10.192 1.641 10.015 -6.136 1.835 -0.966 H31 VKA 117 VKA H32 H32 H 0 1 N N N -9.239 1.990 8.533 -6.477 3.574 -1.135 H32 VKA 118 VKA H33 H33 H 0 1 N N N -10.829 3.827 10.134 -5.012 4.049 0.809 H33 VKA 119 VKA H34 H34 H 0 1 N N N -11.593 3.702 8.513 -4.672 2.310 0.978 H34 VKA 120 VKA H35 H35 H 0 1 N N N -8.803 3.893 8.022 -3.701 2.279 -1.304 H35 VKA 121 VKA H36 H36 H 0 1 N N N -10.052 5.153 7.745 -4.041 4.018 -1.472 H36 VKA 122 VKA H37 H37 H 0 1 N N N -9.666 5.661 10.374 -2.577 4.493 0.471 H37 VKA 123 VKA H38 H38 H 0 1 N N N -8.089 4.854 10.082 -2.237 2.754 0.640 H38 VKA 124 VKA H39 H39 H 0 1 N N N -8.154 6.570 7.971 -1.266 2.723 -1.641 H39 VKA 125 VKA H40 H40 H 0 1 N N N -9.101 7.507 9.176 -1.606 4.462 -1.810 H40 VKA 126 VKA H41 H41 H 0 1 N N N -6.449 6.247 9.964 -0.142 4.937 0.134 H41 VKA 127 VKA H42 H42 H 0 1 N N N -6.477 7.792 9.049 0.199 3.198 0.303 H42 VKA 128 VKA H43 H43 H 0 1 N N N -7.183 8.990 10.845 1.170 3.167 -1.979 H43 VKA 129 VKA H44 H44 H 0 1 N N N -8.323 7.708 11.378 0.830 4.906 -2.148 H44 VKA 130 VKA H45 H45 H 0 1 N N N -7.763 7.420 13.766 3.476 4.485 -2.437 H45 VKA 131 VKA H46 H46 H 0 1 N N N -5.786 5.806 14.692 4.666 5.840 -0.264 H46 VKA 132 VKA H47 H47 H 0 1 N N N -4.850 7.315 14.421 5.006 4.101 -0.095 H47 VKA 133 VKA H48 H48 H 0 1 N N N -5.680 7.033 16.810 5.977 4.069 -2.376 H48 VKA 134 VKA H49 H49 H 0 1 N N N -6.243 8.543 16.017 5.637 5.808 -2.545 H49 VKA 135 VKA H51 H51 H 0 1 N N N -7.169 7.324 18.214 8.392 4.823 -2.781 H51 VKA 136 VKA H52 H52 H 0 1 N N N -7.998 8.696 17.403 7.848 6.517 -2.749 H52 VKA 137 VKA H53 H53 H 0 1 N N N -9.459 7.381 18.975 10.249 6.310 -2.116 H53 VKA 138 VKA H54 H54 H 0 1 N N N -10.075 7.460 17.289 9.269 6.950 -0.775 H54 VKA 139 VKA H56 H56 H 0 1 N N N -9.844 5.608 15.951 9.199 3.767 1.038 H56 VKA 140 VKA H57 H57 H 0 1 N N N -9.050 4.146 16.629 8.655 5.462 1.071 H57 VKA 141 VKA H58 H58 H 0 1 N N N -7.587 5.485 15.073 6.798 3.975 0.405 H58 VKA 142 VKA H59 H59 H 0 1 N N N -6.907 5.264 16.721 7.778 3.335 -0.937 H59 VKA 143 VKA H60 H60 H 0 1 N N N -10.370 5.482 19.479 11.888 5.635 -0.603 H60 VKA 144 VKA H61 H61 H 0 1 N N N -10.268 4.087 18.352 10.997 6.040 0.883 H61 VKA 145 VKA H62 H62 H 0 1 N N N -12.050 7.285 19.072 12.826 3.421 -0.925 H62 VKA 146 VKA H63 H63 H 0 1 N N N -15.044 6.728 15.997 13.069 0.856 2.498 H63 VKA 147 VKA H64 H64 H 0 1 N N N -13.773 4.773 15.123 11.562 2.365 3.724 H64 VKA 148 VKA H65 H65 H 0 1 N N N -11.656 4.071 16.213 10.695 4.395 2.637 H65 VKA 149 VKA H66 H66 H 0 1 N N N -13.497 8.009 20.101 14.175 -0.246 1.594 H66 VKA 150 VKA H67 H67 H 0 1 N N N -16.503 10.889 17.380 15.435 0.819 -3.064 H67 VKA 151 VKA H68 H68 H 0 1 N N N -15.370 