data_VKM # _chem_comp.id VKM _chem_comp.name "1-({3-[(3R,5R)-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl}methyl)-7-methyl-1,7-dihydro-6H-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H17 F N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-21 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 396.375 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JUP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKM C1 C1 C 0 1 N N N 56.494 61.964 83.382 6.538 1.927 -1.720 C1 VKM 1 VKM C13 C2 C 0 1 Y N N 60.913 60.470 87.841 1.391 0.487 1.377 C13 VKM 2 VKM C15 C3 C 0 1 Y N N 62.478 61.700 88.407 -0.491 -0.068 0.585 C15 VKM 3 VKM C18 C4 C 0 1 N N R 63.153 62.949 88.879 -1.755 -0.827 0.270 C18 VKM 4 VKM C20 C5 C 0 1 N N R 64.699 64.392 87.731 -3.744 0.207 -0.683 C20 VKM 5 VKM C23 C6 C 0 1 Y N N 65.968 65.218 87.784 -5.234 0.147 -0.469 C23 VKM 6 VKM C24 C7 C 0 1 Y N N 65.914 66.587 87.484 -5.856 -1.073 -0.282 C24 VKM 7 VKM C25 C8 C 0 1 Y N N 67.086 67.298 87.222 -7.223 -1.130 -0.086 C25 VKM 8 VKM C26 C9 C 0 1 Y N N 68.315 66.645 87.301 -7.969 0.036 -0.076 C26 VKM 9 VKM C28 C10 C 0 1 Y N N 67.213 64.588 87.913 -5.977 1.312 -0.454 C28 VKM 10 VKM C6 C11 C 0 1 Y N N 57.050 62.063 85.854 5.474 0.099 -0.316 C6 VKM 11 VKM C7 C12 C 0 1 N N N 57.918 60.919 86.018 4.470 0.705 0.464 C7 VKM 12 VKM N9 N1 N 0 1 N N N 58.515 60.889 87.243 3.750 -0.077 1.299 N9 VKM 13 VKM O21 O1 O 0 1 N N N 63.580 65.118 88.216 -3.309 -0.894 -1.517 O21 VKM 14 VKM C10 C13 C 0 1 N N N 58.162 61.797 88.225 3.997 -1.410 1.375 C10 VKM 15 VKM C12 C14 C 0 1 N N N 59.561 59.876 87.545 2.697 0.517 2.128 C12 VKM 16 VKM C19 C15 C 0 1 N N N 64.651 63.104 88.552 -2.997 0.007 0.655 C19 VKM 17 VKM C22 C16 C 0 1 N N N 62.516 64.171 88.229 -1.896 -1.036 -1.254 C22 VKM 18 VKM C27 C17 C 0 1 Y N N 68.384 65.306 87.673 -7.345 1.258 -0.263 C27 VKM 19 VKM C3 C18 C 0 1 Y N N 55.727 63.652 85.119 7.093 -0.523 -1.659 C3 VKM 20 VKM C5 C19 C 0 1 Y N N 56.774 62.958 86.825 5.683 -1.277 -0.196 C5 VKM 21 VKM F29 F1 F 0 1 N N N 69.450 67.304 87.024 -9.305 -0.018 0.116 F29 VKM 22 VKM N11 N2 N 0 1 N N N 57.327 62.817 88.067 4.920 -1.986 0.661 N11 VKM 23 VKM N14 N3 N 0 1 Y N N 61.129 61.704 88.207 0.500 -0.476 1.397 N14 VKM 24 VKM N16 N4 N 0 1 Y N N 63.075 60.543 88.185 -0.164 1.104 0.129 N16 VKM 25 VKM N2 N5 N 0 1 Y N N 56.388 62.502 84.734 6.380 0.547 -1.253 N2 VKM 26 VKM N4 N6 N 0 1 Y N N 55.922 63.928 86.398 6.681 -1.595 -1.037 N4 VKM 27 VKM O17 O2 O 0 1 Y N N 62.021 59.696 87.819 0.915 1.439 0.569 O17 VKM 28 VKM O8 O3 O 0 1 N N N 58.110 60.076 85.156 4.256 1.903 0.389 O8 VKM 29 VKM H31 H1 H 0 1 N N N 57.085 61.036 83.401 5.892 2.095 -2.582 H31 VKM 30 VKM H30 H2 H 0 1 N N N 55.488 61.750 82.993 6.263 2.615 -0.920 H30 VKM 31 VKM H32 H3 H 0 1 N N N 56.990 62.700 82.732 7.576 2.097 -2.005 H32 VKM 32 VKM H37 H4 H 0 1 N N N 63.028 63.029 89.969 -1.763 -1.785 0.789 H37 VKM 33 VKM H40 H5 H 0 1 N N N 64.520 64.122 86.680 -3.464 1.159 -1.136 H40 VKM 34 VKM H43 H6 H 0 1 N N N 64.961 67.094 87.456 -5.274 -1.983 -0.290 H43 VKM 35 VKM H44 H7 H 0 1 N N N 67.041 68.345 86.960 -7.708 -2.084 0.060 H44 VKM 36 VKM H46 H8 H 0 1 N N N 67.266 63.548 88.198 -5.490 