data_VKH # _chem_comp.id VKH _chem_comp.name "(1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H16 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-05-25 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OP6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKH N1 N1 N 1 1 N N N -19.284 59.521 50.068 -2.090 1.092 -1.238 N1 VKH 1 VKH C2 C1 C 0 1 N N R -19.860 57.550 48.180 1.584 0.653 -0.397 C2 VKH 2 VKH C4 C2 C 0 1 N N R -19.194 59.741 47.094 0.405 -1.529 -0.098 C4 VKH 3 VKH C5 C3 C 0 1 N N R -18.042 59.749 48.080 -0.944 -0.817 -0.219 C5 VKH 4 VKH C6 C4 C 0 1 N N N -17.914 61.215 48.469 -1.413 -0.374 1.169 C6 VKH 5 VKH O2 O1 O 0 1 N N N -20.870 58.395 48.793 2.545 1.547 0.168 O2 VKH 6 VKH C7 C5 C 0 1 N N S -18.221 58.799 49.294 -0.795 0.408 -1.122 C7 VKH 7 VKH O6 O2 O 0 1 N N N -19.161 61.944 48.357 -2.747 0.128 1.083 O6 VKH 8 VKH O4 O3 O 0 1 N N N -18.862 60.321 45.818 0.842 -1.943 -1.394 O4 VKH 9 VKH C3 C6 C 0 1 N N R -19.653 58.335 46.874 1.434 -0.573 0.506 C3 VKH 10 VKH O3 O4 O 0 1 N N N -20.884 58.609 46.219 0.997 -0.159 1.802 O3 VKH 11 VKH C1 C7 C 0 1 N N N -18.583 57.292 49.046 0.235 1.365 -0.517 C1 VKH 12 VKH H1 H1 H 0 1 N N N -19.502 59.006 50.897 -2.335 1.500 -0.348 H1 VKH 13 VKH H4 H4 H 0 1 N N N -20.303 56.575 47.930 1.918 0.338 -1.385 H4 VKH 14 VKH H5 H5 H 0 1 N N N -20.025 60.308 47.539 0.299 -2.403 0.545 H5 VKH 15 VKH H6 H6 H 0 1 N N N -17.127 59.451 47.548 -1.678 -1.499 -0.650 H6 VKH 16 VKH H7 H7 H 0 1 N N N -17.568 61.272 49.512 -1.388 -1.225 1.849 H7 VKH 17 VKH H8 H8 H 0 1 N N N -17.171 61.688 47.810 -0.753 0.409 1.542 H8 VKH 18 VKH H9 H9 H 0 1 N N N -21.115 58.035 49.637 3.426 1.161 0.274 H9 VKH 19 VKH H10 H10 H 0 1 N N N -17.290 58.824 49.879 -0.461 0.093 -2.111 H10 VKH 20 VKH H11 H11 H 0 1 N N N -19.023 62.849 48.611 -3.110 0.428 1.928 H11 VKH 21 VKH H12 H12 H 0 1 N N N -18.568 61.216 45.943 1.693 -2.403 -1.394 H12 VKH 22 VKH H13 H13 H 0 1 N N N -18.953 57.797 46.218 2.395 -1.080 0.592 H13 VKH 23 VKH H14 H14 H 0 1 N N N -21.317 57.792 46.003 1.602 0.450 2.246 H14 VKH 24 VKH H15 H15 H 0 1 N N N -18.807 56.753 49.978 -0.099 1.681 0.471 H15 VKH 25 VKH H2 H2 H 0 1 N N N -18.954 60.431 50.318 -2.025 1.819 -1.935 H2 VKH 26 VKH H16 H16 H 0 1 N N N -17.799 56.755 48.492 0.341 2.239 -1.161 H16 VKH 27 VKH H3 H3 H 0 1 N N N -20.106 59.608 49.504 -2.798 0.427 -1.510 H3 VKH 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKH O4 C4 SING N N 1 VKH O3 C3 SING N N 2 VKH C3 C4 SING N N 3 VKH C3 C2 SING N N 4 VKH C4 C5 SING N N 5 VKH C5 C6 SING N N 6 VKH C5 C7 SING N N 7 VKH C2 O2 SING N N 8 VKH C2 C1 SING N N 9 VKH O6 C6 SING N N 10 VKH C1 C7 SING N N 11 VKH C7 N1 SING N N 12 VKH N1 H1 SING N N 13 VKH C2 H4 SING N N 14 VKH C4 H5 SING N N 15 VKH C5 H6 SING N N 16 VKH C6 H7 SING N N 17 VKH C6 H8 SING N N 18 VKH O2 H9 SING N N 19 VKH C7 H10 SING N N 20 VKH O6 H11 SING N N 21 VKH O4 H12 SING N N 22 VKH C3 H13 SING N N 23 VKH O3 H14 SING N N 24 VKH C1 H15 SING N N 25 VKH H2 N1 SING N N 26 VKH C1 H16 SING N N 27 VKH H3 N1 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKH InChI InChI 1.03 "InChI=1S/C7H15NO4/c8-4-1-5(10)7(12)6(11)3(4)2-9/h3-7,9-12H,1-2,8H2/p+1/t3-,4-,5+,6+,7+/m0/s1" VKH InChIKey InChI 1.03 FGLYJEXIORSHSO-PAMBMQIZSA-O VKH SMILES_CANONICAL CACTVS 3.385 "[NH3+][C@H]1C[C@@H](O)[C@@H](O)[C@H](O)[C@H]1CO" VKH SMILES CACTVS 3.385 "[NH3+][CH]1C[CH](O)[CH](O)[CH](O)[CH]1CO" VKH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@@H]([C@@H]1O)O)O)CO)[NH3+]" VKH SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(C1O)O)O)CO)[NH3+]" # _pdbx_chem_comp_identifier.comp_id VKH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{S},2~{R},3~{R},4~{R},5~{R})-2-(hydroxymethyl)-3,4,5-tris(oxidanyl)cyclohexyl]azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKH "Create component" 2021-05-25 PDBE VKH "Other modification" 2021-07-19 EBI VKH "Other modification" 2021-07-20 PDBE VKH "Other modification" 2021-07-21 PDBE VKH "Initial release" 2022-02-02 RCSB ##