8.918 16.349 13.925 2.317 -1.831 H68 VKA 152 VKA H69 H69 H 0 1 N N N -17.013 12.760 18.345 17.559 0.109 -3.148 H69 VKA 153 VKA H70 H70 H 0 1 N N N -18.162 11.597 19.090 18.239 -0.361 -1.572 H70 VKA 154 VKA H71 H71 H 0 1 N N N -18.763 13.976 19.493 19.627 -1.206 -3.461 H71 VKA 155 VKA H72 H72 H 0 1 N N N -18.470 13.050 21.004 18.935 -2.539 -2.506 H72 VKA 156 VKA H74 H74 H 0 1 N N N -16.448 13.442 22.141 16.320 -3.288 -4.959 H74 VKA 157 VKA H75 H75 H 0 1 N N N -15.295 14.631 21.444 17.001 -3.758 -3.382 H75 VKA 158 VKA H76 H76 H 0 1 N N N -14.584 12.267 21.071 14.932 -2.444 -3.070 H76 VKA 159 VKA H77 H77 H 0 1 N N N -14.861 13.161 19.538 15.624 -1.110 -4.025 H77 VKA 160 VKA H78 H78 H 0 1 N N N -16.855 16.052 21.542 19.232 -3.973 -4.493 H78 VKA 161 VKA H79 H79 H 0 1 N N N -18.400 15.810 20.660 18.439 -3.508 -6.017 H79 VKA 162 VKA H80 H80 H 0 1 N N N -18.039 14.833 22.123 19.843 -2.586 -5.427 H80 VKA 163 VKA H81 H81 H 0 1 N N N -15.227 9.780 22.146 16.658 -2.375 0.221 H81 VKA 164 VKA H82 H82 H 0 1 N N N -14.218 8.467 23.585 16.100 -2.596 3.998 H82 VKA 165 VKA H83 H83 H 0 1 N N N -11.490 11.113 26.091 17.191 -6.514 1.851 H83 VKA 166 VKA H84 H84 H 0 1 N N N -13.038 12.022 26.143 15.599 -6.911 2.491 H84 VKA 167 VKA H85 H85 H 0 1 N N N -7.826 -13.504 16.904 -21.869 -3.487 -4.890 H85 VKA 168 VKA H86 H86 H 0 1 N N N -8.023 -11.719 16.880 -23.541 -2.899 -4.725 H86 VKA 169 VKA H87 H87 H 0 1 N N N -8.500 -12.695 15.449 -22.237 -2.151 -3.772 H87 VKA 170 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKA O32 C30 DOUB N N 1 VKA C31 C30 SING N N 2 VKA C31 C32 SING N N 3 VKA C30 N26 SING N N 4 VKA O22 C19 SING N N 5 VKA C32 C33 SING N N 6 VKA C35 C34 SING N N 7 VKA C35 C36 SING N N 8 VKA C33 C34 SING N N 9 VKA C37 C36 SING N N 10 VKA C37 C38 SING N N 11 VKA C19 C18 SING N N 12 VKA C19 C20 SING N N 13 VKA N26 C24 SING N N 14 VKA C18 N17 SING N N 15 VKA C38 C39 SING N N 16 VKA C24 C21 SING N N 17 VKA C24 C25 SING N N 18 VKA N17 C21 SING N N 19 VKA N17 C16 SING N N 20 VKA C20 C16 SING N N 21 VKA C21 O23 DOUB N N 22 VKA C16 C14 SING N N 23 VKA C29 C25 SING N N 24 VKA C39 C40 SING N N 25 VKA C25 C28 SING N N 26 VKA C25 C27 SING N N 27 VKA C14 N13 SING N N 28 VKA C14 O15 DOUB N N 29 VKA N13 C12 SING N N 30 VKA O42 C40 DOUB N N 31 VKA C40 N41 SING N N 32 VKA C10 C7 DOUB Y N 33 VKA C10 C11 SING Y N 34 VKA C12 C11 SING N N 35 VKA C7 C6 SING Y N 36 VKA C11 C9 DOUB Y N 37 VKA N41 C43 SING N N 38 VKA C6 C1 SING N N 39 VKA C6 C DOUB Y N 40 VKA S3 C1 SING Y N 41 VKA S3 C4 SING Y N 42 VKA C43 C44 SING N N 43 VKA C9 C SING Y N 44 VKA C1 C2 DOUB Y N 45 VKA C4 N5 DOUB Y N 46 VKA C2 N5 SING Y N 47 VKA C2 C87 SING N N 48 VKA