data_VKL # _chem_comp.id VKL _chem_comp.name "3-[3,4-bis(fluoranyl)phenyl]-5-methyl-1$l^{4},4,5$l^{4},7-tetrazabicyclo[4.3.0]nona-1(6),2,4-triene" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H12 F2 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2023-03-09 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S9Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKL C C1 C 0 1 N N N 34.792 -7.050 -4.464 2.707 2.701 0.023 C VKL 1 VKL C4 C2 C 0 1 Y N N 37.960 -5.847 -3.366 0.365 -0.043 0.037 C4 VKL 2 VKL C5 C3 C 0 1 Y N N 35.745 -4.814 -4.573 3.009 0.306 0.062 C5 VKL 3 VKL C6 C4 C 0 1 N N N 35.031 -2.833 -5.273 4.860 -1.019 -0.319 C6 VKL 4 VKL N1 N1 N 1 1 Y N N 35.834 -6.113 -4.184 2.164 1.341 0.036 N1 VKL 5 VKL C7 C5 C 0 1 N N N 36.516 -2.694 -4.949 3.651 -1.892 0.090 C7 VKL 6 VKL C8 C6 C 0 1 Y N N 38.078 -4.448 -3.907 1.227 -1.143 0.062 C8 VKL 7 VKL N2 N2 N 0 1 N N N 34.743 -4.269 -5.164 4.400 0.329 0.085 N2 VKL 8 VKL C11 C7 C 0 1 Y N N 38.958 -7.410 -1.699 -1.954 0.871 -0.007 C11 VKL 9 VKL C10 C8 C 0 1 Y N N 40.073 -7.972 -1.117 -3.323 0.687 -0.024 C10 VKL 10 VKL N3 N3 N 1 1 Y N N 36.749 -3.978 -4.274 2.533 -0.932 0.072 N3 VKL 11 VKL N N4 N 0 1 Y N N 36.942 -6.619 -3.517 0.890 1.179 0.023 N VKL 12 VKL C9 C9 C 0 1 Y N N 41.330 -7.562 -1.457 -3.853 -0.595 -0.015 C9 VKL 13 VKL C1 C10 C 0 1 Y N N 41.520 -6.559 -2.370 -3.012 -1.696 0.010 C1 VKL 14 VKL C2 C11 C 0 1 Y N N 40.414 -5.975 -2.960 -1.643 -1.521 0.027 C2 VKL 15 VKL C3 C12 C 0 1 Y N N 39.131 -6.402 -2.649 -1.106 -0.235 0.019 C3 VKL 16 VKL F F1 F 0 1 N N N 42.396 -8.167 -0.890 -5.192 -0.772 -0.032 F VKL 17 VKL F1 F2 F 0 1 N N N 39.945 -8.937 -0.182 -4.148 1.757 -0.048 F1 VKL 18 VKL H1 H1 H 0 1 N N N 35.077 -8.041 -4.081 2.854 3.024 -1.008 H1 VKL 19 VKL H3 H2 H 0 1 N N N 33.863 -6.721 -3.976 2.008 3.376 0.518 H3 VKL 20 VKL H2 H3 H 0 1 N N N 34.634 -7.109 -5.551 3.661 2.717 0.548 H2 VKL 21 VKL H4 H4 H 0 1 N N N 34.425 -2.263 -4.554 5.755 -1.308 0.231 H4 VKL 22 VKL H5 H5 H 0 1 N N N 34.824 -2.475 -6.292 5.031 -1.068 -1.394 H5 VKL 23 VKL H6 H6 H 0 1 N N N 37.125 -2.595 -5.859 3.488 -2.689 -0.635 H6 VKL 24 VKL H7 H7 H 0 1 N N N 36.711 -1.841 -4.283 3.792 -2.302 1.091 H7 VKL 25 VKL H8 H8 H 0 1 N N N 38.995 -3.886 -4.007 0.833 -2.149 0.075 H8 VKL 26 VKL H9 H9 H 0 1 N N N 33.920 -4.735 -5.489 4.761 1.036 -0.537 H9 VKL 27 VKL H10 H10 H 0 1 N N N 37.968 -7.743 -1.425 -1.542 1.869 -0.018 H10 VKL 28 VKL H15 H15 H 0 1 N N N 40.551 -5.175 -3.673 -0.989 -2.380 0.047 H15 VKL 29 VKL H11 H11 H 0 1 N N N 42.517 -6.230 -2.625 -3.428 -2.692 0.017 H11 VKL 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKL C N1 SING N N 1 VKL C4 C8 DOUB Y N 2 VKL C4 N SING Y N 3 VKL C4 C3 SING N N 4 VKL C5 N1 SING Y N 5 VKL C5 N2 SING N N 6 VKL C5 N3 DOUB Y N 7 VKL C6 C7 SING N N 8 VKL C6 N2 SING N N 9 VKL N1 N DOUB Y N 10 VKL C7 N3 SING N N 11 VKL C8 N3 SING Y N 12 VKL C11 C10 SING Y N 13 VKL C11 C3 DOUB Y N 14 VKL C10 F1 SING N N 15 VKL C9 F SING N N 16 VKL C2 C3 SING Y N 17 VKL C H1 SING N N 18 VKL C H3 SING N N 19 VKL C H2 SING N N 20 VKL C6 H4 SING N N 21 VKL C6 H5 SING N N 22 VKL C7 H6 SING N N 23 VKL C7 H7 SING N N 24 VKL C8 H8 SING N N 25 VKL N2 H9 SING N N 26 VKL C11 H10 SING N N 27 VKL C2 H15 SING N N 28 VKL C9 C10 DOUB Y N 29 VKL C1 C2 DOUB Y N 30 VKL C1 C9 SING Y N 31 VKL C1 H11 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKL InChI InChI 1.06 "InChI=1S/C12H11F2N4/c1-17-12-15-4-5-18(12)7-11(16-17)8-2-3-9(13)10(14)6-8/h2-3,6-7H,4-5H2,1H3/q+1/p+1" VKL InChIKey InChI 1.06 LPONEBABNALWCF-UHFFFAOYSA-O VKL SMILES_CANONICAL CACTVS 3.385 "C[n+]1nc(c[n+]2CCNc12)c3ccc(F)c(F)c3" VKL SMILES CACTVS 3.385 "C[n+]1nc(c[n+]2CCNc12)c3ccc(F)c(F)c3" VKL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1c2[n+](cc(n1)c3ccc(c(c3)F)F)CCN2" VKL SMILES "OpenEye OEToolkits" 2.0.7 "C[n+]1c2[n+](cc(n1)c3ccc(c(c3)F)F)CCN2" # _pdbx_chem_comp_identifier.comp_id VKL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3,4-bis(fluoranyl)phenyl]-1-methyl-7,8-dihydro-6~{H}-imidazo[2,1-c][1,2,4]triazine-1,5-diium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKL "Create component" 2023-03-09 PDBE VKL "Initial release" 2023-05-24 RCSB #