data_VKK # _chem_comp.id VKK _chem_comp.name "p-coumaroyl glucose" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-25 _chem_comp.pdbx_modified_date 2022-04-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 326.299 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ONF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKK "O5'" O1 O 0 1 N N N 33.454 21.536 28.130 -2.312 -0.707 -0.301 "O5'" VKK 1 VKK "C5'" C1 C 0 1 N N R 32.277 20.992 27.463 -3.641 -1.144 -0.007 "C5'" VKK 2 VKK "C4'" C2 C 0 1 N N S 32.501 21.140 25.930 -4.641 -0.086 -0.478 "C4'" VKK 3 VKK "O4'" O2 O 0 1 N N N 31.300 20.637 25.287 -5.966 -0.495 -0.134 "O4'" VKK 4 VKK "C3'" C3 C 0 1 N N S 32.736 22.579 25.530 -4.322 1.247 0.206 "C3'" VKK 5 VKK "O3'" O3 O 0 1 N N N 33.072 22.633 24.135 -5.205 2.259 -0.283 "O3'" VKK 6 VKK "C2'" C4 C 0 1 N N R 33.853 23.154 26.382 -2.874 1.636 -0.108 "C2'" VKK 7 VKK "O2'" O4 O 0 1 N N N 34.028 24.571 26.167 -2.542 2.841 0.584 "O2'" VKK 8 VKK "C1'" C5 C 0 1 N N S 33.551 22.924 27.857 -1.942 0.511 0.349 "C1'" VKK 9 VKK C8 C6 C 0 1 Y N N 37.604 26.312 34.833 6.761 0.219 -0.340 C8 VKK 10 VKK C5 C7 C 0 1 Y N N 35.916 25.171 32.971 4.103 -0.302 0.250 C5 VKK 11 VKK C6 C8 C 0 1 Y N N 37.227 25.483 32.622 4.448 0.829 -0.500 C6 VKK 12 VKK C2 C9 C 0 1 N N N 34.239 23.932 29.857 0.370 -0.002 0.436 C2 VKK 13 VKK C4 C10 C 0 1 N N N 35.061 24.596 31.962 2.694 -0.579 0.562 C4 VKK 14 VKK "C6'" C11 C 0 1 N N N 32.211 19.559 27.929 -3.915 -2.464 -0.730 "C6'" VKK 15 VKK "O6'" O5 O 0 1 N N N 33.267 18.752 27.334 -3.058 -3.481 -0.208 "O6'" VKK 16 VKK "O1'" O6 O 0 1 N N N 34.653 23.408 28.643 -0.594 0.841 0.009 "O1'" VKK 17 VKK C3 C12 C 0 1 N N N 35.339 24.415 30.667 1.729 0.265 0.135 C3 VKK 18 VKK C7 C13 C 0 1 Y N N 38.073 26.035 33.558 5.769 1.086 -0.786 C7 VKK 19 VKK C9 C14 C 0 1 Y N N 36.285 26.030 35.196 6.423 -0.912 0.396 C9 VKK 20 VKK C10 C15 C 0 1 Y N N 35.447 25.454 34.257 5.105 -1.175 0.692 C10 VKK 21 VKK O8 O7 O 0 1 N N N 38.507 26.856 35.718 8.062 0.473 -0.630 O8 VKK 22 VKK O2 O8 O 0 1 N N N 33.069 23.954 30.262 0.072 -0.990 1.080 O2 VKK 23 VKK H1 H1 H 0 1 N N N 31.367 21.534 27.760 -3.746 -1.291 1.068 H1 VKK 24 VKK H2 H2 H 0 1 N N N 33.371 20.533 25.638 -4.565 0.032 -1.559 H2 VKK 25 VKK H3 H3 H 0 1 N N N 31.158 19.733 25.542 -6.653 0.130 -0.404 H3 VKK 26 VKK H4 H4 H 0 1 N N N 31.817 23.154 25.716 -4.446 1.143 1.284 H4 VKK 27 VKK H5 H5 H 0 1 N N N 33.221 23.536 23.879 -5.059 3.131 0.108 H5 VKK 28 VKK H6 H6 H 0 1 N N N 34.787 22.628 26.133 -2.762 1.788 -1.181 H6 VKK 29 VKK H7 H7 H 0 1 N N N 34.734 24.890 26.717 -1.638 3.146 0.431 H7 VKK 30 VKK H8 H8 H 0 1 N N N 32.621 23.446 28.127 -2.024 0.386 1.429 H8 VKK 31 VKK H9 H9 H 0 1 N N N 37.580 25.293 31.619 3.679 1.505 -0.844 H9 VKK 32 VKK