data_VKP # _chem_comp.id VKP _chem_comp.name "6-(4-amino-4-methylpiperidin-1-yl)-3-[(2,3-dichlorophenyl)sulfanyl]pyrazin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 Cl2 N5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-24 _chem_comp.pdbx_modified_date 2020-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JVN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKP C1 C1 C 0 1 Y N N 21.125 41.047 5.418 -0.530 -1.510 -0.038 C1 VKP 1 VKP C2 C2 C 0 1 Y N N 22.051 42.363 3.792 0.827 0.090 -0.964 C2 VKP 2 VKP C3 C3 C 0 1 Y N N 23.087 41.412 3.567 1.946 -0.565 -0.470 C3 VKP 3 VKP C11 C4 C 0 1 Y N N 18.401 40.758 5.973 -3.197 -0.922 -0.419 C11 VKP 4 VKP C12 C5 C 0 1 Y N N 18.268 40.380 4.619 -3.820 -1.138 -1.642 C12 VKP 5 VKP C13 C6 C 0 1 Y N N 16.988 40.273 4.033 -4.648 -0.169 -2.175 C13 VKP 6 VKP C14 C7 C 0 1 Y N N 15.840 40.568 4.795 -4.857 1.016 -1.493 C14 VKP 7 VKP C15 C8 C 0 1 Y N N 15.986 40.863 6.165 -4.239 1.236 -0.275 C15 VKP 8 VKP C16 C9 C 0 1 Y N N 17.254 40.984 6.751 -3.413 0.267 0.267 C16 VKP 9 VKP N1 N1 N 0 1 Y N N 21.064 42.193 4.708 -0.382 -0.395 -0.738 N1 VKP 10 VKP N2 N2 N 0 1 Y N N 23.130 40.281 4.325 1.806 -1.682 0.237 N2 VKP 11 VKP C4 C10 C 0 1 Y N N 22.181 40.122 5.265 0.596 -2.172 0.466 C4 VKP 12 VKP N3 N3 N 0 1 N N N 22.271 38.964 6.030 0.446 -3.340 1.206 N3 VKP 13 VKP N4 N4 N 0 1 N N N 24.086 41.595 2.565 3.218 -0.049 -0.711 N4 VKP 14 VKP C5 C11 C 0 1 N N N 25.243 40.692 2.537 4.253 -0.895 -0.102 C5 VKP 15 VKP C6 C12 C 0 1 N N N 26.486 41.374 3.126 5.636 -0.382 -0.507 C6 VKP 16 VKP C7 C13 C 0 1 N N N 26.755 42.739 2.439 5.795 1.068 -0.041 C7 VKP 17 VKP C8 C14 C 0 1 N N N 25.496 43.653 2.412 4.677 1.918 -0.650 C8 VKP 18 VKP C9 C15 C 0 1 N N N 24.231 42.919 1.919 3.321 1.338 -0.241 C9 VKP 19 VKP C10 C16 C 0 1 N N N 27.262 42.552 1.008 7.153 1.606 -0.495 C10 VKP 20 VKP N5 N5 N 0 1 N N N 27.858 43.372 3.115 5.710 1.124 1.425 N5 VKP 21 VKP S1 S1 S 0 1 N N N 19.984 40.913 6.747 -2.141 -2.156 0.264 S1 VKP 22 VKP CL1 CL1 CL 0 0 N N N 17.361 41.377 8.437 -2.643 0.539 1.799 CL1 VKP 23 VKP CL2 CL2 CL 0 0 N N N 14.609 41.220 7.130 -4.505 2.725 0.577 CL2 VKP 24 VKP H1 H1 H 0 1 N N N 22.051 43.268 3.202 0.945 1.000 -1.535 H1 VKP 25 VKP H2 H2 H 0 1 N N N 19.149 40.172 4.029 -3.657 -2.062 -2.176 H2 VKP 26 VKP H3 H3 H 0 1 N N N 16.889 39.966 3.002 -5.132 -0.337 -3.126 H3 VKP 27 VKP H4 H4 H 0 1 N N N 14.863 40.568 4.336 -5.504 1.772 -1.913 H4 VKP 28 VKP H5 H5 H 0 1 N N N 23.062 38.428 5.733 1.227 -3.798 1.555 H5 VKP 29 VKP H6 H6 H 0 1 N N N 22.377 39.209 6.994 -0.440 -3.698 1.373 H6 VKP 30 VKP H7 H7 H 0 1 N N N 25.012 39.793 3.127 4.157 -0.861 0.984 H7 VKP 31 VKP H8 H8 H 0 1 N N N 25.450 40.404 1.496 4.131 -1.922 -0.445 H8 VKP 32 VKP H9 H9 H 0 1 N N N 27.358 40.720 2.979 6.404 -1.000 -0.043 H9 VKP 33 VKP H10 H10 H 0 1 N N N 