C57 C56 DOUB Y N 49 VKA C57 C58 SING Y N 50 VKA C44 N45 SING N N 51 VKA C51 N45 SING N N 52 VKA C51 C50 SING N N 53 VKA N45 C47 SING N N 54 VKA C56 C55 SING Y N 55 VKA C58 C53 DOUB Y N 56 VKA C50 N49 SING N N 57 VKA C64 C63 DOUB Y N 58 VKA C64 C59 SING Y N 59 VKA C47 C48 SING N N 60 VKA C55 C59 SING N N 61 VKA C55 C54 DOUB Y N 62 VKA C53 C54 SING Y N 63 VKA C53 C52 SING N N 64 VKA N49 C48 SING N N 65 VKA N49 C52 SING N N 66 VKA C63 C62 SING Y N 67 VKA C59 C60 DOUB Y N 68 VKA C66 N65 SING N N 69 VKA C66 C67 SING N N 70 VKA C62 N65 SING N N 71 VKA C62 C61 DOUB Y N 72 VKA C60 C61 SING Y N 73 VKA N65 C70 SING N N 74 VKA C61 N72 SING N N 75 VKA C67 N68 SING N N 76 VKA C70 C69 SING N N 77 VKA N68 C69 SING N N 78 VKA N68 C71 SING N N 79 VKA O85 C73 DOUB N N 80 VKA N72 C73 SING N N 81 VKA C73 C74 SING N N 82 VKA F84 C80 SING N N 83 VKA F83 C80 SING N N 84 VKA C74 C75 SING N N 85 VKA C74 C79 DOUB N N 86 VKA C80 C79 SING N N 87 VKA C80 F82 SING N N 88 VKA C75 N76 DOUB N N 89 VKA C79 C78 SING N N 90 VKA N76 C77 SING N N 91 VKA C78 C77 SING N N 92 VKA C77 O86 DOUB N N 93 VKA C4 H1 SING N N 94 VKA C7 H2 SING N N 95 VKA C9 H3 SING N N 96 VKA C10 H4 SING N N 97 VKA C12 H5 SING N N 98 VKA C12 H6 SING N N 99 VKA C16 H7 SING N N 100 VKA C H8 SING N N 101 VKA N13 H9 SING N N 102 VKA C18 H10 SING N N 103 VKA C18 H11 SING N N 104 VKA C19 H12 SING N N 105 VKA C20 H13 SING N N 106 VKA C20 H14 SING N N 107 VKA O22 H15 SING N N 108 VKA C24 H16 SING N N 109 VKA N26 H17 SING N N 110 VKA C27 H18 SING N N 111 VKA C27 H19 SING N N 112 VKA C27 H20 SING N N 113 VKA C28 H21 SING N N 114 VKA C28 H22 SING N N 115 VKA C28 H23 SING N N 116 VKA C29 H24 SING N N 117 VKA C29 H25 SING N N 118 VKA C29 H26 SING N N 119 VKA C31 H27 SING N N 120 VKA C31 H28 SING N N 121 VKA C32 H29 SING N N 122 VKA C32 H30 SING N N 123 VKA C33 H31 SING N N 124 VKA C33 H32 SING N N 125 VKA C34 H33 SING N N 126 VKA C34 H34 SING N N 127 VKA C35 H35 SING N N 128 VKA C35 H36 SING N N 129 VKA C36 H37 SING N N 130 VKA C36 H38 SING N N 131 VKA C37 H39 SING N N 132 VKA C37 H40 SING N N 133 VKA C38 H41 SING N N 134 VKA C38 H42 SING N N 135 VKA C39 H43 SING N N 136 VKA C39 H44 SING N N 137 VKA N41 H45 SING N N 138 VKA C43 H46 SING N N 139 VKA C43 H47 SING N N 140 VKA C44 H48 SING N N 141 VKA C44 H49 SING N N 142 VKA C47 H51 SING N N 143 VKA C47 H52 SING N N 144 VKA C48 H53 SING N N 145 VKA C48 H54 SING N N 146 VKA C50 H56 SING N N 147 VKA C50 H57 SING N N 148 VKA C51 H58 SING N N 149 VKA C51 H59 SING N N 150 VKA C52 H60 SING N N 151 VKA C52 H61 SING N N 152 VKA C54 H62 SING N N 153 VKA C56 H63 SING N N 154 VKA C57 H64 SING N N 155 VKA C58 H65 SING N N 156 VKA C60 