H10 H10 H 0 1 N N N 34.084 24.275 32.290 2.430 -1.456 1.134 H10 VKK 33 VKK H11 H11 H 0 1 N N N 31.236 19.136 27.645 -4.956 -2.752 -0.579 H11 VKK 34 VKK H12 H12 H 0 1 N N N 32.317 19.534 29.024 -3.725 -2.340 -1.796 H12 VKK 35 VKK H13 H13 H 0 1 N N N 33.197 17.858 27.647 -3.178 -4.347 -0.622 H13 VKK 36 VKK H14 H14 H 0 1 N N N 36.316 24.615 30.253 1.994 1.143 -0.437 H14 VKK 37 VKK H15 H15 H 0 1 N N N 39.099 26.252 33.300 6.037 1.962 -1.357 H15 VKK 38 VKK H16 H16 H 0 1 N N N 35.926 26.257 36.189 7.197 -1.584 0.736 H16 VKK 39 VKK H17 H17 H 0 1 N N N 34.425 25.222 34.519 4.844 -2.049 1.271 H17 VKK 40 VKK H18 H18 H 0 1 N N N 38.082 27.004 36.554 8.364 0.083 -1.461 H18 VKK 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKK "O3'" "C3'" SING N N 1 VKK "O4'" "C4'" SING N N 2 VKK "C3'" "C4'" SING N N 3 VKK "C3'" "C2'" SING N N 4 VKK "C4'" "C5'" SING N N 5 VKK "O2'" "C2'" SING N N 6 VKK "C2'" "C1'" SING N N 7 VKK "O6'" "C6'" SING N N 8 VKK "C5'" "C6'" SING N N 9 VKK "C5'" "O5'" SING N N 10 VKK "C1'" "O5'" SING N N 11 VKK "C1'" "O1'" SING N N 12 VKK "O1'" C2 SING N N 13 VKK C2 O2 DOUB N N 14 VKK C2 C3 SING N N 15 VKK C3 C4 DOUB N E 16 VKK C4 C5 SING N N 17 VKK C6 C5 DOUB Y N 18 VKK C6 C7 SING Y N 19 VKK C5 C10 SING Y N 20 VKK C7 C8 DOUB Y N 21 VKK C10 C9 DOUB Y N 22 VKK C8 C9 SING Y N 23 VKK C8 O8 SING N N 24 VKK "C5'" H1 SING N N 25 VKK "C4'" H2 SING N N 26 VKK "O4'" H3 SING N N 27 VKK "C3'" H4 SING N N 28 VKK "O3'" H5 SING N N 29 VKK "C2'" H6 SING N N 30 VKK "O2'" H7 SING N N 31 VKK "C1'" H8 SING N N 32 VKK C6 H9 SING N N 33 VKK C4 H10 SING N N 34 VKK "C6'" H11 SING N N 35 VKK "C6'" H12 SING N N 36 VKK "O6'" H13 SING N N 37 VKK C3 H14 SING N N 38 VKK C7 H15 SING N N 39 VKK C9 H16 SING N N 40 VKK C10 H17 SING N N 41 VKK O8 H18 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKK InChI InChI 1.03 "InChI=1S/C15H18O8/c16-7-10-12(19)13(20)14(21)15(22-10)23-11(18)6-3-8-1-4-9(17)5-2-8/h1-6,10,12-17,19-21H,7H2/b6-3+/t10-,12-,13+,14-,15+/m1/s1" VKK InChIKey InChI 1.03 DSNCQKUYZOSARM-QVLXMGEUSA-N VKK SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](OC(=O)\C=C\c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O" VKK SMILES CACTVS 3.385 "OC[CH]1O[CH](OC(=O)C=Cc2ccc(O)cc2)[CH](O)[CH](O)[CH]1O" VKK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O" VKK SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)OC2C(C(C(C(O2)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id VKK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VKK _pdbx_chem_comp_synonyms.name "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (~{E})-3-(4-hydroxyphenyl)prop-2-enoate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKK "Create component" 2021-05-25 PDBE VKK "Initial release" 2022-04-06 RCSB ##