26.329 41.539 4.202 5.738 -0.429 -1.592 H10 VKP 34 VKP H11 H11 H 0 1 N N N 25.693 44.502 1.741 4.759 2.942 -0.288 H11 VKP 35 VKP H12 H12 H 0 1 N N N 25.311 44.026 3.430 4.764 1.908 -1.737 H12 VKP 36 VKP H13 H13 H 0 1 N N N 23.348 43.531 2.155 2.523 1.932 -0.685 H13 VKP 37 VKP H14 H14 H 0 1 N N N 24.300 42.780 0.830 3.229 1.361 0.845 H14 VKP 38 VKP H15 H15 H 0 1 N N N 28.153 41.907 1.015 7.948 0.998 -0.062 H15 VKP 39 VKP H16 H16 H 0 1 N N N 26.475 42.083 0.399 7.215 1.564 -1.582 H16 VKP 40 VKP H17 H17 H 0 1 N N N 27.522 43.531 0.580 7.264 2.638 -0.164 H17 VKP 41 VKP H18 H18 H 0 1 N N N 27.614 43.535 4.071 5.812 2.071 1.757 H18 VKP 42 VKP H19 H19 H 0 1 N N N 28.660 42.777 3.073 4.847 0.716 1.753 H19 VKP 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKP C10 C7 SING N N 1 VKP C9 C8 SING N N 2 VKP C9 N4 SING N N 3 VKP C8 C7 SING N N 4 VKP C7 N5 SING N N 5 VKP C7 C6 SING N N 6 VKP C5 N4 SING N N 7 VKP C5 C6 SING N N 8 VKP N4 C3 SING N N 9 VKP C3 C2 DOUB Y N 10 VKP C3 N2 SING Y N 11 VKP C2 N1 SING Y N 12 VKP C13 C12 DOUB Y N 13 VKP C13 C14 SING Y N 14 VKP N2 C4 DOUB Y N 15 VKP C12 C11 SING Y N 16 VKP N1 C1 DOUB Y N 17 VKP C14 C15 DOUB Y N 18 VKP C4 C1 SING Y N 19 VKP C4 N3 SING N N 20 VKP C1 S1 SING N N 21 VKP C11 S1 SING N N 22 VKP C11 C16 DOUB Y N 23 VKP C15 C16 SING Y N 24 VKP C15 CL2 SING N N 25 VKP C16 CL1 SING N N 26 VKP C2 H1 SING N N 27 VKP C12 H2 SING N N 28 VKP C13 H3 SING N N 29 VKP C14 H4 SING N N 30 VKP N3 H5 SING N N 31 VKP N3 H6 SING N N 32 VKP C5 H7 SING N N 33 VKP C5 H8 SING N N 34 VKP C6 H9 SING N N 35 VKP C6 H10 SING N N 36 VKP C8 H11 SING N N 37 VKP C8 H12 SING N N 38 VKP C9 H13 SING N N 39 VKP C9 H14 SING N N 40 VKP C10 H15 SING N N 41 VKP C10 H16 SING N N 42 VKP C10 H17 SING N N 43 VKP N5 H18 SING N N 44 VKP N5 H19 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKP SMILES ACDLabs 12.01 "c2(Sc1c(c(ccc1)Cl)Cl)ncc(nc2N)N3CCC(N)(CC3)C" VKP InChI InChI 1.03 "InChI=1S/C16H19Cl2N5S/c1-16(20)5-7-23(8-6-16)12-9-21-15(14(19)22-12)24-11-4-2-3-10(17)13(11)18/h2-4,9H,5-8,20H2,1H3,(H2,19,22)" VKP InChIKey InChI 1.03 VPEZYDNNURIHBQ-UHFFFAOYSA-N VKP SMILES_CANONICAL CACTVS 3.385 "CC1(N)CCN(CC1)c2cnc(Sc3cccc(Cl)c3Cl)c(N)n2" VKP SMILES CACTVS 3.385 "CC1(N)CCN(CC1)c2cnc(Sc3cccc(Cl)c3Cl)c(N)n2" VKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)c2cnc(c(n2)N)Sc3cccc(c3Cl)Cl)N" VKP SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)c2cnc(c(n2)N)Sc3cccc(c3Cl)Cl)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VKP "SYSTEMATIC NAME" ACDLabs 12.01 "6-(4-amino-4-methylpiperidin-1-yl)-3-[(2,3-dichlorophenyl)sulfanyl]pyrazin-2-amine" VKP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]sulfanyl-pyrazin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKP "Create component" 2020-08-24 RCSB VKP "Initial release" 2020-09-23 RCSB ##