2.266 -0.595 H46 VKM 37 VKM H34 H9 H 0 1 N N N 58.603 61.665 89.202 3.407 -2.013 2.050 H34 VKM 38 VKM H36 H10 H 0 1 N N N 59.238 59.294 88.421 2.958 1.549 2.362 H36 VKM 39 VKM H35 H11 H 0 1 N N N 59.658 59.208 86.677 2.598 -0.052 3.052 H35 VKM 40 VKM H38 H12 H 0 1 N N N 65.017 62.249 87.965 -3.621 -0.539 1.362 H38 VKM 41 VKM H39 H13 H 0 1 N N N 65.247 63.200 89.471 -2.697 0.969 1.072 H39 VKM 42 VKM H41 H14 H 0 1 N N N 61.667 64.538 88.824 -1.332 -0.274 -1.793 H41 VKM 43 VKM H42 H15 H 0 1 N N N 62.176 63.944 87.208 -1.555 -2.032 -1.536 H42 VKM 44 VKM H45 H16 H 0 1 N N N 69.344 64.823 87.776 -7.926 2.168 -0.256 H45 VKM 45 VKM H33 H17 H 0 1 N N N 55.123 64.254 84.456 7.887 -0.498 -2.391 H33 VKM 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKM C1 N2 SING N N 1 VKM N2 C3 SING Y N 2 VKM N2 C6 SING Y N 3 VKM C3 N4 DOUB Y N 4 VKM O8 C7 DOUB N N 5 VKM C6 C7 SING N N 6 VKM C6 C5 DOUB Y N 7 VKM C7 N9 SING N N 8 VKM N4 C5 SING Y N 9 VKM C5 N11 SING N N 10 VKM F29 C26 SING N N 11 VKM C25 C26 DOUB Y N 12 VKM C25 C24 SING Y N 13 VKM N9 C12 SING N N 14 VKM N9 C10 SING N N 15 VKM C26 C27 SING Y N 16 VKM C24 C23 DOUB Y N 17 VKM C12 C13 SING N N 18 VKM C27 C28 DOUB Y N 19 VKM C20 C23 SING N N 20 VKM C20 O21 SING N N 21 VKM C20 C19 SING N N 22 VKM C23 C28 SING Y N 23 VKM O17 C13 SING Y N 24 VKM O17 N16 SING Y N 25 VKM C13 N14 DOUB Y N 26 VKM N11 C10 DOUB N N 27 VKM N16 C15 DOUB Y N 28 VKM N14 C15 SING Y N 29 VKM O21 C22 SING N N 30 VKM C22 C18 SING N N 31 VKM C15 C18 SING N N 32 VKM C19 C18 SING N N 33 VKM C1 H31 SING N N 34 VKM C1 H30 SING N N 35 VKM C1 H32 SING N N 36 VKM C18 H37 SING N N 37 VKM C20 H40 SING N N 38 VKM C24 H43 SING N N 39 VKM C25 H44 SING N N 40 VKM C28 H46 SING N N 41 VKM C10 H34 SING N N 42 VKM C12 H36 SING N N 43 VKM C12 H35 SING N N 44 VKM C19 H38 SING N N 45 VKM C19 H39 SING N N 46 VKM C22 H41 SING N N 47 VKM C22 H42 SING N N 48 VKM C27 H45 SING N N 49 VKM C3 H33 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKM SMILES ACDLabs 12.01 "Cn5c4C(N(Cc3nc(C2CC(c1ccc(cc1)F)OC2)no3)C=Nc4nc5)=O" VKM InChI InChI 1.03 "InChI=1S/C19H17FN6O3/c1-25-9-21-18-16(25)19(27)26(10-22-18)7-15-23-17(24-29-15)12-6-14(28-8-12)11-2-4-13(20)5-3-11/h2-5,9-10,12,14H,6-8H2,1H3/t12-,14+/m0/s1" VKM InChIKey InChI 1.03 KVSPYEYQFMGJNK-GXTWGEPZSA-N VKM SMILES_CANONICAL CACTVS 3.385 "Cn1cnc2N=CN(Cc3onc(n3)[C@@H]4CO[C@H](C4)c5ccc(F)cc5)C(=O)c12" VKM SMILES CACTVS 3.385 "Cn1cnc2N=CN(Cc3onc(n3)[CH]4CO[CH](C4)c5ccc(F)cc5)C(=O)c12" VKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cnc2c1C(=O)N(C=N2)Cc3nc(no3)[C@H]4C[C@@H](OC4)c5ccc(cc5)F" VKM SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cnc2c1C(=O)N(C=N2)Cc3nc(no3)C4CC(OC4)c5ccc(cc5)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VKM "SYSTEMATIC NAME" ACDLabs 12.01 "1-({3-[(3R,5R)-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl}methyl)-7-methyl-1,7-dihydro-6H-purin-6-one" VKM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[[3-[(3~{R},5~{R})-5-(4-fluorophenyl)oxolan-3-yl]-1,2,4-oxadiazol-5-yl]methyl]-7-methyl-purin-6-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKM "Create component" 2020-08-21 RCSB VKM "Initial release" 2021-03-31 RCSB ##