H66 SING N N 157 VKA C63 H67 SING N N 158 VKA C64 H68 SING N N 159 VKA C66 H69 SING N N 160 VKA C66 H70 SING N N 161 VKA C67 H71 SING N N 162 VKA C67 H72 SING N N 163 VKA C69 H74 SING N N 164 VKA C69 H75 SING N N 165 VKA C70 H76 SING N N 166 VKA C70 H77 SING N N 167 VKA C71 H78 SING N N 168 VKA C71 H79 SING N N 169 VKA C71 H80 SING N N 170 VKA N72 H81 SING N N 171 VKA C75 H82 SING N N 172 VKA C78 H83 SING N N 173 VKA C78 H84 SING N N 174 VKA C87 H85 SING N N 175 VKA C87 H86 SING N N 176 VKA C87 H87 SING N N 177 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKA SMILES ACDLabs 12.01 "c1(c(ncs1)C)c2ccc(cc2)CNC(=O)C8N(C(=O)C(C(C)(C)C)NC(CCCCCCCCCC(NCCN7CCN(Cc6cc(c5cc(NC(C=3C=NC(=O)CC=3C(F)(F)F)=O)c(N4CCN(CC4)C)cc5)ccc6)CC7)=O)=O)CC(C8)O" VKA InChI InChI 1.03 "InChI=1S/C64H84F3N11O7S/c1-43-58(86-42-71-43)46-20-18-44(19-21-46)38-70-61(84)54-36-49(79)41-78(54)62(85)59(63(2,3)4)73-56(81)17-12-10-8-6-7-9-11-16-55(80)68-24-25-75-28-30-76(31-29-75)40-45-14-13-15-47(34-45)48-22-23-53(77-32-26-74(5)27-33-77)52(35-48)72-60(83)50-39-69-57(82)37-51(50)64(65,66)67/h13-15,18-23,34-35,39,42,49,54,59,79H,6-12,16-17,24-33,36-38,40-41H2,1-5H3,(H,68,80)(H,70,84)(H,72,83)(H,73,81)/t49-,54+,59-/m1/s1" VKA InChIKey InChI 1.03 OFTPQBXGPMFYDS-QWQPEEPRSA-N VKA SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=C(CC(=O)N=C3)C(F)(F)F)c4cccc(CN5CCN(CCNC(=O)CCCCCCCCCC(=O)N[C@H](C(=O)N6C[C@H](O)C[C@H]6C(=O)NCc7ccc(cc7)c8scnc8C)C(C)(C)C)CC5)c4" VKA SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=C(CC(=O)N=C3)C(F)(F)F)c4cccc(CN5CCN(CCNC(=O)CCCCCCCCCC(=O)N[CH](C(=O)N6C[CH](O)C[CH]6C(=O)NCc7ccc(cc7)c8scnc8C)C(C)(C)C)CC5)c4" VKA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@@H]3C[C@H](CN3C(=O)[C@H](C(C)(C)C)NC(=O)CCCCCCCCCC(=O)NCCN4CCN(CC4)Cc5cccc(c5)c6ccc(c(c6)NC(=O)C7=C(CC(=O)N=C7)C(F)(F)F)N8CCN(CC8)C)O" VKA SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN3C(=O)C(C(C)(C)C)NC(=O)CCCCCCCCCC(=O)NCCN4CCN(CC4)Cc5cccc(c5)c6ccc(c(c6)NC(=O)C7=C(CC(=O)N=C7)C(F)(F)F)N8CCN(CC8)C)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VKA "SYSTEMATIC NAME" ACDLabs 12.01 "3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide" VKA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]-~{N}-[2-[4-[[3-[4-(4-methylpiperazin-1-yl)-3-[[2-oxidanylidene-4-(trifluoromethyl)-3~{H}-pyridin-5-yl]carbonylamino]phenyl]phenyl]methyl]piperazin-1-yl]ethyl]undecanediamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VKA _pdbx_chem_comp_synonyms.name "Protac MS33" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKA "Create component" 2020-08-20 RCSB VKA "Modify synonyms" 2021-03-01 PDBE VKA "Initial release" 2021-10-06 RCSB ##