data_VKN # _chem_comp.id VKN _chem_comp.name "(1R,2S,4S,5R)-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-25 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OMI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKN C1 C1 C 0 1 N N S 45.709 101.558 18.525 1.382 -1.242 0.546 C1 VKN 1 VKN C2 C2 C 0 1 N N N 44.808 101.864 19.717 1.848 0.115 0.014 C2 VKN 2 VKN C7 C3 C 0 1 N N R 46.583 100.334 18.815 0.016 -1.582 -0.053 C7 VKN 3 VKN C5 C4 C 0 1 N N N 47.378 100.450 20.117 -0.996 -0.504 0.342 C5 VKN 4 VKN C6 C5 C 0 1 N N N 48.394 99.316 20.274 -2.363 -0.844 -0.256 C6 VKN 5 VKN O6 O1 O 0 1 N N N 47.754 98.040 20.398 -3.333 0.097 0.207 O6 VKN 6 VKN C4 C6 C 0 1 N N R 46.414 100.602 21.285 -0.530 0.853 -0.190 C4 VKN 7 VKN O4 O2 O 0 1 N N N 47.102 100.827 22.526 -1.475 1.859 0.179 O4 VKN 8 VKN C3 C7 C 0 1 N N S 45.469 101.799 21.088 0.836 1.193 0.408 C3 VKN 9 VKN O3 O3 O 0 1 N N N 44.430 101.671 22.055 1.272 2.460 -0.088 O3 VKN 10 VKN O2 O4 O 0 1 N Y N 43.750 100.890 19.777 1.953 0.058 -1.410 O2 VKN 11 VKN O5 O5 O 0 1 N N N 45.662 99.247 18.904 0.120 -1.639 -1.477 O5 VKN 12 VKN H1 H1 H 0 1 N N N 45.054 101.295 17.682 2.103 -2.009 0.265 H1 VKN 13 VKN O1 O6 O 0 1 N N N 46.347 102.400 18.354 1.278 -1.185 1.970 O1 VKN 14 VKN H2 H3 H 0 1 N N N 44.380 102.868 19.582 2.822 0.357 0.440 H2 VKN 15 VKN H6 H4 H 0 1 N N N 47.281 100.183 17.978 -0.316 -2.548 0.326 H6 VKN 16 VKN H5 H5 H 0 1 N N N 47.954 101.385 20.055 -1.076 -0.461 1.428 H5 VKN 17 VKN H61 H6 H 0 1 N N N 49.050 99.301 19.391 -2.304 -0.801 -1.344 H61 VKN 18 VKN H62 H7 H 0 1 N N N 48.997 99.501 21.175 -2.655 -1.848 0.052 H62 VKN 19 VKN HO6 H8 H 0 1 N N N 48.413 97.363 20.493 -4.225 -0.058 -0.133 HO6 VKN 20 VKN H4 H9 H 0 1 N N N 45.806 99.688 21.358 -0.451 0.809 -1.276 H4 VKN 21 VKN HO4 H10 H 0 1 N N N 46.468 100.916 23.228 -1.243 2.747 -0.126 HO4 VKN 22 VKN H3 H11 H 0 1 N N N 46.034 102.727 21.256 0.757 1.236 1.495 H3 VKN 23 VKN HO3 H12 H 0 1 N N N 44.810 101.628 22.925 2.133 2.740 0.250 HO3 VKN 24 VKN HO2 H13 H 0 1 N N N 43.187 101.078 20.519 2.244 0.886 -1.816 HO2 VKN 25 VKN HO5 H14 H 0 1 N N N 46.136 98.444 19.084 0.746 -2.302 -1.799 HO5 VKN 26 VKN H7 H15 H 0 1 N N N 45.817 103.168 18.173 2.109 -0.973 2.417 H7 VKN 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKN C1 C7 SING N N 1 VKN C1 C2 SING N N 2 VKN C7 O5 SING N N 3 VKN C7 C5 SING N N 4 VKN C2 O2 SING N N 5 VKN C2 C3 SING N N 6 VKN C5 C6 SING N N 7 VKN C5 C4 SING N N 8 VKN C6 O6 SING N N 9 VKN C3 C4 SING N N 10 VKN C3 O3 SING N N 11 VKN C4 O4 SING N N 12 VKN C1 H1 SING N N 13 VKN C1 O1 SING N N 14 VKN C2 H2 SING N N 15 VKN C7 H6 SING N N 16 VKN C5 H5 SING N N 17 VKN C6 H61 SING N N 18 VKN C6 H62 SING N N 19 VKN O6 HO6 SING N N 20 VKN C4 H4 SING N N 21 VKN O4 HO4 SING N N 22 VKN C3 H3 SING N N 23 VKN O3 HO3 SING N N 24 VKN O2 HO2 SING N N 25 VKN O5 HO5 SING N N 26 VKN O1 H7 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKN InChI InChI 1.03 "InChI=1S/C7H14O6/c8-1-2-3(9)5(11)7(13)6(12)4(2)10/h2-13H,1H2/t2-,3-,4-,5+,6+,7+/m1/s1" VKN InChIKey InChI 1.03 QFYQIWDMMSKNFF-MAFUWASYSA-N VKN SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O" VKN SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O" VKN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C1[C@H]([C@@H](C([C@H]([C@@H]1O)O)O)O)O)O" VKN SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id VKN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKN "Create component" 2021-05-25 PDBE VKN "Modify name" 2021-05-27 PDBE VKN "Initial release" 2022-02-02 RCSB ##